# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b3yA 888 1.03e+00 1aqcA 172 1.04e+00 1x11A b.55.1.2 26983 2au5A 139 1.14e+00 2f3yA 148 1.52e+00 1nox 205 1.62e+00 1nox d.90.1.1 40242 1jbkA 195 2.33e+00 c.37.1.20 71631 1ddwA 120 3.57e+00 1evhA b.55.1.4 27001 1js8A 394 3.63e+00 a.86.1.1,b.112.1.1 67219,67220 2cy2A 174 4.09e+00 1exrA 148 4.18e+00 1cll a.39.1.5 17299 1jboB 172 4.24e+00 a.1.1.3 84151 1d8hA 311 4.72e+00 1d8iA d.63.1.1 39544 1ynfA 458 4.79e+00 1se0A 116 5.15e+00 g.52.1.1 98814 1q2hA 69 6.15e+00 a.34.4.1 104498 1fna 93 6.35e+00 1fnf b.1.2.1 21971 2a72A 146 6.40e+00 1vk8A 106 6.80e+00 d.58.48.1 108636 451c 82 7.96e+00 451c a.3.1.1 15904 1ywmA 200 8.32e+00 1vdnA 162 8.96e+00 1ye8A 178 9.10e+00 1kmqA 184 9.70e+00 c.37.1.8 84412 1pzqA 60 9.73e+00 a.34.3.1 95466 1es9A 232 9.93e+00 1wab c.23.10.3 31340 1v2xA 194 1.04e+01 c.116.1.1 100274 1wa5C 960 1.06e+01 2fmlA 273 1.09e+01 1rp4A 389 1.15e+01 a.227.1.1 105027 1cpcB 172 1.18e+01 1qgwC a.1.1.3 15644 1txlA 215 1.24e+01 b.60.1.4 107429 1quuA 250 1.26e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1u6eA 335 1.28e+01 1eqfA 280 1.28e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1f7cA 231 1.32e+01 1f7cA a.116.1.1 19107 1cznA 169 1.34e+01 1rcf c.23.5.1 31181 1r5lA 262 1.38e+01 a.5.3.1,c.13.1.1 97099,97100 1b9oA 123 1.39e+01 3lzt d.2.1.2 36597 2ayuA 417 1.39e+01 2fbhA 146 1.45e+01 3znf 30 1.49e+01 g.37.1.1 45049 1hw7A 255 1.65e+01 1i7fA d.193.1.1 61297 1ozjA 144 1.66e+01 d.164.1.1 93846 1y2kA 349 1.67e+01 2a9sA 171 1.71e+01 1kmvA 186 1.80e+01 c.71.1.1 72757 1lvfA 110 1.82e+01 a.47.2.1 74280 1lmiA 131 1.83e+01 b.1.19.1 78098 1ggzA 148 1.85e+01 a.39.1.5 70176 1xm7A 195 1.93e+01 1f60B 94 1.94e+01 1b64 d.58.12.1 39307 1q4uA 151 1.98e+01 d.38.1.5 95828 1qsmA 152 2.01e+01 1qsmA d.108.1.1 40808 1kqqA 139 2.03e+01 a.4.3.1 72885 1h97A 147 2.06e+01 1h97A a.1.1.2 60812 2g7uA 257 2.11e+01 1v73A 342 2.15e+01 1mp9A 198 2.24e+01 d.129.1.1,d.129.1.1 91385,91386 1oc0B 51 2.47e+01 g.64.1.1 86791 2d00A 109 2.49e+01 2gw6A 123 2.52e+01 1tzyC 136 2.65e+01 a.22.1.1 107532 2bycA 137 2.73e+01 1izmA 184 2.83e+01 a.199.1.1 90725 1gouA 116 2.86e+01 d.1.1.2 65429 1tc1A 220 2.90e+01 1tc1A c.61.1.1 34083 1s12A 94 2.91e+01 1jmvA 141 2.99e+01 c.26.2.4 66897 1rzhL 281 3.15e+01 f.26.1.1 98164 1ir6A 424 3.19e+01 c.107.1.2 