# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1k8kA 418 2.45e-02 c.55.1.1,c.55.1.1 68305,68306 2cy2A 174 3.80e-01 1s2wA 295 5.56e-01 c.1.12.7 98407 1kmqA 184 5.74e-01 c.37.1.8 84412 1ss4A 153 6.51e-01 d.32.1.6 105976 2b3yA 888 1.04e+00 2f1rA 171 1.64e+00 1j55A 95 1.65e+00 a.39.1.2 77078 8dfr 189 2.30e+00 1aoeA c.71.1.1 34895 1lxjA 104 2.59e+00 d.58.48.1 84736 1y7rA 133 2.79e+00 1y7qA 98 2.86e+00 1mp9A 198 2.88e+00 d.129.1.1,d.129.1.1 91385,91386 1tc1A 220 2.93e+00 1tc1A c.61.1.1 34083 1hleA 345 3.20e+00 1ovaA e.1.1.1 42618 1tqyB 415 3.25e+00 c.95.1.1,c.95.1.1 107247,107248 1z9bA 135 3.27e+00 1i0lA 221 3.60e+00 c.61.1.1 71096 1qvcA 145 4.03e+00 3ullA b.40.4.3 25284 1cdzA 96 4.18e+00 1cdzA c.15.1.1 30925 1b7yB 785 4.33e+00 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1nox 205 4.35e+00 1nox d.90.1.1 40242 2a72A 146 4.51e+00 1gx1A 160 4.86e+00 d.79.5.1 70675 1e2kA 331 5.27e+00 1qhiA c.37.1.1 31854 1se0A 116 5.46e+00 g.52.1.1 98814 2go8A 122 6.49e+00 2f06A 144 6.62e+00 1kmvA 186 6.97e+00 c.71.1.1 72757 2ftrA 108 7.14e+00 1jy1A 464 7.32e+00 d.136.1.3,d.136.1.3 67438,67439 1l1qA 186 7.93e+00 c.61.1.1 77653 2c27A 315 8.03e+00 1twfK 120 8.26e+00 2f9dA 125 8.52e+00 1v58A 241 9.22e+00 c.47.1.9,d.17.3.1 108371,108372 1ukkA 142 9.76e+00 d.227.1.1 99491 1mtpA 323 1.00e+01 e.1.1.1 85107 2cy7A 396 1.00e+01 1v0aA 178 1.01e+01 1b3tA 147 1.07e+01 1b3tA d.58.8.1 39228 1zb9A 143 1.11e+01 2fe7A 166 1.16e+01 2gw6A 123 1.19e+01 1vk8A 106 1.30e+01 d.58.48.1 108636 1w5fA 353 1.33e+01 1hqz1 141 1.34e+01 1shwB 181 1.41e+01 b.18.1.4 105563 1nd6A 354 1.43e+01 c.60.1.2 80407 1kgsA 225 1.43e+01 a.4.6.1,c.23.1.1 68596,68597 2d00A 109 1.46e+01 1q2hA 69 1.48e+01 a.34.4.1 104498 2bfwA 200 1.53e+01 1ywmA 200 1.54e+01 1np6A 174 1.56e+01 c.37.1.10 85954 1uehA 253 1.58e+01 c.101.1.1 99259 1fdr 248 1.65e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 2fhwA 24 1.75e+01 1eejA 216 1.77e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1dyr 206 1.77e+01 1aoeA c.71.1.1 34916 1cqxA 403 1.82e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1v5mA 136 1.88e+01 b.55.1.1 108379 1xppA 115 1.96e+01 1em8A 147 1.97e+01 c.128.1.1 90457 1ggzA 148 1.99e+01 a.39.1.5 70176 1i3cA 149 2.02e+01 c.23.1.1 71112 1zetA 388 2.06e+01 2b8nA 429 2.08e+01 1n57A 291 2.09e+01 c.23.16.2 85328 1uh5A 329 2.12e+01 c.2.1.2 107840 2d28C 149 2.15e+01 1vhnA 318 2.26e+01 c.1.4.1 100693 1aisA 182 2.26e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1no5A 114 2.32e+01 d.218.1.5 92014 1kb9H 93 2.37e+01 f.23.13.1 77323 1q7lA 198 2.44e+01 c.56.5.4 96044 1lfdA 87 2.47e+01 1lfdA d.15.1.5 