# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bijA 305 1.00e-01 1um8A 376 1.10e-01 c.37.1.20 99580 2bv5A 282 2.38e-01 1dqrA 557 8.41e-01 1dqrA c.80.1.2 35305 1hm5A 558 1.17e+00 c.80.1.2 76717 1o5hA 214 3.44e+00 a.191.1.1 92497 2gtrA 261 3.68e+00 2cxnA 557 4.37e+00 1yfbA 59 4.97e+00 1u0fA 564 5.48e+00 1iatA 557 5.74e+00 1dqrA c.80.1.2 62123 1cc1S 283 6.12e+00 2frvA e.19.1.1 43313 1c3pA 375 6.49e+00 1c3pA c.42.1.2 32606 1yb5A 351 6.65e+00 2a3nA 355 7.64e+00 1qlpA 394 7.92e+00 1ovaA e.1.1.1 42628 1kl7A 514 8.27e+00 c.79.1.1 72678 1zd9A 188 9.54e+00 1e5pA 151 9.78e+00 1bj7 b.60.1.1 59272 1rhcA 330 1.01e+01 c.1.16.3 97468 1yyaA 250 1.04e+01 1jlnA 297 1.17e+01 1pty c.45.1.2 63172 2gk3A 256 1.20e+01 2occA 514 1.23e+01 2occA f.24.1.1 43518 1ek4A 418 1.28e+01 1dd8A c.95.1.1,c.95.1.1 59436,59437 1sfnA 246 1.31e+01 b.82.1.11 105496 1dd8A 406 1.33e+01 1dd8A c.95.1.1,c.95.1.1 35932,35933 1ynfA 458 1.42e+01 1v54A 514 1.48e+01 f.24.1.1 100321 2b5oA 402 1.58e+01 1pjzA 203 1.68e+01 c.66.1.36 94794 1jztA 246 1.77e+01 c.104.1.1 63319 1t8tA 271 1.80e+01 c.37.1.5 106685 2bjvA 265 1.80e+01 1q8iA 783 1.82e+01 c.55.3.5,e.8.1.1 96208,96209 1hyeA 313 1.84e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1a12A 413 1.85e+01 1a12A b.69.5.1 27663 1guzA 310 1.96e+01 c.2.1.5,d.162.1.1 65586,65587 1z0rA 53 2.03e+01 2frvA 264 2.11e+01 2frvA e.19.1.1 43303 1frvA 264 2.14e+01 2frvA e.19.1.1 43308 2bywA 418 2.23e+01 1a79A 171 2.27e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 2b9hA 353 2.34e+01 1gvnA 90 2.46e+01 a.8.2.1 76353 1jb9A 316 2.52e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1bdg 451 2.53e+01 1qhaA c.55.1.3,c.55.1.3 33461,33462 1wkvA 389 2.93e+01 1u8zA 168 2.95e+01 1m1fA 110 2.97e+01 b.34.6.2 78401 1a8p 258 3.12e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1b9bA 255 3.14e+01 1amk c.1.1.1 28531 1i6wA 181 3.14e+01 1i6wA c.69.1.18 61859 2fh7A 595 3.19e+01 2fi9A 128 3.22e+01 1vrbA 342 3.23e+01 1ofhA 310 3.25e+01 c.37.1.20 86948 1ac5 483 3.27e+01 1ac5 c.69.1.5 34653 1ispA 181 3.47e+01 c.69.1.18 76778 2cy2A 174 3.60e+01 1ci6B 63 3.75e+01 1ci6B h.1.3.1 45549 1w36D 608 3.80e+01 1kutA 230 3.91e+01 d.143.1.1 73017 1bev4 68 3.92e+01 1bev4 2a9kA 187 4.04e+01 1is2A 661 4.11e+01 a.29.3.2,a.29.3.2,e.6.1.2 71382,71383,71384 1jo6A 45 4.17e+01 j.89.1.1 66989 1a1vA 476 4.20e+01 1heiA c.37.1.14,c.37.1.14 32467,32468 1o6yA 299 4.30e+01 d.144.1.7 81106 1kmqA 184 4.34e+01 c.37.1.8 84412 2citA 282 4.39e+01 1r5rA 119 4.42e+01 a.39.2.1 97104 1hzdA 272 4.46e+01 c.14.1.3 65969 1fztA 211 4.48e+01 1qhfA c.60.1.1 60158 1dioG 173 4.50e+01 1dioG a.23.2.1 16496 1tx4B 178 4.54e+01 1ctqA c.37.1.8 32045 1xrjA 261 4.55e+01 3timA 250 4.55e+01 1amk c.1.1.1 28483 1ky3A 182 4.59e+01 c.37.1.8 73193 1n7zA 334 4.65e+01 b.127.1.1 85380 1eexG 173 4.67e+01 1dioG a.23.2.1 16490 1gydB 315 4.69e+01 b.67.2.1 70751 1s8fA 177 4.69e+01 c.37.1.8 105370 1pvvA 315 4.95e+01 c.78.1.1,c.78.1.1 95190,95191 1xqwA 293 5.04e+01 1mtzA 293 5.06e+01 c.69.1.7 79467 1x3aA 100 5.08e+01 2bc2B 227 5.21e+01 1a7tA d.157.1.1 42032 2bv9A 290 