71342 1o59A 355 3.19e+01 b.18.1.22,b.18.1.22 92495,92496 1irdB 146 3.32e+01 a.1.1.2 66287 2ct5A 73 3.33e+01 1vcc 77 3.52e+01 1vcc d.121.1.1 41092 1nhkL 144 3.53e+01 1npk d.58.6.1 39142 1zj6A 187 3.58e+01 1k8kA 418 3.58e+01 c.55.1.1,c.55.1.1 68305,68306 1x42A 232 3.63e+01 2f4mB 61 3.65e+01 1lf6A 684 3.74e+01 a.102.1.5,b.30.5.5 77918,77919 1hxrA 115 3.79e+01 1fwqA b.88.1.1 28392 1j96A 323 3.85e+01 c.1.7.1 71616 1alu 186 3.95e+01 1alu a.26.1.1 16826 1bgf 124 4.04e+01 1bgf a.90.1.1 18537 1mkfA 382 4.05e+01 b.116.1.1 79232 1y8oB 128 4.06e+01 1w0nA 131 4.07e+01 1zcbA 362 4.14e+01 2bmjA 178 4.14e+01 1ydlA 79 4.15e+01 1no7A 604 4.21e+01 e.48.1.1 92016 1h7eA 245 4.24e+01 c.68.1.13 60717 1zkdA 387 4.46e+01 2av5A 120 4.47e+01 2a61A 145 4.85e+01 1hrnA 337 4.96e+01 1smrA b.50.1.2 26869 2cqfA 63 5.05e+01 2bh1A 250 5.09e+01 1womA 271 5.12e+01 1mvlA 209 5.18e+01 c.34.1.1 85146 1i0lA 221 5.24e+01 c.61.1.1 71096 1wy9A 147 5.25e+01 2freA 200 5.54e+01 1z8sA 146 5.56e+01 1ko6A 187 5.57e+01 b.119.1.1 77471 1tw7A 99 5.59e+01 2exnA 136 5.68e+01 2g2cA 167 5.78e+01 1vraB 215 5.97e+01 1js3A 486 5.98e+01 c.67.1.6 67215 1kxpD 458 6.14e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 2ck3G 272 6.21e+01 1oboA 169 6.24e+01 c.23.5.1 86776 1htwA 158 6.30e+01 c.37.1.18 71083 1ohvA 472 6.34e+01 c.67.1.4 93031 1k77A 260 6.39e+01 c.1.15.5 72096 1zboA 210 6.43e+01 2c1lA 358 6.46e+01 1my7A 114 6.55e+01 b.1.18.1 79675 2fhwA 24 6.64e+01 1ct5A 256 6.79e+01 1ct5A c.1.6.2 28663 1jg5A 83 6.84e+01 d.205.1.1 66666 1bvyF 191 7.07e+01 1bvyF c.23.5.1 31207 1x0pA 143 7.09e+01 1w0hA 204 7.12e+01 1dp4A 435 7.31e+01 1dp4A c.93.1.1 35710 1fkqA 124 7.47e+01 3lzt d.2.1.2 36601 1xg8A 111 7.47e+01 2cw8A 537 7.53e+01 2cxvA 219 7.54e+01 1ua7A 422 7.58e+01 b.71.1.1,c.1.8.1 107759,107760 1gq8A 319 7.72e+01 b.80.1.5 70350 1ydgA 211 7.85e+01 1r2rA 248 8.07e+01 c.1.1.1 96875 1n13A 52 8.08e+01 d.155.1.2 85248 1bl0A 129 8.15e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1pq1A 196 8.24e+01 f.1.4.1 94986 1ja1A 622 8.28e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1i2kA 269 8.29e+01 e.17.1.1 90661 1fe0A 68 8.51e+01 1cc8A d.58.17.1 39345 2bkyA 97 8.63e+01 1fvpA 231 8.66e+01 1nfp c.1.16.2 29556 1rreA 200 8.77e+01 d.14.1.10 97791 2bidA 197 8.83e+01 2bidA f.1.4.1 43398 1eayC 74 8.88e+01 1eayC d.58.24.1 39386