a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0318
- gi|17556903|ref|NP_498854.1|_1:177 Leucine AminoPeptidase family member (lap-1) [Caenorhabditis elegans]
- gi|466102|sp|P34629|AMPL_CAEEL Leucine aminopeptidase 1 [Taxonomy]
- gi|289760|gb|AAA28198.1| Leucine aminopeptidase protein 1 [Caenorhabditis elegans]
- gi|39591687|emb|CAE71265.1|_1:179 Hypothetical protein CBG18147 [Caenorhabditis briggsae]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MTQVLVRNGIQAVGDGLTSLIIVGKKSVLKNVTFEGKFKEVAQKFVTDGDSWNSMISRIPASGRH
   2 MTQVLVRNGIQAVGDGLTSLIIVGKKSVLKNVTFEGKFKEVAQKFVTDGDSWNSMISRIPASGRH
   3 MAQILVRNGIQAVGEGLTSVVIVGKKSVLQAVSFEGRFQEVAQKFVGDSSSWTSMVSRINSSGRL


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 PLHYELAHLITVPDASSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFAEYPDVLSHVAAIART
   2 PLHYELAHLITVPDASSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFAEYPDVLSHVAAIART
   3 PLHYELAHLIAVPDTASRGNTPTNSHALFRDMRSVSYPSDVQNVHVVLFAEYSDVLAHVAAIART


             140         150       160       170          
              |           |         |         |          
   1 FCKFSMKTSG..IRELNVNIDVVCDKLTNEDAVFLTDLSESVRETARLI...
   2 FCKFSMKTSG..IRELNVNIDVVCDKLTNEDAVFLTDLSESVRETARLIdtp
   3 FCKFSMKTSAteARSLNVNIDVVCDQFTSQDAHFLTDLSESVRETARLIdtp