# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zj6A 187 1.34e-01 1tqyB 415 4.03e-01 c.95.1.1,c.95.1.1 107247,107248 1l1qA 186 4.05e-01 c.61.1.1 77653 1se0A 116 4.61e-01 g.52.1.1 98814 2fbhA 146 4.97e-01 1bvyF 191 5.94e-01 1bvyF c.23.5.1 31207 1vljA 407 6.11e-01 e.22.1.2 108832 1ez0A 510 6.59e-01 1eyyA c.82.1.1 35385 2g2cA 167 6.74e-01 1cznA 169 7.27e-01 1rcf c.23.5.1 31181 1ywmA 200 8.18e-01 1a8y 367 8.21e-01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1qnxA 209 8.26e-01 1qnxA d.111.1.1 40914 1mp9A 198 1.04e+00 d.129.1.1,d.129.1.1 91385,91386 1aqcA 172 1.11e+00 1x11A b.55.1.2 26983 2bngA 149 1.41e+00 1qo0D 196 1.44e+00 1qo0D c.23.1.3 31125 1zx5A 300 1.44e+00 1qfjA 232 1.70e+00 1qfjA b.43.4.2,c.25.1.1 25655,31545 2a2kA 175 1.77e+00 2bfdB 345 1.80e+00 1gq8A 319 2.27e+00 b.80.1.5 70350 1ymkA 175 2.27e+00 1qhdA 398 2.33e+00 1qhdA a.115.1.2,b.19.1.1 63324,63325 1lxjA 104 2.49e+00 d.58.48.1 84736 2b3yA 888 2.57e+00 1lqtA 456 2.77e+00 c.3.1.1,c.4.1.1 74198,74199 1yckA 175 3.06e+00 1xfjA 261 3.20e+00 d.194.1.2 109585 1x7yB 342 3.27e+00 1fdr 248 3.33e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 2c5aA 379 3.44e+00 1ru3A 732 3.45e+00 e.26.1.3 97835 1mzhA 225 3.56e+00 c.1.10.1 79698 1vr5A 547 3.61e+00 1ytlA 174 3.77e+00 1vk8A 106 4.14e+00 d.58.48.1 108636 1tc1A 220 4.19e+00 1tc1A c.61.1.1 34083 2bjvA 265 4.55e+00 2av5A 120 4.58e+00 1gk8A 475 4.71e+00 c.1.14.1,d.58.9.1 65234,65235 1ddwA 120 4.81e+00 1evhA b.55.1.4 27001 1tu5A 746 4.82e+00 1wyuA 438 5.05e+00 2fflA 756 5.06e+00 1vhnA 318 5.20e+00 c.1.4.1 100693 1guzA 310 5.28e+00 c.2.1.5,d.162.1.1 65586,65587 1kmvA 186 5.52e+00 c.71.1.1 72757 1zb9A 143 5.63e+00 1v6tA 255 5.98e+00 1avbA 226 6.53e+00 1led b.29.1.1 24158 1ako 268 6.70e+00 1ako d.151.1.1 41779 1cvrA 435 6.71e+00 1cvrA b.1.18.12,c.17.1.2 21949,31006 1nf3A 195 6.84e+00 c.37.1.8 85594 1xfkA 336 6.88e+00 1eejA 216 7.03e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1czaN 917 7.06e+00 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1i88A 389 7.10e+00 c.95.1.2,c.95.1.2 66070,66071 2cw8A 537 7.12e+00 1kmqA 184 7.15e+00 c.37.1.8 84412 1ofdA 1520 7.18e+00 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1rzhL 281 7.25e+00 f.26.1.1 98164 1x8bA 289 7.46e+00 1ye8A 178 7.50e+00 1wvfA 520 7.61e+00 1exrA 148 7.64e+00 1cll a.39.1.5 17299 1alu 186 7.72e+00 1alu a.26.1.1 16826 2fgtA 417 8.00e+00 1oc0B 51 8.02e+00 g.64.1.1 86791 451c 82 8.03e+00 451c a.3.1.1 15904 1womA 271 8.04e+00 2gatA 66 8.14e+00 1gatA g.39.1.1 45102 2f05A 105 8.35e+00 1fp2A 352 8.56e+00 1fpxA