5.29e+01 1e3dA 266 5.29e+01 2frvA e.19.1.1 59188 1h1wA 289 5.33e+01 d.144.1.7 83460 1rkqA 282 5.42e+01 c.108.1.10 97621 1vqb 87 5.44e+01 1gvp b.40.4.7 25370 1ci6A 63 5.49e+01 1ci6A h.1.3.1 45548 1zkdA 387 5.52e+01 1gweA 503 5.55e+01 e.5.1.1 70667 1wn2A 121 5.62e+01 1ako 268 5.72e+01 1ako d.151.1.1 41779 1rtu 114 5.72e+01 9rnt d.1.1.4 36139 1mdbA 539 5.74e+01 e.23.1.1 79008 3seb 238 5.78e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1q32A 544 5.79e+01 d.136.1.3,d.136.1.3 104507,104508 1yksA 440 5.81e+01 1hbzA 498 5.89e+01 1cf9A e.5.1.1 60937 1c25 161 5.90e+01 1c25 c.46.1.1 32698 1ae3 86 5.96e+01 1gvp b.40.4.7 25381 1ogsA 497 5.96e+01 b.71.1.2,c.1.8.3 86997,86998 1ibvB 229 6.04e+01 1mqoA 227 6.05e+01 d.157.1.1 103846 1txgA 335 6.05e+01 1ogiA 303 6.06e+01 b.43.4.2,c.25.1.1 92914,92915 3sil 379 6.08e+01 3sil b.68.1.1 27542 1kaeA 434 6.10e+01 c.82.1.2 72247 1que 303 6.13e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1w0dA 337 6.15e+01 2bhuA 602 6.21e+01 1ko3A 230 6.32e+01 d.157.1.1 90974 1nstA 325 6.33e+01 1nstA c.37.1.5 31951 1vcdA 126 6.33e+01 1k75A 434 6.38e+01 c.82.1.2 68253 1i85A 110 6.48e+01 1i85A b.1.1.1 61946 1treA 255 6.52e+01 1amk c.1.1.1 28505 1v10A 521 6.58e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1c7iA 489 6.58e+01 1thg c.69.1.1 34632 1ad6 185 6.61e+01 1guxA a.74.1.3 18390 1uj2A 252 6.63e+01 c.37.1.6 99452 1gvp 87 6.66e+01 1gvp b.40.4.7 25369 1vi2A 300 6.67e+01 c.2.1.7,c.58.1.5 100726,100727 1bmc 221 6.72e+01 1a7tA d.157.1.1 42038 1c7jA 489 6.83e+01 2bce c.69.1.1 34631 1tq8A 163 6.83e+01 c.26.2.4 107204 1uslA 170 6.86e+01 c.121.1.1 99871 1z6jT 211 6.93e+01 1fvuB 125 7.00e+01 1ixxB d.169.1.1 42346 1b7aA 186 7.05e+01 1a44 b.17.1.1 23705 1z06A 189 7.13e+01 1kp0A 402 7.20e+01 c.55.2.1,d.127.1.1 72834,72835 2b30A 301 7.23e+01 1pyaB 228 7.33e+01 1pyaB 1aj4 161 7.41e+01 1ncx a.39.1.5 17244 1gyhA 318 7.42e+01 b.67.2.1 70757 2gvaA 87 7.42e+01 1gvp b.40.4.7 25389 1b2rA 304 7.52e+01 1fnc b.43.4.2,c.25.1.1 25648,31538 1w34A 304 7.54e+01 1wgbA 159 7.65e+01 1ycdA 243 7.66e+01 1ne2A 200 7.74e+01 c.66.1.32 85586 1heiA 451 7.95e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1qh0A 295 7.96e+01 b.43.4.2,c.25.1.1 68891,68892 1nbwA 607 7.98e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1j0dA 341 8.01e+01 c.79.1.1 83902 1go2A 304 8.05e+01 b.43.4.2,c.25.1.1 76243,76244 1ae2 87 8.06e+01 1gvp b.40.4.7 25382 1jvbA 347 8.07e+01 b.35.1.2,c.2.1.1 77181,77182 2b25A 336 8.11e+01 1t6sA 162 8.15e+01 1gskA 513 8.16e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 2fn4A 181 8.17e+01 2bsaA 303 8.35e+01 1e8cA 498 8.39e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1boy 219 8.41e+01 1boy b.1.2.1,b.1.2.1 21955,21956 2f71A 298 8.42e+01 1fqvD 149 8.42e+01 1fqvD a.157.1.1,d.42.1.1 19263,38667 1npdA 288 8.49e+01 c.2.1.7,c.58.1.5 80681,80682 1a1s 314 8.63e+01 1othA c.78.1.1,c.78.1.1 35258,35259 1cpzA 68 8.68e+01 1aw0 d.58.17.1 39351 1iupA 282 8.85e+01 c.69.1.10 76815 1mh1 186 8.92e+01 1eesA c.37.1.8 32002 2astA 159 8.98e+01 1uk8A 282 8.98e+01 c.69.1.10 107907