# List of top-scoring protein chains for t2k-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1eluB 390 9.14e-01 1elqA c.67.1.3 34435 1eluA 390 9.43e-01 1elqA c.67.1.3 34434 1elqA 390 9.64e-01 1elqA c.67.1.3 34436 1ecfB 504 1.22e+00 1ecfB c.61.1.1,d.153.1.1 34054,41821 1h75A 81 1.57e+00 1h75A c.47.1.1 60716 1ecfA 504 2.51e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 1o5hA 214 2.86e+00 a.191.1.1 92497 1que 303 3.33e+00 1fnc b.43.4.2,c.25.1.1 25647,31537 1w34A 304 4.17e+00 1qh0A 295 4.60e+00 b.43.4.2,c.25.1.1 68891,68892 1i0lA 221 4.99e+00 c.61.1.1 71096 1ve3A 227 5.31e+00 1f0iA 504 5.41e+00 1f0iA d.136.1.2,d.136.1.2 59566,59567 1zelA 298 5.83e+00 1gtdA 85 5.96e+00 d.284.1.1 76344 1um8A 376 6.31e+00 c.37.1.20 99580 1ogiA 303 6.41e+00 b.43.4.2,c.25.1.1 92914,92915 2apqA 139 6.59e+00 2bsaA 303 6.88e+00 1se0A 116 7.04e+00 g.52.1.1 98814 1mwvA 714 7.04e+00 a.93.1.3,a.93.1.3 85161,85162 2a35A 215 7.75e+00 1i7pA 274 7.92e+00 b.43.4.2,c.25.1.1 66048,66049 1h80A 464 8.32e+00 b.80.1.8 65714 1wgbA 159 8.46e+00 1yb2A 275 8.59e+00 1tc1A 220 9.00e+00 1tc1A c.61.1.1 34083 1j5sA 463 9.72e+00 c.1.9.8 71580 1k4mA 213 9.88e+00 c.26.1.3 77258 1ro7A 259 1.10e+01 c.130.1.1 97667 1c2pA 576 1.11e+01 1quvA e.8.1.4 43117 1fnc 314 1.15e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1kmqA 184 1.18e+01 c.37.1.8 84412 1m4uA 206 1.18e+01 g.17.1.7 78625 1b2rA 304 1.20e+01 1fnc b.43.4.2,c.25.1.1 25648,31538 1fnb 314 1.28e+01 1fnc b.43.4.2,c.25.1.1 25628,31518 1yt3A 375 1.28e+01 1as0 353 1.29e+01 1cipA a.66.1.1,c.37.1.8 18212,32095 1v0wA 506 1.38e+01 d.136.1.2,d.136.1.2 108220,108221 1yyaA 250 1.38e+01 1tqyB 415 1.40e+01 c.95.1.1,c.95.1.1 107247,107248 1v2yA 105 1.41e+01 d.15.1.1 100275 1cipA 353 1.44e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1s7iA 124 1.46e+01 d.58.4.9 105353 1mh1 186 1.47e+01 1eesA c.37.1.8 32002 1fnd 314 1.48e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1x11A 172 1.49e+01 1x11A b.55.1.2 26985 1svsA 353 1.50e+01 c.37.1.8 106051 1aqcA 172 1.52e+01 1x11A b.55.1.2 26983 1umkA 275 1.55e+01 1jb9A 316 1.57e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1tx4B 178 1.62e+01 1ctqA c.37.1.8 32045 1eq6A 189 1.66e+01 1eq6A d.107.1.1 40796 1jhsA 188 1.66e+01 d.107.1.1 84172 1zd9A 188 1.70e+01 1bx1A 314 1.80e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1hfc 169 1.85e+01 1hfc d.92.1.11 40335 2g2cA 167 1.93e+01 1v8gA 329 1.98e+01 a.46.2.1,c.27.1.1 100505,100506 1vk8A 106 2.03e+01 d.58.48.1 108636 1rnd 124 2.12e+01 7rsa d.5.1.1 37178 1t0hB 224 2.25e+01 c.37.1.1 106208 1vg8A 207 2.28e+01 c.37.1.8 108606 2bo4A 397 2.34e+01 1a8p 258 