a.4.5.29,c.66.1.12 59941,59942 1d2zB 153 8.58e+00 1d2zB a.77.1.2 18439 1oaoC 729 8.61e+00 e.26.1.3 86746 1mwvA 714 8.85e+00 a.93.1.3,a.93.1.3 85161,85162 1vdnA 162 8.91e+00 1tq4A 413 9.01e+00 c.37.1.8 107201 1y51A 88 9.03e+00 1x0pA 143 9.42e+00 1bn8A 420 9.90e+00 1pcl b.80.1.1 28022 1gouA 116 1.02e+01 d.1.1.2 65429 1hkhA 279 1.06e+01 c.69.1.12 90628 1h4vB 421 1.08e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1xesA 413 1.10e+01 1hxrA 115 1.11e+01 1fwqA b.88.1.1 28392 1i2mA 216 1.13e+01 1byuA c.37.1.8 61568 1zejA 293 1.14e+01 2d00A 109 1.16e+01 1f60B 94 1.16e+01 1b64 d.58.12.1 39307 2fswA 107 1.17e+01 1jb9A 316 1.19e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1fs5A 266 1.20e+01 c.124.1.1 65044 2f3yA 148 1.21e+01 1l7aA 318 1.23e+01 c.69.1.25 77772 1x3lA 440 1.24e+01 1z15A 344 1.29e+01 1vdmA 153 1.31e+01 1wmhA 89 1.31e+01 1v8bA 479 1.33e+01 1y8oB 128 1.35e+01 1q0uA 219 1.35e+01 c.37.1.19 95512 1m7sA 484 1.37e+01 e.5.1.1 74574 1hqsA 423 1.40e+01 1iso c.77.1.1 61154 1e1oA 504 1.42e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1j0sA 157 1.44e+01 b.42.1.2 90747 1s99A 200 1.46e+01 2ftrA 108 1.48e+01 1nrzA 164 1.53e+01 c.38.1.1 86131 1fna 93 1.53e+01 1fnf b.1.2.1 21971 1cb0A 283 1.53e+01 1cb0A c.56.2.1 33790 1xtoA 311 1.53e+01 1l7lA 121 1.54e+01 b.18.1.16 77790 2bmjA 178 1.57e+01 1aisA 182 1.58e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 2bmoA 447 1.59e+01 1yrtA 364 1.60e+01 2bo9B 222 1.61e+01 1w3iA 293 1.66e+01 c.1.10.1 109152 1tedA 393 1.66e+01 c.95.1.2 106807 2cy2A 174 1.68e+01 1vcc 77 1.74e+01 1vcc d.121.1.1 41092 1yqtA 538 1.78e+01 1z0jA 170 1.79e+01 1z0wA 207 1.79e+01 1qlmA 316 1.79e+01 1qlmA d.147.1.1 41765 1m2dA 110 1.79e+01 c.47.1.11 78476 1ydlA 79 1.81e+01 1xxlA 239 1.83e+01 1r1tA 122 1.83e+01 a.4.5.5 104769 1eexA 554 1.86e+01 1dioA c.1.19.3 29650 1lhpA 312 1.87e+01 c.72.1.5 77960 2f1rA 171 1.91e+01 1ynfA 458 1.97e+01 1g8sA 230 1.98e+01 c.66.1.3 90507 1v71A 323 1.99e+01 1vrvA 101 2.02e+01 1i0lA 221 2.03e+01 c.61.1.1 71096 1pmi 440 2.05e+01 1pmi b.82.1.3 28114 1hi9A 274 2.08e+01 1hi9A c.99.1.1 61063 1cdzA 96 2.11e+01 1cdzA c.15.1.1 30925 1eluA 390 2.12e+01 1elqA c.67.1.3 34434 1zu4A 320 2.13e+01 1e8cA 498 2.13e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2f69A 261 2.20e+01 1obbA 480 2.25e+01 c.2.1.5,d.162.1.2 86760,86761 1y81A 138 2.27e+01 1kicA 339 2.27e+01 c.70.1.1 72510 1qkkA 155 2.30e+01 1dbwA c.23.1.1 31104 2gmfA 127 2.31e+01 2gmfA a.26.1.2 16849 1uzmA 247 2.32e+01 1hl2A 297 2.33e+01 c.1.10.1 83581 1ss4A 153 2.33e+01 d.32.1.6 105976 2gw6A 123 2.34e+01 