# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f3yA 148 1.18e+00 1cvrA 435 1.61e+00 1cvrA b.1.18.12,c.17.1.2 21949,31006 2g2cA 167 2.53e+00 1exrA 148 2.61e+00 1cll a.39.1.5 17299 1ymkA 175 3.94e+00 1x0pA 143 4.26e+00 1se0A 116 4.39e+00 g.52.1.1 98814 2a2kA 175 4.68e+00 1kmqA 184 5.75e+00 c.37.1.8 84412 1xtoA 311 5.83e+00 1vdnA 162 6.11e+00 1ggzA 148 7.18e+00 a.39.1.5 70176 1oaoC 729 8.12e+00 e.26.1.3 86746 1mzhA 225 8.91e+00 c.1.10.1 79698 1qhdA 398 9.22e+00 1qhdA a.115.1.2,b.19.1.1 63324,63325 2au5A 139 9.27e+00 1no7A 604 9.68e+00 e.48.1.1 92016 1vr5A 547 9.75e+00 1zx5A 300 9.82e+00 1f60B 94 9.88e+00 1b64 d.58.12.1 39307 1gx1A 160 1.06e+01 d.79.5.1 70675 1nox 205 1.07e+01 1nox d.90.1.1 40242 2bo9B 222 1.12e+01 1f7cA 231 1.15e+01 1f7cA a.116.1.1 19107 1m7bA 184 1.19e+01 c.37.1.8 74572 1rreA 200 1.24e+01 d.14.1.10 97791 1ynfA 458 1.25e+01 1tc1A 220 1.28e+01 1tc1A c.61.1.1 34083 2b3yA 888 1.29e+01 2fbaA 492 1.31e+01 1ayx 492 1.37e+01 1ayx a.102.1.1 18825 1vhnA 318 1.43e+01 c.1.4.1 100693 1v8bA 479 1.46e+01 1hh5A 68 1.46e+01 1new a.138.1.1 61041 1qnxA 209 1.53e+01 1qnxA d.111.1.1 40914 1vljA 407 1.56e+01 e.22.1.2 108832 1vplA 256 1.59e+01 1ryoA 327 1.60e+01 c.94.1.2 98108 1n0qA 93 1.69e+01 k.37.1.1 79754 1vk8A 106 1.76e+01 d.58.48.1 108636 1d8hA 311 1.79e+01 1d8iA d.63.1.1 39544 1avsA 90 1.84e+01 1cll a.39.1.5 17226 1e4fT 419 1.87e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 2cw8A 537 1.87e+01 1oc0B 51 1.98e+01 g.64.1.1 86791 2fbhA 146 2.06e+01 1womA 271 2.08e+01 2a61A 145 2.12e+01 2bl0B 145 2.16e+01 1u9cA 224 2.16e+01 1qvcA 145 2.23e+01 3ullA b.40.4.3 25284 1mh1 186 2.27e+01 1eesA c.37.1.8 32002 1lhpA 312 2.27e+01 c.72.1.5 77960 2ayuA 417 2.27e+01 1ye8A 178 2.32e+01 1i36A 264 2.42e+01 a.100.1.8,c.2.1.6 71108,71109 1lqtA 456 2.42e+01 c.3.1.1,c.4.1.1 74198,74199 1mp9A 198 2.44e+01 d.129.1.1,d.129.1.1 91385,91386 1kyqA 274 2.55e+01 c.2.1.11,e.37.1.1 73281,73282 1gq8A 319 2.58e+01 b.80.1.5 70350 1aqcA 172 2.59e+01 1x11A b.55.1.2 26983 1ez0A 510 2.60e+01 1eyyA c.82.1.1 35385 1r5tA 142 2.66e+01 c.97.1.1 104812 1fxoA 293 2.67e+01 1g0rA c.68.1.6 34524 1u6eA 335 2.68e+01 1j5sA 463 2.89e+01 c.1.9.8 71580 1r45A 204 2.93e+01 1rijA 25 2.98e+01 k.32.1.1 104951 1g8aA 227 2.99e+01 c.66.1.3 90506 2erxA 172 3.01e+01 1wvfA 520 3.04e+01 1ej8A 140 3.10e+01 1qupA b.1.8.1 22300 1kmvA 186 3.12e+01 c.71.1.1 72757 2bfdB 345 3.20e+01 1y8oB 128 3.30e+01 2cy2A 174 3.32e+01 1gpr 162 3.33e+01 1gpr b.84.3.1 28267 1o7iA 119 3.36e+01 b.40.4.3 86642 1mo0A 275 3.43e+01 c.1.1.1 79329 1n6aA 259 3.53e+01 b.76.2.1,b.85.7.1 80121,80122 1qo0D 196 3.57e+01 1qo0D c.23.1.3 31125 1d2zB 153 3.57e+01 1d2zB a.77.1.2 18439 1d1gA 168 3.57e+01 1d1gA c.71.1.1 34889 1w7jB 151 3.58e+01 2f69A 261 3.60e+01 2fhwA 24 3.62e+01 1x7yB 342 3.62e+01 1vrmA 325 3.70e+01 1ejdA 419 3.70e+01 1uae d.68.2.2 39576 1tg7A 971 3.72e+01 1hjsA 332 3.86e+01 c.1.8.3 83492 2ftrA 108 3.88e+01 1xteA 154 3.91e+01 1cdzA 96 3.95e+01 1cdzA c.15.1.1 30925 2c5aA 379 4.06e+01 1q2hA 69 4.08e+01 a.34.4.1 104498 2fgtA 417 4.14e+01 3znf 30 4.17e+01 g.37.1.1 45049 2c3mA 1231 4.20e+01 2aq6A 147 4.26e+01 1i88A 389 4.31e+01 c.95.1.2,c.95.1.2 66070,66071 2cw6A 298 4.33e+01 1ddwA 120 4.37e+01 1evhA b.55.1.4 