2.38e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1ujqA 305 2.38e+01 c.1.12.7 99463 2c2hA 192 2.38e+01 2a9kA 187 2.40e+01 1xtqA 177 2.44e+01 2b5oA 402 2.47e+01 1sefA 274 2.47e+01 b.82.1.11 105452 1yoaA 159 2.48e+01 1wn2A 121 2.53e+01 1tadA 324 2.66e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1jztA 246 2.67e+01 c.104.1.1 63319 1jb0D 138 2.72e+01 1jb0D d.187.1.1 62823 1go2A 304 2.74e+01 b.43.4.2,c.25.1.1 76243,76244 2evwX 166 2.76e+01 1dy5A 124 2.81e+01 7rsa d.5.1.1 37163 1ck7A 631 2.94e+01 1ck7A b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 2f1fA 164 2.98e+01 2bv5A 282 3.15e+01 2fh7A 595 3.17e+01 1t3lA 337 3.17e+01 b.34.2.1,c.37.1.1 106358,106359 1omhA 293 3.28e+01 d.89.1.5 93348 2axtT 32 3.30e+01 2fbhA 146 3.32e+01 1v1aA 309 3.33e+01 c.72.1.1 100249 1s5lT 32 3.35e+01 1ykiA 217 3.39e+01 1tag 324 3.46e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 2admA 421 3.49e+01 2admA c.66.1.27 34238 1z6mA 175 3.58e+01 1vdeA 454 3.65e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1qx4A 274 3.71e+01 b.43.4.2,c.25.1.1 104624,104625 2f2lX 167 3.72e+01 3fib 249 3.73e+01 3fib d.171.1.1 42455 1aqjA 421 3.73e+01 2admA c.66.1.27 34242 7rsa 124 3.87e+01 7rsa d.5.1.1 37165 1icrA 217 3.88e+01 1vfrA d.90.1.1 62274 1mbxC 106 3.96e+01 d.45.1.2 78929 1c30B 382 3.99e+01 c.8.3.1,c.23.16.1 30736,31413 1wv9A 94 3.99e+01 1c3oB 382 4.03e+01 1c3oB c.8.3.1,c.23.16.1 30744,31421 1w25A 459 4.03e+01 1cs0B 382 4.17e+01 1c3oB c.8.3.1,c.23.16.1 30740,31417 1iqpA 327 4.25e+01 a.80.1.1,c.37.1.20 62649,62650 1a9xB 379 4.28e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1ifl 53 4.29e+01 1ifi h.1.4.1 45566 1e5pA 151 4.36e+01 1bj7 b.60.1.1 59272 1dfaA 454 4.38e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1iruK 201 4.39e+01 d.153.1.4 71362 1v54A 514 4.41e+01 f.24.1.1 100321 1j5wA 298 4.41e+01 d.104.1.1 71589 1kr7A 110 4.42e+01 a.1.1.4 72890 1v5vA 401 4.61e+01 2fibA 269 4.66e+01 3fib d.171.1.1 42457 1fib 269 4.67e+01 3fib d.171.1.1 42456 1edoA 244 4.68e+01 1ybvA c.2.1.2 29896 1k4nA 192 4.74e+01 d.32.1.5 72059 1zwwA 256 4.76e+01 1dzaA 129 4.86e+01 7rsa d.5.1.1 37275 1azsC 388 4.86e+01 1cipA a.66.1.1,c.37.1.8 18203,32086 2occA 514 4.92e+01 2occA f.24.1.1 43518 1z98A 281 5.03e+01 1mzhA 225 5.03e+01 c.1.10.1 79698 1gumA 222 5.04e+01 1pgtA a.45.1.1,c.47.1.5 17683,32977 1kijA 390 5.05e+01 d.14.1.3,d.122.1.2 72514,72515 1gulA 222 5.06e+01 1pgtA a.45.1.1,c.47.1.5 17675,32969 1guaA 167 5.07e+01 1ctqA c.37.1.8 32013 1r31A 428 5.14e+01 d.58.20.1,d.179.1.1 96897,96898 2fclA 169 5.15e+01 1vplA 256 5.26e+01 1jeoA 180 5.27e+01 c.80.1.3 66611 1u8zA 168 5.40e+01 1ekqA 272 5.42e+01 1c3qA c.72.1.2 34941 821p 166 5.45e+01 