# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ytlA 174 4.59e+00 1amuA 563 4.70e+00 1amuA e.23.1.1 43351 1kmqA 184 5.14e+00 c.37.1.8 84412 1se0A 116 5.22e+00 g.52.1.1 98814 1vdnA 162 6.73e+00 1mp9A 198 6.98e+00 d.129.1.1,d.129.1.1 91385,91386 1mh1 186 7.41e+00 1eesA c.37.1.8 32002 1qnxA 209 8.14e+00 1qnxA d.111.1.1 40914 1y9qA 192 9.38e+00 1tqyB 415 9.86e+00 c.95.1.1,c.95.1.1 107247,107248 1m6dA 214 1.01e+01 d.3.1.1 84849 1zavA 180 1.08e+01 1eqfA 280 1.23e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1zin 217 1.30e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1tc1A 220 1.37e+01 1tc1A c.61.1.1 34083 1cdzA 96 1.44e+01 1cdzA c.15.1.1 30925 1b79A 119 1.45e+01 1b79A a.81.1.1 18451 1fp2A 352 1.47e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1wvfA 520 1.58e+01 1x7yB 342 1.64e+01 1i2kA 269 1.65e+01 e.17.1.1 90661 1jkmB 361 1.74e+01 1jkmA c.69.1.2 34634 2ftrA 108 1.76e+01 1w6uA 302 1.85e+01 1m7bA 184 1.88e+01 c.37.1.8 74572 1v1aA 309 1.93e+01 c.72.1.1 100249 1rzhL 281 2.01e+01 f.26.1.1 98164 2bo9B 222 2.06e+01 1mkmA 249 2.08e+01 a.4.5.33,d.110.2.2 79242,79243 2f3yA 148 2.11e+01 1ynfA 458 2.12e+01 1vk8A 106 2.21e+01 d.58.48.1 108636 2a61A 145 2.24e+01 1exrA 148 2.28e+01 1cll a.39.1.5 17299 1yrtA 364 2.30e+01 2cu5A 129 2.58e+01 1kmvA 186 2.78e+01 c.71.1.1 72757 2bmoA 447 2.81e+01 1g8sA 230 2.85e+01 c.66.1.3 90507 1kicA 339 2.93e+01 c.70.1.1 72510 2fbhA 146 2.95e+01 2b3yA 888 3.11e+01 1a8y 367 3.14e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1oaoC 729 3.14e+01 e.26.1.3 86746 2bfdB 345 3.16e+01 1no7A 604 3.16e+01 e.48.1.1 92016 1vljA 407 3.26e+01 e.22.1.2 108832 1xtoA 311 3.29e+01 1aqcA 172 3.39e+01 1x11A b.55.1.2 26983 1y51A 88 3.42e+01 1sy7A 715 3.46e+01 1ez0A 510 3.50e+01 1eyyA c.82.1.1 35385 1ymkA 175 3.55e+01 1vbiA 344 3.70e+01 2cdnA 201 3.72e+01 5pal 109 3.75e+01 1a75A a.39.1.4 17215 1zx5A 300 3.77e+01 2cw8A 537 3.90e+01 1x0pA 143 4.08e+01 1ugpB 226 4.13e+01 b.34.4.4 107832 1j99A 293 4.28e+01 c.37.1.5 71618 1bvyF 191 4.30e+01 1bvyF c.23.5.1 31207 2fsqA 243 4.41e+01 1aisA 182 4.46e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1rro 108 4.49e+01 1a75A a.39.1.4 17195 1zj6A 187 4.77e+01 1dxeA 256 4.78e+01 1dxeA c.1.12.5 29310 451c 82 4.85e+01 451c a.3.1.1 15904 1x58A 62 5.01e+01 2g2cA 167 5.13e+01 1nf3A 195 5.18e+01 c.37.1.8 85594 1u6rA 380 5.23e+01 1x8bA 289 5.34e+01 1d2zB 153 5.34e+01 1d2zB a.77.1.2 18439 1nrzA 164 5.42e+01 c.38.1.1 86131 1x3lA 440 5.48e+01 1h4vB 421 5.49e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1f60B 94 5.53e+01 1b64 d.58.12.1 39307 1rreA 200 5.57e+01 d.14.1.10 97791 1lqtA 456 5.57e+01 c.3.1.1,c.4.1.1 74198,74199 1avqA 228 5.72e+01 1avqA c.52.1.13 33326 1qhdA 398 5.84e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 2d28C 149 5.99e+01 1y4hA 188 6.00e+01 1mzhA 225 6.01e+01 c.1.10.1 79698 1uarA 285 6.06e+01 c.46.1.2,c.46.1.2 107762,107763 2c5aA 379 6.27e+01 2cfeA 162 6.45e+01 1xfjA 261 6.46e+01 d.194.1.2 109585 1nswA 105 6.47e+01 c.47.1.1 92097 2av5A 120 6.54e+01 2a2kA 175 6.72e+01 1l1qA 186 6.74e+01 c.61.1.1 77653 1le6A 123 6.90e+01 a.133.1.2 73862 1x0vA 354 6.95e+01 3psg 370 7.03e+01 1smrA b.50.1.2 26841 2cc0A 195 7.08e+01 1q2hA 69 7.20e+01 a.34.4.1 104498 1y0hA 105 7.25e+01 1y8oB 128 7.25e+01 1m7sA 484 7.26e+01 e.5.1.1 74574 2d1pC 95 7.29e+01 2ex4A 241 7.34e+01 1cznA 169 7.34e+01 1rcf c.23.5.1 31181 1ytaA 180 7.50e+01 1dqpA 230 7.53e+01 1dqnA c.61.1.1 34069 3fib 249 7.55e+01 3fib d.171.1.1 42455 1nox 205 7.75e+01 1nox d.90.1.1 40242 1eluA 390 7.77e+01 1elqA c.67.1.3 34434 1kqqA 139 7.98e+01 a.4.3.1 72885 1vhnA 318 8.08e+01 c.1.4.1 100693 1lnwA 147 8.12e+01 a.4.5.28 78104 1z9bA 135 8.19e+01 1usmA 80 8.25e+01 d.74.1.1 99876 1ggzA 148 8.27e+01 a.39.1.5 70176 1xteA 154 8.29e+01 1o7nA 449 8.39e+01 b.33.1.2,d.129.3.3 81162,81163 2fsxA 148 8.45e+01 1bjt 793 8.57e+01 1bjt e.11.1.1 43249 1z0wA 207 8.59e+01 2awiA 317 8.61e+01 2bkyA 97 8.65e+01 1n3kA 130 8.75e+01 a.77.1.4 79965 1afwA 393 8.88e+01 1afwA c.95.1.1,c.95.1.1 35900,35901