# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mdbA 539 1.02e+00 e.23.1.1 79008 1h16A 759 2.06e+00 c.7.1.1 76462 1wvfA 520 2.42e+00 1hl9A 449 2.99e+00 b.71.1.3,c.1.8.11 90650,90651 1ru3A 732 3.08e+00 e.26.1.3 97835 1ye8A 178 3.23e+00 1h8eD 482 3.78e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1auk 489 4.20e+00 1auk c.76.1.2 35030 1xfkA 336 4.79e+00 1vl2A 421 4.81e+00 c.26.2.1,d.210.1.1 108708,108709 1epwA 1290 5.00e+00 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1jb9A 316 5.25e+00 1fnc b.43.4.2,c.25.1.1 62840,62841 1ep3B 262 5.56e+00 1ep2B b.43.4.2,c.25.1.3 25664,31554 1uf5A 303 5.95e+00 d.160.1.2 107808 1xocA 520 6.06e+00 1eejA 216 6.32e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1ztpA 251 6.47e+00 1zlqA 502 6.68e+00 1ve6A 582 7.29e+00 1n8fA 350 7.76e+00 c.1.10.4 85397 1jndA 420 8.59e+00 c.1.8.5,d.26.3.1 71757,71758 1eq2A 310 9.39e+00 1eq2A c.2.1.2 29814 1ppjA 446 9.90e+00 d.185.1.1,d.185.1.1 104252,104253 1womA 271 9.92e+00 2ffeA 311 1.02e+01 1reqB 637 1.09e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1cb0A 283 1.12e+01 1cb0A c.56.2.1 33790 1vheA 373 1.14e+01 b.49.3.1,c.56.5.4 100669,100670 1yxcA 292 1.15e+01 1lqtA 456 1.15e+01 c.3.1.1,c.4.1.1 74198,74199 1q8iA 783 1.17e+01 c.55.3.5,e.8.1.1 96208,96209 1kw3B 292 1.18e+01 d.32.1.3,d.32.1.3 77549,77550 1hnjA 317 1.19e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1xesA 413 1.24e+01 1ccwB 483 1.29e+01 1cb7B c.1.19.2 29646 1nu5A 370 1.30e+01 c.1.11.2,d.54.1.1 92183,92184 1iz5A 249 1.33e+01 d.131.1.2,d.131.1.2 83834,83835 2basA 431 1.33e+01 1zj8A 566 1.39e+01 1zd3A 555 1.40e+01 1ja1A 622 1.40e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1xtoA 311 1.47e+01 1o66A 275 1.54e+01 c.1.12.8 92547 1tyjA 170 1.59e+01 1f0xA 571 1.61e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1b9oA 123 1.63e+01 3lzt d.2.1.2 36597 1u3wA 374 1.64e+01 2fokA 579 1.70e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 2bo9B 222 1.72e+01 1qy6A 274 1.74e+01 b.47.1.1 96574 1fl2A 310 1.77e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1pl8A 356 1.78e+01 b.35.1.2,c.2.1.1 94878,94879 1ez0A 510 1.80e+01 1eyyA c.82.1.1 35385 1bqcA 302 1.85e+01 1bqcA c.1.8.3 28831 1a9xB 379 1.88e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1zk4A 251 1.91e+01 1k7hA 476 2.01e+01 c.76.1.1 72101 1zfjA 491 2.04e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1ixh 321 2.05e+01 1ixh c.94.1.1 35761 1onwA 390 2.09e+01 b.92.1.7,c.1.9.13 87172,87173 1y8qA 346 2.14e+01 2napA 723 2.15e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1vdnA 162 2.21e+01 1riiA 265 2.23e+01 1xt8A 292 2.26e+01 2fbhA 146 2.32e+01 1wy5A 317 2.34e+01 1zj6A 187 2.36e+01 1v5dA 386 2.39e+01 1nrwA 288 2.40e+01 c.108.1.10 86128 2bfwA 200 2.50e+01 1x0pA 143 2.70e+01 1h8eA 510 2.72e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1to6A 371 2.77e+01 c.141.1.1 107170 1wvgA 359 2.78e+01 1tedA 393 2.87e+01 c.95.1.2 106807 2bjbA 462 2.90e+01 1ta8A 332 2.92e+01 1w2yA 229 2.97e+01 a.204.1.1 109140 1l0qA 391 3.08e+01 b.1.3.1,b.69.2.3 77644,77645 1zczA 464 3.13e+01 1zy9A 564 3.17e+01 1bf2 750 3.17e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 2eu9A 355 3.18e+01 1m1nB 522 3.18e+01 c.92.2.3 78418 2bnuA 203 3.19e+01 1kvkA 395 3.22e+01 