37622 1xeaA 323 2.54e+01 c.2.1.3,d.81.1.5 109572,109573 1mbyA 88 2.60e+01 d.223.1.1 78931 1im8A 244 2.62e+01 c.66.1.14 66212 1qwoA 442 2.62e+01 c.60.1.2 104620 1zmpA 32 2.64e+01 1vyxA 60 2.73e+01 1urjA 1136 2.77e+01 1zkcA 197 2.79e+01 1josA 128 2.83e+01 d.52.7.1 84191 1nf9A 207 2.84e+01 c.33.1.3 85631 2ghrA 302 2.87e+01 1iibA 106 2.89e+01 1iibA c.44.2.1 32648 1rdqE 350 2.90e+01 d.144.1.7 97314 2pii 112 3.02e+01 2pii d.58.5.1 39071 1utcA 363 3.02e+01 a.118.1.4,b.69.6.1 99914,99915 1eluA 390 3.09e+01 1elqA c.67.1.3 34434 1oeyA 83 3.16e+01 d.15.2.2 92800 1twfC 318 3.17e+01 1qfjA 232 3.17e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 2bngA 149 3.20e+01 1xcbA 211 3.21e+01 a.4.5.38,c.2.1.12 109552,109553 1yzhA 214 3.26e+01 1kb9D 246 3.33e+01 a.3.1.3,f.23.11.1 77317,77318 1zo0A 126 3.34e+01 2fsxA 148 3.35e+01 1whsA 255 3.40e+01 1ivyA c.69.1.5 34649 1ys4A 354 3.45e+01 1u24A 337 3.46e+01 1p0hA 318 3.50e+01 d.108.1.1 93866 1ckeA 227 3.56e+01 1ckeA c.37.1.1 31846 1q0qA 406 3.65e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1x7oA 287 3.65e+01 1mh1 186 3.66e+01 1eesA c.37.1.8 32002 1wmhA 89 3.73e+01 1u8sA 192 3.73e+01 d.58.18.5,d.58.18.5 107737,107738 1h70A 255 3.74e+01 1h70A d.126.1.3 60711 1e5pA 151 3.79e+01 1bj7 b.60.1.1 59272 1rv9A 259 3.79e+01 d.194.1.2 105105 1w5tA 412 3.81e+01 1w6uA 302 3.82e+01 1sheA 103 4.00e+01 d.274.1.1 105551 1ig0A 319 4.09e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1n0xH 230 4.09e+01 b.1.1.1,b.1.1.2 91528,91529 1d02A 202 4.16e+01 1d02A c.52.1.8 33313 2b4hA 254 4.19e+01 1qouA 181 4.20e+01 1qouA b.17.1.1 23707 1kjwA 295 4.21e+01 b.34.2.1,c.37.1.1 68643,68644 1msc 129 4.22e+01 1msc d.85.1.1 40039 1vl5A 260 4.25e+01 c.66.1.41 108720 1fna 93 4.25e+01 1fnf b.1.2.1 21971 2gmfA 127 4.30e+01 2gmfA a.26.1.2 16849 451c 82 4.31e+01 451c a.3.1.1 15904 2atzA 180 4.36e+01 1xg5A 279 4.38e+01 1mwqA 101 4.40e+01 d.58.4.7 91481 1dzlA 505 4.41e+01 1dzlA b.121.6.1 23586 1a9xB 379 4.47e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 2cveA 191 4.49e+01 1i4mA 108 4.56e+01 d.6.1.1 66025 1kt6A 183 4.56e+01 b.60.1.1 84466 1jl1A 155 4.60e+01 c.55.3.1 66821 1c30B 382 4.63e+01 c.8.3.1,c.23.16.1 30736,31413 2av5A 120 4.65e+01 1z2nX 324 4.69e+01 1xg0A 76 4.75e+01 1t3uA 104 4.77e+01 d.244.1.1 99120 1pm4A 119 4.86e+01 b.135.1.1 94891 1pxvA 183 4.89e+01 d.3.1.1 95301 1e5mA 416 4.92e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1qysA 106 4.93e+01 k.41.1.1 96603 1alu 186 4.95e+01 1alu a.26.1.1 16826 1izmA 184 4.95e+01 a.199.1.1 90725 1k8rB 110 4.95e+01 d.15.1.5 72180 1ppjB 439 5.00e+01 d.185.1.1,d.185.1.1 