1qf9A 194 2.36e+01 1zin c.37.1.1 31848 1qvcA 145 2.37e+01 3ullA b.40.4.3 25284 1mw9X 592 2.43e+01 e.10.1.1 91480 1bbhA 131 2.43e+01 1bbhA a.24.3.2 16546 8dfr 189 2.44e+01 1aoeA c.71.1.1 34895 1zin 217 2.46e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1b79A 119 2.46e+01 1b79A a.81.1.1 18451 1n83A 270 2.48e+01 a.123.1.1 80276 2fsjA 346 2.53e+01 1jy1A 464 2.57e+01 d.136.1.3,d.136.1.3 67438,67439 1vrmA 325 2.60e+01 1mh1 186 2.63e+01 1eesA c.37.1.8 32002 1umkA 275 2.63e+01 2atrA 138 2.64e+01 1g73C 121 2.64e+01 1g3fA g.52.1.1 45375 1ohlA 342 2.84e+01 c.1.10.3 87035 1b9oA 123 2.88e+01 3lzt d.2.1.2 36597 1quuA 250 2.89e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1nriA 306 2.90e+01 c.80.1.3 86123 1gpuA 680 2.91e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1usgA 346 2.92e+01 c.93.1.1 99864 1bd3A 243 2.92e+01 1bd3A c.61.1.1 34098 2ex4A 241 2.96e+01 2cxvA 219 3.00e+01 1yjsA 419 3.01e+01 1zavA 180 3.04e+01 1yzvA 204 3.06e+01 1q6uA 245 3.06e+01 d.26.1.1 95998 1q7zA 566 3.09e+01 c.1.21.2,c.1.26.1 96090,96091 1amuA 563 3.09e+01 1amuA e.23.1.1 43351 2go7A 207 3.10e+01 1z06A 189 3.14e+01 1ptf 88 3.18e+01 1ptf d.94.1.1 40549 1s2wA 295 3.19e+01 c.1.12.7 98407 1xb2B 291 3.20e+01 1cs1A 386 3.21e+01 1ibjA c.67.1.3 34399 2bhuA 602 3.24e+01 2evwX 166 3.28e+01 1agjA 242 3.29e+01 1agjA b.47.1.1 25827 1ituA 369 3.41e+01 c.1.9.7 71423 1tg7A 971 3.45e+01 1jsdA 319 3.56e+01 b.19.1.2 63258 2d28C 149 3.63e+01 1gpr 162 3.68e+01 1gpr b.84.3.1 28267 2gh1A 301 3.69e+01 1j5pA 253 3.69e+01 d.81.1.3,c.2.1.3 71577,83092 1ms9A 648 3.72e+01 b.29.1.15,b.68.1.1 85088,85089 2ae0X 345 3.73e+01 1h16A 759 3.75e+01 c.7.1.1 76462 1lw7A 365 3.80e+01 c.26.1.3,c.37.1.1 74295,74296 1ve6A 582 3.81e+01 1zsyA 357 3.81e+01 2pia 321 3.82e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1dp4A 435 3.85e+01 1dp4A c.93.1.1 35710 2atzA 180 3.88e+01 1rypB 250 3.90e+01 1rypB d.153.1.4 41933 1n6aA 259 3.93e+01 b.76.2.1,b.85.7.1 80121,80122 2cx5A 158 3.97e+01 1sviA 195 3.98e+01 c.37.1.8 106048 2f06A 144 3.98e+01 1n40A 396 3.99e+01 a.104.1.1 79977 1q2hA 69 4.08e+01 a.34.4.1 104498 2gaeA 346 4.10e+01 1m7bA 184 4.10e+01 c.37.1.8 74572 1m7vA 363 4.16e+01 d.174.1.1 78748 1lv3A 68 4.17e+01 g.39.1.9 78231 1mugA 168 4.17e+01 1mugA c.18.1.2 31030 1e8aA 91 4.18e+01 1b4cA a.39.1.2 17188 1kqqA 139 4.20e+01 a.4.3.1 72885 1lm8V 160 4.21e+01 b.3.3.1 74035 1nfp 228 4.22e+01 1nfp c.1.16.2 29555 1tadA 324 4.28e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1d4xG 126 4.29e+01 1d0nA d.109.1.1 59109 1no7A 604 4.33e+01 e.48.1.1 92016 1yy7A 