27001 1uc2A 481 4.42e+01 d.261.1.1 99161 1ru3A 732 4.46e+01 e.26.1.3 97835 1vpdA 299 4.55e+01 1h1yA 228 4.61e+01 c.1.2.2 76506 2fsxA 148 4.67e+01 1t17A 148 4.68e+01 1w9aA 147 4.75e+01 1m7gA 211 4.94e+01 c.37.1.4 78724 1y81A 138 5.04e+01 1eluA 390 5.05e+01 1elqA c.67.1.3 34434 1pxvA 183 5.16e+01 d.3.1.1 95301 2bjrA 368 5.20e+01 2bkyA 97 5.30e+01 1xesA 413 5.31e+01 2d00A 109 5.31e+01 1w0uA 55 5.37e+01 1y51A 88 5.42e+01 1x3lA 440 5.44e+01 1w6uA 302 5.46e+01 1q77A 138 5.47e+01 c.26.2.4 96023 1nriA 306 5.49e+01 c.80.1.3 86123 1x54A 434 5.56e+01 1x58A 62 5.63e+01 1z15A 344 5.71e+01 1aqzA 149 5.72e+01 1aqzA d.1.1.3 36238 1u6rA 380 5.75e+01 1cznA 169 5.76e+01 1rcf c.23.5.1 31181 1m6dA 214 5.80e+01 d.3.1.1 84849 1hkhA 279 5.80e+01 c.69.1.12 90628 1yqtA 538 5.82e+01 1guzA 310 5.92e+01 c.2.1.5,d.162.1.1 65586,65587 1xvaA 292 5.97e+01 1xvaA c.66.1.5 34183 2fflA 756 6.06e+01 1pzqA 60 6.06e+01 a.34.3.1 95466 1eqfA 280 6.10e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1pmy 123 6.23e+01 1bqk b.6.1.1 22888 1hqsA 423 6.39e+01 1iso c.77.1.1 61154 1zin 217 6.41e+01 1zin c.37.1.1,g.41.2.1 31915,45178 5pal 109 6.47e+01 1a75A a.39.1.4 17215 1zj6A 187 6.54e+01 1oxdA 227 6.54e+01 d.22.1.1 93687 2etgA 296 6.54e+01 1y4hA 188 6.55e+01 1as4B 37 6.59e+01 1as4B 1b79A 119 6.63e+01 1b79A a.81.1.1 18451 1usgA 346 6.69e+01 c.93.1.1 99864 2gmfA 127 6.71e+01 2gmfA a.26.1.2 16849 3lzt 129 6.77e+01 3lzt d.2.1.2 36245 1r5lA 262 6.78e+01 a.5.3.1,c.13.1.1 97099,97100 1b77A 228 6.81e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1neeA 138 6.83e+01 d.241.1.1,g.59.1.1 91841,91842 1ytaA 180 6.84e+01 2atrA 138 6.84e+01 1a8y 367 6.85e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1pmmA 466 6.87e+01 c.67.1.6 94901 2cxxA 190 6.92e+01 1j0sA 157 7.00e+01 b.42.1.2 90747 1nf3A 195 7.10e+01 c.37.1.8 85594 1ja1A 622 7.12e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1e1oA 504 7.12e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 2fsjA 346 7.22e+01 2cfeA 162 7.26e+01 2c4nA 250 7.31e+01 1mkmA 249 7.35e+01 a.4.5.33,d.110.2.2 79242,79243 1tf1A 198 7.36e+01 d.110.2.2 106826 2a90A 240 7.37e+01 1jbkA 195 7.37e+01 c.37.1.20 71631 1xb2B 291 7.41e+01 1h7eA 245 7.56e+01 c.68.1.13 60717 3htsB 102 7.63e+01 2hts a.4.5.22 16175 1u7pA 164 7.63e+01 1kl1A 419 7.64e+01 c.67.1.4 72663 1lnwA 147 7.67e+01 a.4.5.28 78104 1ra0A 430 7.71e+01 1ve2A 235 7.87e+01 1wmhA 89 7.92e+01 1m32A 366 7.94e+01 c.67.1.3 78508 1qgoA 264 7.98e+01 1qgoA c.92.1.2 35596 1ywmA 200 8.03e+01 1xfjA 261 8.06e+01 d.194.1.2 109585 1rzhL 281 8.08e+01 f.26.1.1 98164 1vraB 215 8.15e+01 2exnA 136 8.16e+01 1kicA 339 8.24e+01 c.70.1.1 72510 1ehs 48 8.34e+01 1ehs g.2.1.1 43998 1z5zA 271 8.36e+01 1i2mA 216 8.40e+01 1byuA c.37.1.8 61568 1jb9A 316 8.44e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1xofB 22 8.44e+01 1wmdA 434 8.48e+01 b.18.1.20,c.41.1.1 109408,109409 1y7rA 133 8.49e+01 1zkeA 83 8.56e+01 2cwkA 160 8.58e+01 1nhkL 144 8.58e+01 1npk d.58.6.1 39142 1yyaA 250 8.61e+01 1xeaA 323 8.63e+01 c.2.1.3,d.81.1.5 109572,109573 1k4mA 213 8.75e+01 c.26.1.3 77258 1q0qA 406 8.90e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1rhcA 330 8.91e+01 c.1.16.3 97468 2esrA 177 8.91e+01 1z0wA 207 8.96e+01