1ctqA c.37.1.8 31969 1mnzA 388 5.55e+01 c.1.15.3 79328 1y51A 88 5.60e+01 1h6hA 143 5.61e+01 d.189.1.1 65681 1oaoC 729 5.61e+01 e.26.1.3 86746 1muwA 386 5.63e+01 c.1.15.3 79495 1a8l 226 5.65e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 2bjvA 265 5.74e+01 1a44 185 5.86e+01 1a44 b.17.1.1 23704 1a5q 124 5.87e+01 7rsa d.5.1.1 37258 1dcjA 81 5.87e+01 1dcjA d.68.3.3 59115 1fdpA 235 5.93e+01 5ptp b.47.1.2 26322 1v7cA 351 5.94e+01 c.79.1.1 100446 1j08A 226 6.10e+01 c.47.1.2,c.47.1.2 83855,83856 2brfA 110 6.11e+01 1cvrA 435 6.12e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 4xis 387 6.16e+01 4xis c.1.15.3 29421 2fn4A 181 6.18e+01 1w6tA 444 6.27e+01 1cby 259 6.35e+01 1cby d.103.1.1 40705 1gw9A 388 6.36e+01 c.1.15.3 70658 2gjsA 176 6.43e+01 1sfnA 246 6.49e+01 b.82.1.11 105496 1kshA 186 6.50e+01 c.37.1.8 72914 1w23A 360 6.52e+01 1vddA 228 6.60e+01 e.49.1.1 108519 1rsgA 516 6.62e+01 1yy5B 513 6.63e+01 2axyA 73 6.63e+01 1mc2A 122 6.70e+01 a.133.1.2 74622 1b4cA 92 6.80e+01 1b4cA a.39.1.2 17169 5p21 166 6.80e+01 1ctqA c.37.1.8 31966 1ytlA 174 6.83e+01 1gqiA 708 6.85e+01 c.1.8.10,d.92.2.2 76279,76280 1vjpA 394 6.91e+01 c.2.1.3,d.81.1.3 100828,100829 1xis 387 6.93e+01 4xis c.1.15.3 29422 1a4rA 191 6.95e+01 1ctqA c.37.1.8 32063 2kinB 100 7.04e+01 3kinB 3xis 387 7.16e+01 4xis c.1.15.3 29423 1g7cB 94 7.23e+01 1b64 d.58.12.1 39308 1pz4A 116 7.27e+01 d.106.1.1 95400 1a85A 158 7.28e+01 1hfc d.92.1.11 40355 2bl0C 142 7.28e+01 1ka2A 499 7.33e+01 d.92.1.5 77305 1q7sA 117 7.40e+01 c.131.1.1 96055 1ponA 36 7.47e+01 1ponA a.39.1.5 17239 1nf3A 195 7.49e+01 c.37.1.8 85594 2xis 387 7.54e+01 4xis c.1.15.3 29427 1guzA 310 7.54e+01 c.2.1.5,d.162.1.1 65586,65587 1q8iA 783 7.56e+01 c.55.3.5,e.8.1.1 96208,96209 1xccA 220 7.60e+01 1necA 216 7.65e+01 1vfrA d.90.1.1 40249 1ewkA 490 7.73e+01 1ewkA c.93.1.1 35712 1ip9A 85 7.86e+01 1ip9A d.15.2.2 62638 3mhtA 327 7.86e+01 6mhtA c.66.1.26 34234 2cxcA 144 7.89e+01 1hbzA 498 8.03e+01 1cf9A e.5.1.1 60937 1ub0A 258 8.10e+01 c.72.1.2 88394 1aokA 122 8.16e+01 1poa a.133.1.2 19560 1ze3D 125 8.18e+01 1oeyA 83 8.21e+01 d.15.2.2 92800 1f08A 148 8.32e+01 1f08A d.89.1.2 59564 1t4aA 84 8.43e+01 d.284.1.1 106404 1ycdA 243 8.48e+01 2bijA 305 8.49e+01 1jvwA 167 8.54e+01 d.26.1.1 71907 1xfkA 336 8.56e+01 1gio 125 8.57e+01 7rsa d.5.1.1 37304 1bd8 156 8.57e+01 1bd8 d.211.1.1 19157 1jltA 122 8.58e+01 a.133.1.2 66867 1ctaA 36 8.67e+01 1ctdA a.39.1.5 17232 1klqA 197 8.70e+01 d.135.1.1 68689 1an0A 190 8.72e+01 1ctqA c.37.1.8 32066 1y8tA 324 8.83e+01 1o26A 232 8.89e+01 d.207.1.1 86566 1f60B 94 8.91e+01 1b64 d.58.12.1 39307 1xx4A 261 8.94e+01 1tc5A 194 8.95e+01 c.110.1.1 106752