d.14.1.5,d.58.26.3 73060,73061 1tdzA 272 3.24e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1anf 370 3.24e+01 4mbp c.94.1.1 35776 1ydwA 362 3.27e+01 2cmuA 342 3.27e+01 1hleA 345 3.28e+01 1ovaA e.1.1.1 42618 1w78A 422 3.30e+01 1ht6A 405 3.31e+01 b.71.1.1,c.1.8.1 83629,83630 1ivyA 452 3.35e+01 1ivyA c.69.1.5 34654 1yifA 533 3.38e+01 1exrA 148 3.38e+01 1cll a.39.1.5 17299 1kcmA 270 3.39e+01 d.129.3.4 72300 1b65A 375 3.41e+01 1b65A d.154.1.1 42020 1r64A 481 3.42e+01 b.18.1.20,c.41.1.1 97140,97141 1ktbA 405 3.46e+01 b.71.1.1,c.1.8.1 72960,72961 1lycA 343 3.49e+01 a.93.1.1 74344 1obbA 480 3.57e+01 c.2.1.5,d.162.1.2 86760,86761 1r2rA 248 3.58e+01 c.1.1.1 96875 1v0wA 506 3.59e+01 d.136.1.2,d.136.1.2 108220,108221 1ojrA 274 3.61e+01 c.74.1.1 93147 1ogiA 303 3.64e+01 b.43.4.2,c.25.1.1 92914,92915 2bs3C 256 3.67e+01 1aqcA 172 3.68e+01 1x11A b.55.1.2 26983 2f6hX 419 3.68e+01 1qo0D 196 3.70e+01 1qo0D c.23.1.3 31125 2bz6H 254 3.75e+01 2bcqA 335 3.77e+01 2gu3A 136 3.78e+01 1xfjA 261 3.84e+01 d.194.1.2 109585 1i9zA 347 3.97e+01 1i9yA d.151.1.2 62102 1j31A 262 4.13e+01 d.160.1.2 90808 1hfeL 421 4.15e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1hp1A 516 4.16e+01 d.114.1.1,d.159.1.2 70976,70977 1aisA 182 4.20e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1zmdA 474 4.21e+01 1e8cA 498 4.31e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2a2kA 175 4.43e+01 1n0qA 93 4.46e+01 k.37.1.1 79754 1eexG 173 4.47e+01 1dioG a.23.2.1 16490 2bsxA 253 4.56e+01 1oi7A 288 4.64e+01 c.2.1.8,c.23.4.1 87049,87050 1q4gA 553 4.65e+01 a.93.1.2,g.3.11.1 95789,95790 1gq6A 313 4.71e+01 c.42.1.1 70341 1ku0A 388 4.72e+01 c.69.1.18 72994 1m2kA 249 4.75e+01 c.31.1.5 84754 1h70A 255 4.75e+01 1h70A d.126.1.3 60711 1mp9A 198 4.76e+01 d.129.1.1,d.129.1.1 91385,91386 1x1iA 752 4.76e+01 1vm9A 111 4.78e+01 b.33.1.1 108886 1txdA 385 4.79e+01 a.87.1.1,b.55.1.1 107422,107423 1qe3A 489 4.80e+01 2bce c.69.1.1 34630 1se0A 116 4.81e+01 g.52.1.1 98814 1txnA 328 4.81e+01 1nox 205 4.85e+01 1nox d.90.1.1 40242 1odmA 331 4.85e+01 b.82.2.1 86875 1ynfA 458 4.89e+01 1xr4A 509 4.90e+01 1jetA 517 4.92e+01 1jevA c.94.1.1 35718 1w5fA 353 4.93e+01 1ncwL 219 4.95e+01 b.1.1.1,b.1.1.2 85557,85558 1ex0A 731 4.96e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1b79A 119 4.98e+01 1b79A a.81.1.1 18451 1p1xA 260 4.99e+01 c.1.10.1 104060 1t1gA 364 5.04e+01 c.41.1.2 106246 1cznA 169 5.09e+01 1rcf c.23.5.1 31181 1ivg 388 5.10e+01 2qwc b.68.1.1 27578 1zcbA 362 5.14e+01 1qhdA 398 5.18e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 2gnpA 266 5.20e+01 1cl8A 276 5.21e+01 1ckqA c.52.1.1 33230 1lcyA 325 5.29e+01 b.36.1.4,b.47.1.1 73834,73835 1x9dA 538 5.29e+01 1vf8A 377 5.31e+01 1jnrA 643 5.36e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1u9cA 224 5.36e+01 1orvA 728 5.37e+01 b.70.3.1,c.69.1.24 87354,87355 1wz9A 375 5.42e+01 1gz8A 299 5.44e+01 d.144.1.7 83405 1z0wA 207 5.46e+01 1d2zB 153 5.47e+01 1d2zB a.77.1.2 18439 1n62C 288 5.48e+01 d.87.2.1,d.145.1.3 80094,80095 1jjfA 268 5.51e+01 c.69.1.2 66765 1x1nA 524 5.55e+01 1ycsB 239 5.58e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1oaoC 729 5.60e+01 e.26.1.3 86746 1cs1A 386 5.65e+01 1ibjA c.67.1.3 34399 1txuA 273 5.68e+01 a.222.1.1 107439 2cunA 410 5.69e+01 2fjbA 643 