213 4.38e+01 1dmhA 311 4.39e+01 1dmhA b.3.6.1 22633 1zboA 210 4.40e+01 2c4nA 250 4.44e+01 1fnnA 389 4.45e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 2fliA 220 4.54e+01 2cc0A 195 4.54e+01 1usmA 80 4.59e+01 d.74.1.1 99876 1ikpA 613 4.73e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1yqdA 366 4.79e+01 1nbwA 607 4.80e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1li4A 432 4.81e+01 c.2.1.4,c.23.12.3 84616,84617 8abp 306 4.82e+01 8abp c.93.1.1 35647 1nh1A 330 4.84e+01 e.45.1.1 91871 1mj5A 302 4.90e+01 c.69.1.8 91285 2afbA 351 4.94e+01 1ggzA 148 4.97e+01 a.39.1.5 70176 2bmfA 451 5.02e+01 1kl1A 419 5.06e+01 c.67.1.4 72663 1lldA 319 5.07e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 2bemA 170 5.10e+01 1eceA 358 5.14e+01 1eceA c.1.8.3 28813 1qysA 106 5.14e+01 k.41.1.1 96603 2ayuA 417 5.14e+01 1usrA 454 5.17e+01 b.68.1.1 99881 1oi7A 288 5.18e+01 c.2.1.8,c.23.4.1 87049,87050 1m1nB 522 5.19e+01 c.92.2.3 78418 2erxA 172 5.22e+01 1g8aA 227 5.25e+01 c.66.1.3 90506 1tuaA 191 5.27e+01 d.51.1.1,d.51.1.1 107321,107322 1n0qA 93 5.28e+01 k.37.1.1 79754 1mvlA 209 5.28e+01 c.34.1.1 85146 1o59A 355 5.32e+01 b.18.1.22,b.18.1.22 92495,92496 1pvvA 315 5.44e+01 c.78.1.1,c.78.1.1 95190,95191 1v6zA 228 5.44e+01 1wpoA 256 5.47e+01 1lay b.57.1.1 27012 2cveA 191 5.51e+01 5pal 109 5.54e+01 1a75A a.39.1.4 17215 1r5tA 142 5.58e+01 c.97.1.1 104812 1l1sA 113 5.58e+01 c.114.1.1 73484 1iwmA 186 5.59e+01 b.125.1.2 83758 1z21A 112 5.59e+01 1kg0C 136 5.60e+01 d.169.1.1 72445 1uarA 285 5.67e+01 c.46.1.2,c.46.1.2 107762,107763 2bl0B 145 5.68e+01 1mo0A 275 5.68e+01 c.1.1.1 79329 1pv1A 299 5.76e+01 1d8hA 311 5.77e+01 1d8iA d.63.1.1 39544 2bo4A 397 5.78e+01 2f5gA 133 5.79e+01 1ua7A 422 5.79e+01 b.71.1.1,c.1.8.1 107759,107760 2fmlA 273 5.80e+01 1zetA 388 5.83e+01 2pii 112 5.84e+01 2pii d.58.5.1 39071 1xx6A 191 5.87e+01 1yqhA 109 5.88e+01 1f20A 435 5.92e+01 b.43.4.1,c.25.1.4 64932,64933 1vl5A 260 5.92e+01 c.66.1.41 108720 1w0hA 204 5.93e+01 1m3qA 317 5.98e+01 a.96.1.3,d.129.1.2 91184,91185 1kcqA 104 5.98e+01 d.109.1.1 68449 1v73A 342 5.98e+01 1z7gA 217 6.00e+01 2hvm 273 6.01e+01 1cnv c.1.8.5 28985 2f8lA 344 6.01e+01 1ed1A 135 6.02e+01 1hiwA a.61.1.1 18130 1s7zA 117 6.06e+01 a.159.3.1 98715 1w66A 232 6.08e+01 1w96A 554 6.12e+01 1x3sA 195 6.19e+01 1le6A 123 6.19e+01 a.133.1.2 73862 2cvjA 180 6.20e+01 1n1tA 641 6.26e+01 b.29.1.15,b.68.1.1 79821,79822 1kbvA 327 6.31e+01 b.6.1.3,b.6.1.3 68395,68396 1xeaA 323 6.34e+01 c.2.1.3,d.81.1.5 109572,109573 2dg5A 366 6.34e+01 1sheA 103 6.40e+01 d.274.1.1 105551 1j58A 385 