104254,104255 1qf9A 194 5.07e+01 1zin c.37.1.1 31848 2a50B 168 5.14e+01 1aqzA 149 5.20e+01 1aqzA d.1.1.3 36238 1vlaA 150 5.27e+01 d.227.1.2 108735 1y4hA 188 5.38e+01 1svy 114 5.49e+01 1svy d.109.1.1 40831 1cqyA 99 5.54e+01 1b9zA b.3.1.1 22527 1m5q1 130 5.56e+01 1j99A 293 5.57e+01 c.37.1.5 71618 1vcc 77 5.58e+01 1vcc d.121.1.1 41092 1n0lA 224 5.58e+01 b.1.11.1,b.7.2.1 79744,79745 1f6vA 91 5.69e+01 1f6vA a.49.1.1 17791 1rqpA 299 5.70e+01 b.141.1.1,c.132.1.1 97754,97755 1iv3A 152 5.73e+01 d.79.5.1 76828 1t71A 281 5.74e+01 1x7vA 99 5.79e+01 d.58.4.11 109501 1exrA 148 5.81e+01 1cll a.39.1.5 17299 1e7uA 961 5.90e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1bd3A 243 5.97e+01 1bd3A c.61.1.1 34098 1xzzA 246 6.07e+01 1nrzA 164 6.10e+01 c.38.1.1 86131 1qkkA 155 6.10e+01 1dbwA c.23.1.1 31104 1q0pA 223 6.14e+01 c.62.1.1 95507 1vqoE 178 6.18e+01 1cjaA 342 6.33e+01 1cjaA d.144.1.3 41708 2ew2A 316 6.35e+01 1sq5A 308 6.43e+01 c.37.1.6 105882 1d8hA 311 6.50e+01 1d8iA d.63.1.1 39544 1f46A 140 6.52e+01 1f46A d.129.4.1 59643 1a5t 334 6.53e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1ddwA 120 6.55e+01 1evhA b.55.1.4 27001 1xg4A 295 6.56e+01 1a41 234 6.63e+01 1a41 d.163.1.2 42174 2dg5B 190 6.72e+01 1or7A 194 6.76e+01 a.4.13.2,a.177.1.1 87332,87333 1o08A 221 6.78e+01 c.108.1.6 86525 1t0qB 330 6.91e+01 a.25.1.2 106221 2fbhA 146 6.96e+01 2bemA 170 7.00e+01 1t6nA 220 7.02e+01 c.37.1.19 106576 1o6lA 337 7.03e+01 d.144.1.7 81092 1cznA 169 7.06e+01 1rcf c.23.5.1 31181 1rypA 243 7.13e+01 1pmaA d.153.1.4 41932 1jyoE 105 7.13e+01 d.184.1.2 67487 1alvA 173 7.14e+01 1alvA a.39.1.8 17370 1e7lA 157 7.16e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1v8yA 170 7.17e+01 1xqaA 113 7.21e+01 1rzfH 235 7.33e+01 b.1.1.1,b.1.1.2 98150,98151 1j2gA 319 7.34e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1cby 259 7.34e+01 1cby d.103.1.1 40705 1x3lA 440 7.37e+01 2fsqA 243 7.50e+01 1zuwA 272 7.53e+01 1ypyA 184 7.54e+01 1f0yA 302 7.55e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 1lc5A 364 7.57e+01 c.67.1.1 73827 1ryoA 327 7.70e+01 c.94.1.2 98108 2bwvA 440 7.93e+01 2ewcA 126 7.95e+01 1ursA 402 7.97e+01 c.94.1.1 99833 1wu7A 434 7.98e+01 1pkhA 204 7.98e+01 b.85.4.1 94832 1qo0D 196 8.13e+01 1qo0D c.23.1.3 31125 1ylqA 96 8.33e+01 5pal 109 8.62e+01 1a75A a.39.1.4 17215 1neyA 247 8.71e+01 c.1.1.1 80449 1feuA 206 8.79e+01 1feuA b.53.1.1 59801 1p65A 73 8.79e+01 d.254.1.1 94156 1dwkA 156 8.79e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1oz9A 150 8.86e+01 d.92.1.15 93808 1srrA 124 8.86e+01 1dz3A c.23.1.1 31110 1t0aA 159 8.89e+01 1y9wA 140 8.92e+01