5.71e+01 1f8rA 498 5.72e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1yq2A 1024 5.75e+01 1eluA 390 5.80e+01 1elqA c.67.1.3 34434 1vk8A 106 5.85e+01 d.58.48.1 108636 1alvA 173 5.90e+01 1alvA a.39.1.8 17370 1lc5A 364 5.91e+01 c.67.1.1 73827 1v1aA 309 5.93e+01 c.72.1.1 100249 1ydlA 79 5.95e+01 1g4mA 393 6.01e+01 b.1.18.11,b.1.18.11 65143,65144 1ee8A 266 6.03e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1dywA 173 6.13e+01 2cpl b.62.1.1 27505 1a99A 344 6.13e+01 1pot c.94.1.1 35812 1vj7A 393 6.14e+01 a.211.1.1,d.218.1.8 100801,100802 2cw6A 298 6.21e+01 1xd8A 289 6.33e+01 1f0kA 364 6.40e+01 1f0kA c.87.1.2 35465 1juvA 193 6.42e+01 c.71.1.1 90912 2fv7A 331 6.43e+01 1tn6B 437 6.43e+01 1bvyF 191 6.44e+01 1bvyF c.23.5.1 31207 1sazA 381 6.47e+01 1sqnA 261 6.48e+01 a.123.1.1 105944 2cy2A 174 6.48e+01 1m6pA 152 6.57e+01 1m6pA b.64.1.1 27519 1xv5A 401 6.62e+01 1auiB 169 6.63e+01 1auiB a.39.1.5 17325 2c1vA 338 6.69e+01 1q1rA 431 6.74e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1b0uA 262 6.76e+01 1b0uA c.37.1.12 32370 1xknA 355 6.78e+01 1ozhA 566 6.79e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2bycA 137 6.85e+01 1fukA 165 6.87e+01 1fukA c.37.1.19 32409 1p5dX 463 6.89e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1wyuA 438 6.93e+01 1m7yA 435 6.95e+01 c.67.1.4 78761 8abp 306 7.02e+01 8abp c.93.1.1 35647 1xo0A 324 7.03e+01 1ry6A 360 7.07e+01 c.37.1.9 98090 1w77A 228 7.08e+01 1evyA 366 7.10e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1yoeA 322 7.17e+01 1h6dA 433 7.18e+01 c.2.1.3,d.81.1.5 65656,65657 1qwkA 317 7.18e+01 c.1.7.1 96482 1ggzA 148 7.19e+01 a.39.1.5 70176 1at0 145 7.25e+01 1at0 b.86.1.1 28374 1yphC 131 7.26e+01 2bitX 165 7.28e+01 1hw7A 255 7.30e+01 1i7fA d.193.1.1 61297 1bd8 156 7.37e+01 1bd8 d.211.1.1 19157 1iwmA 186 7.37e+01 b.125.1.2 83758 1ju2A 536 7.42e+01 c.3.1.2,d.16.1.1 77169,77170 1k6dA 220 7.43e+01 c.124.1.2 72082 2al2A 436 7.46e+01 1w5qA 337 7.49e+01 1r9lA 309 7.52e+01 c.94.1.1 97262 1t1uA 639 7.54e+01 1bueA 265 7.66e+01 1btl e.3.1.1 42727 1z52A 470 7.70e+01 1kqpA 271 7.74e+01 c.26.2.1 72883 1qksA 567 7.74e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1woqA 267 7.79e+01 c.55.1.10,c.55.1.10 109462,109463 1l0wA 580 7.84e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1fuxA 166 7.95e+01 1fjjA b.17.1.2 60034 1y9zA 441 7.99e+01 1h54A 754 7.99e+01 a.102.1.4,b.30.5.3 60634,60635 1gvjA 146 8.02e+01 a.4.5.21 90525 2bbkH 355 8.11e+01 2bbkH b.69.2.1 27634 2ftrA 108 8.11e+01 1qhfA 240 8.22e+01 1qhfA c.60.1.1 33960 1k0dA 260 8.25e+01 a.45.1.1,c.47.1.5 67930,67931 2f01A 127 8.27e+01 1ub0A 258 8.29e+01 c.72.1.2 88394 1d3cA 686 8.29e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1l1qA 186 8.36e+01 c.61.1.1 77653 2fsjA 346 8.37e+01 1t0bA 252 8.47e+01 c.23.16.6 106199 2g39A 497 8.56e+01 1x54A 434 8.58e+01 2fp8A 322 8.60e+01 2d0oA 610 8.64e+01 1mj5A 302 8.74e+01 c.69.1.8 91285 1nr0A 611 8.76e+01 b.69.4.1,b.69.4.1 86078,86079 1gr0A 367 8.76e+01 c.2.1.3,d.81.1.3 70379,70380 1jmsA 381 8.77e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1zboA 210 8.83e+01 1qwnA 1045 8.89e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1vjjA 692 8.93e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1nd6A 354 9.00e+01 c.60.1.2 80407