6.42e+01 b.82.1.2 71531 1a2pA 110 6.42e+01 1b20A d.1.1.2 36140 1kaeA 434 6.44e+01 c.82.1.2 72247 1x0vA 354 6.45e+01 2g58A 121 6.50e+01 1uheA 97 6.50e+01 1u6eA 335 6.52e+01 1omhA 293 6.53e+01 d.89.1.5 93348 1u9cA 224 6.53e+01 2a4aA 281 6.60e+01 1ryoA 327 6.61e+01 c.94.1.2 98108 1wz8A 264 6.64e+01 2gcc 70 6.64e+01 2gcc d.10.1.2 37484 5rubA 490 6.66e+01 1burA c.1.14.1,d.58.9.1 29382,39288 1yyaA 250 6.77e+01 1v8aA 265 6.80e+01 c.72.1.2 100494 1n13A 52 6.84e+01 d.155.1.2 85248 1zcjA 463 6.84e+01 2fblA 153 6.84e+01 1ja1A 622 6.87e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1gx1A 160 6.88e+01 d.79.5.1 70675 1lj9A 144 6.90e+01 a.4.5.28 78035 1whzA 70 6.93e+01 1cjcA 460 6.95e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1uv4A 293 6.98e+01 1ygaA 342 7.00e+01 1gegA 256 7.11e+01 1ybvA c.2.1.2 29888 2vhbA 146 7.11e+01 2vhbA a.1.1.2 15629 1c3mA 147 7.20e+01 1jotA b.77.3.1 27983 1w77A 228 7.20e+01 1tbd 134 7.23e+01 2tbd d.89.1.1 40240 2as9A 210 7.25e+01 1jf9A 408 7.28e+01 1c0nA c.67.1.3 62931 1psrA 100 7.29e+01 1psrA a.39.1.2 17180 1uz8B 212 7.38e+01 b.1.1.1,b.1.1.2 108168,108169 2cqeA 98 7.40e+01 1tc5A 194 7.51e+01 c.110.1.1 106752 2fhwA 24 7.52e+01 1tn6B 437 7.57e+01 1thtA 305 7.63e+01 1thtA c.69.1.13 34711 1r2rA 248 7.69e+01 c.1.1.1 96875 3psg 370 7.70e+01 1smrA b.50.1.2 26841 2a46A 238 7.74e+01 1vbiA 344 7.75e+01 2af4C 333 7.83e+01 1y0zA 330 7.84e+01 1zmaA 118 7.87e+01 1pg4A 652 7.92e+01 e.23.1.1 88067 1pjxA 314 8.04e+01 b.68.6.1 104167 1bueA 265 8.10e+01 1btl e.3.1.1 42727 1fuxA 166 8.10e+01 1fjjA b.17.1.2 60034 1shwB 181 8.11e+01 b.18.1.4 105563 1zlqA 502 8.11e+01 1qzmA 94 8.13e+01 c.37.1.20 96651 2bjdA 101 8.14e+01 1x9gA 200 8.17e+01 c.33.1.3 109527 1vplA 256 8.18e+01 2fa8A 105 8.24e+01 1lm8C 96 8.27e+01 d.42.1.1 74034 2axcA 264 8.31e+01 1tmxA 293 8.35e+01 2dfkA 402 8.35e+01 1qgoA 264 8.37e+01 1qgoA c.92.1.2 35596 1h80A 464 8.37e+01 b.80.1.8 65714 1rqpA 299 8.41e+01 b.141.1.1,c.132.1.1 97754,97755 1tbaA 67 8.43e+01 1tbaA a.15.1.1 16380 1tfzA 424 8.45e+01 d.32.1.3,d.32.1.3 106886,106887 1v1aA 309 8.51e+01 c.72.1.1 100249 1vraB 215 8.54e+01 1n8vA 112 8.55e+01 a.118.21.1 85457 1lnwA 147 8.62e+01 a.4.5.28 78104 1ogiA 303 8.62e+01 b.43.4.2,c.25.1.1 92914,92915 1qdeA 224 8.63e+01 1qvaA c.37.1.19 32410 1vioA 243 8.69e+01 d.265.1.3,d.66.1.5 100762,100763 1wmdA 434 8.76e+01 b.18.1.20,c.41.1.1 109408,109409 1q40B 219 8.87e+01 d.17.4.2 95771 1sbzA 197 8.88e+01 1jkmB 361 8.89e+01 1jkmA c.69.1.2 34634 2cxxA 190 8.90e+01 1yzyA 413 8.91e+01 2c4bA 143 8.94e+01 1e2kA 331 8.97e+01 1qhiA c.37.1.1 31854