# List of top-scoring protein chains for T0318.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sfnA 246 8.29e-01 b.82.1.11 105496 2b5lA 1140 1.86e+00 1an9A 340 3.11e+00 1an9A c.4.1.2,d.16.1.3 30617,37904 1ve9A 347 3.11e+00 c.4.1.2,d.16.1.3 100571,100572 1fa0A 537 4.18e+00 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1uohA 226 4.74e+00 d.211.1.1 99690 1qymA 227 4.75e+00 d.211.1.1 96596 2fv8A 207 5.47e+00 1js8A 394 5.71e+00 a.86.1.1,b.112.1.1 67219,67220 1z2cA 193 5.88e+00 1cc0A 190 8.62e+00 1eesA c.37.1.8 32050 1ow3B 193 8.89e+00 c.37.1.8 87486 1zd1A 284 9.19e+00 1tx4B 177 9.60e+00 1ctqA c.37.1.8 32045 1xcgB 178 9.62e+00 1d8hA 311 9.66e+00 1d8iA d.63.1.1 39544 1ozjA 144 9.81e+00 d.164.1.1 93846 1mhdA 132 9.91e+00 1mhdA d.164.1.1 42175 1ywmA 200 1.02e+01 1bwp 233 1.34e+01 1wab c.23.10.3 31342 1kmqA 184 1.37e+01 c.37.1.8 84412 1lb1B 192 1.63e+01 c.37.1.8 73786 1s1cA 183 1.66e+01 c.37.1.8 98340 1x86B 196 1.81e+01 c.37.1.8 109506 1r6bX 758 1.86e+01 a.174.1.1,c.37.1.20,c.37.1.20 104818,104819,104820 1womA 271 1.93e+01 1j9aA 184 2.02e+01 c.55.3.5 84135 1b1cA 181 2.39e+01 1amoA c.23.5.2 31212 2ayuA 417 2.57e+01 1rhxA 87 2.76e+01 1bwq 233 2.82e+01 1wab c.23.10.3 31343 1fpwA 190 2.92e+01 1rec a.39.1.5 17329 1wab 232 2.93e+01 1wab c.23.10.3 31341 1lmiA 131 2.98e+01 b.1.19.1 78098 1bwr 233 2.99e+01 1wab c.23.10.3 31344 1cxzA 182 3.03e+01 1ctqA c.37.1.8 32048 1e33P 489 3.14e+01 1auk c.76.1.2 59186 1es9A 232 3.20e+01 1wab c.23.10.3 31340 1i2hA 168 3.22e+01 b.55.1.4 71103 1x9aA 107 3.33e+01 1ffvC 287 3.39e+01 1qj2C d.87.2.1,d.145.1.3 40223,41754 1ffuC 287 3.40e+01 1qj2C d.87.2.1,d.145.1.3 40225,41756 1mkfA 382 3.47e+01 b.116.1.1 79232 2av9A 147 3.47e+01 1ez0A 510 3.47e+01 1eyyA c.82.1.1 35385 2b3zA 373 3.55e+01 1ddvA 111 3.74e+01 1evhA b.55.1.4 27002 1ds6A 192 3.78e+01 1ctqA c.37.1.8 32006 1ciy 590 3.80e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1e2sP 489 3.83e+01 1auk c.76.1.2 35031 1e1zP 489 3.85e+01 1auk c.76.1.2 59158 1e3cP 489 3.85e+01 1auk c.76.1.2 59187 1auk 489 3.85e+01 1auk c.76.1.2 35030 1bbo 57 3.91e+01 1bbo g.37.1.1,g.37.1.1 45046,45047 1myo 118 3.97e+01 2myo d.211.1.1 19174 1hfp 186 3.98e+01 1aoeA c.71.1.1 34904 1ddwA 120 4.03e+01 1evhA b.55.1.4 27001 1hfq 186 4.09e+01 1aoeA c.71.1.1 34903 1kmvA 186 4.20e+01 c.71.1.1 72757 1dlr 186 4.20e+01 1aoeA c.71.1.1 34909 1mvtA 187 4.23e+01 c.71.1.1 85157 1dls 186 4.24e+01 1aoeA c.71.1.1 34906 2b3yA 888 4.26e+01 1u71A 186 4.41e+01 2g24A 333 4.42e+01 1hrnA 337 4.44e+01 1smrA b.50.1.2 26869 2bksA 340 4.45e+01 1yswA 164 4.68e+01 1bn8A 420 4.68e+01 1pcl b.80.1.1 28022 2bspA 420 4.75e+01 1pcl b.80.1.1 28023 1g5mA 166 5.18e+01 1maz f.1.4.1 60286 1gjhA 166 5.49e+01 1maz f.1.4.1 60575 1jx2B 315 5.69e+01 c.37.1.8 67404 1sokA 127 5.74e+01 b.3.4.1 105846 2au5A 139 5.78e+01 1c25 161 5.81e+01 1c25 c.46.1.1 32698 1nox 205 5.91e+01 1nox d.90.1.1 40242 1hw7A 255 5.98e+01 1i7fA d.193.1.1 61297 1h0cA 392 6.09e+01 c.67.1.3 83424 2fmlA 273 6.14e+01 1ydeA 270 6.33e+01 2g0nA 179 6.40e+01 1h7eA 245 6.50e+01 c.68.1.13 60717 1tjnA 156 6.53e+01 c.92.1.3 107048 1he1C 176 6.83e+01 1ctqA c.37.1.8 32003 1foeB 177 6.84e+01 c.37.1.8 32008 1i94H 138 7.27e+01 1seiA d.140.1.1 61999 1i7fA 292 7.29e+01 1i7fA d.193.1.1 61888 1g4uR 184 7.34e+01 1ctqA c.37.1.8 32005 1mh1 186 7.39e+01 1eesA c.37.1.8 32002 1i4dD 192 7.47e+01 1ctqA c.37.1.8 61684 1zj6A 187 7.63e+01 1z6yA 179 7.63e+01 1hh4A 192 7.65e+01 c.37.1.8 61037 2h16A 183 7.70e+01 2biiA 424 7.78e+01 1wkpA 171 7.89e+01 2h17A 181 7.89e+01 1cvrA 435 8.05e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1hkhA 279 8.20e+01 c.69.1.12 90628 1ye8A 178 8.20e+01 1o4zA 346 8.34e+01 b.29.1.2 92474 1aqcA 172 8.38e+01 1x11A b.55.1.2 26983 1f6wA 533 8.42e+01 2bce c.69.1.1 34629 1pe4A 67 8.75e+01 g.3.7.1 104122 1xm7A 195 8.78e+01 1j0aA 325 8.94e+01 c.79.1.1 83871