# List of top-scoring protein chains for t06-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zj6A 187 6.58e-01 1aqcA 172 8.85e-01 1x11A b.55.1.2 26983 1kmqA 184 9.20e-01 c.37.1.8 84412 1ye8A 178 1.02e+00 1se0A 116 1.10e+00 g.52.1.1 98814 1vhnA 318 2.34e+00 c.1.4.1 100693 1cznA 169 2.36e+00 1rcf c.23.5.1 31181 1zx5A 300 2.77e+00 2bo9B 222 2.79e+00 1v1aA 309 2.91e+00 c.72.1.1 100249 1tqyB 415 3.02e+00 c.95.1.1,c.95.1.1 107247,107248 1qhdA 398 3.72e+00 1qhdA a.115.1.2,b.19.1.1 63324,63325 1bn8A 420 3.75e+00 1pcl b.80.1.1 28022 2fbhA 146 4.13e+00 1ymkA 175 4.14e+00 1cdzA 96 4.43e+00 1cdzA c.15.1.1 30925 1oaoC 729 4.60e+00 e.26.1.3 86746 1tc1A 220 5.07e+00 1tc1A c.61.1.1 34083 2a2kA 175 5.77e+00 1vljA 407 6.34e+00 e.22.1.2 108832 1xb2B 291 6.39e+00 1vdnA 162 6.43e+00 1vk8A 106 6.74e+00 d.58.48.1 108636 1x0pA 143 6.75e+00 1ywmA 200 6.79e+00 1mp9A 198 6.96e+00 d.129.1.1,d.129.1.1 91385,91386 1qvcA 145 7.08e+00 3ullA b.40.4.3 25284 1y51A 88 8.05e+00 1lhpA 312 8.46e+00 c.72.1.5 77960 1r31A 428 8.52e+00 d.58.20.1,d.179.1.1 96897,96898 1cvrA 435 8.64e+00 1cvrA b.1.18.12,c.17.1.2 21949,31006 2cw8A 537 9.33e+00 1qnxA 209 9.61e+00 1qnxA d.111.1.1 40914 1f60B 94 9.81e+00 1b64 d.58.12.1 39307 1f7cA 231 9.90e+00 1f7cA a.116.1.1 19107 1ja1A 622 1.00e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 451c 82 1.01e+01 451c a.3.1.1 15904 1iseA 185 1.06e+01 d.67.3.1 90691 1no7A 604 1.07e+01 e.48.1.1 92016 1bvyF 191 1.16e+01 1bvyF c.23.5.1 31207 1xtoA 311 1.20e+01 1vplA 256 1.20e+01 1guzA 310 1.21e+01 c.2.1.5,d.162.1.1 65586,65587 2d00A 109 1.22e+01 1oboA 169 1.23e+01 c.23.5.1 86776 1nriA 306 1.24e+01 c.80.1.3 86123 1ej8A 140 1.27e+01 1qupA b.1.8.1 22300 2atzA 180 1.28e+01 1v5rA 97 1.30e+01 1i0lA 221 1.35e+01 c.61.1.1 71096 1nox 205 1.46e+01 1nox d.90.1.1 40242 1eexA 554 1.48e+01 1dioA c.1.19.3 29650 1ynfA 458 1.58e+01 1hkhA 279 1.61e+01 c.69.1.12 90628 1r45A 204 1.65e+01 1rreA 200 1.71e+01 d.14.1.10 97791 1gsa 316 1.73e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1y81A 138 1.74e+01 1pzqA 60 1.78e+01 a.34.3.1 95466 2g2cA 167 1.78e+01 2gmfA 127 1.82e+01 2gmfA a.26.1.2 16849 1womA 271 1.87e+01 2ftrA 108 1.89e+01 1j0sA 157 1.90e+01 b.42.1.2 90747 1vr5A 547 1.96e+01 1hxrA 115 1.98e+01 1fwqA b.88.1.1 28392 1k8wA 327 1.99e+01 b.122.1.1,d.265.1.2 83094,90388 1xeaA 323 2.07e+01 c.2.1.3,d.81.1.5 109572,109573 1i36A 264 2.12e+01 a.100.1.8,c.2.1.6 71108,71109 1j5sA 463 2.18e+01 c.1.9.8 71580 2bjvA 265 2.22e+01 1rzhL 281 2.22e+01 f.26.1.1 98164 1alu 186 2.36e+01 1alu a.26.1.1 16826 1io2A 213 2.37e+01 1ekeA c.55.3.1 62612 7odcA 424 2.40e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1xxlA 239 2.46e+01 2gatA 66 2.47e+01 1gatA g.39.1.1 45102 2f3yA 148 2.47e+01 1eayC 74 2.51e+01 1eayC d.58.24.1 39386 1a8y 367 2.52e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2b3yA 888 2.53e+01 2bfdB 345 2.55e+01 1wvfA 520 2.66e+01 1m6dA 214 2.66e+01 d.3.1.1 84849 2fsjA 346 2.66e+01 1m7bA 184 2.67e+01 c.37.1.8 74572 1nrzA 164 2.70e+01 c.38.1.1 86131 1fzqA 181 2.71e+01 1hurA c.37.1.8 32060 1afwA 393 2.75e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 2a5jA 191 2.75e+01 1qkkA 155 2.78e+01 1dbwA c.23.1.1 31104 1ez0A 510 2.80e+01 1eyyA c.82.1.1 35385 1r5tA 142 2.83e+01 c.97.1.1 104812 1h4vB 421 2.85e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1e1oA 504 2.88e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 2au5A 139 2.89e+01 1x7yB 342 2.92e+01 3znf 30 2.98e+01 g.37.1.1 45049 2fhwA 24 2.98e+01 2cy2A 174 3.05e+01 1mzhA 225 3.08e+01 c.1.10.1 79698 2fliA 220 3.11e+01 1ru3A 732 3.15e+01 e.26.1.3 97835 1eejA 216 3.16e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1oc0B 51 3.19e+01 g.64.1.1 86791 1rqbA 539 3.21e+01 a.5.7.2,c.1.10.5 105057,105058 1ywfA 296 3.21e+01 1fnnA 389 3.22e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1dykA 394 3.26e+01 1dykA b.29.1.4,b.29.1.4 24223,24224 1gpr 162 3.32e+01 1gpr b.84.3.1 28267 1qo0D 196 3.41e+01 1qo0D c.23.1.3 31125 1tv8A 340 3.42e+01 c.1.28.3 107352 1ehs 48 3.44e+01 1ehs g.2.1.1 43998 1czaN 917 3.44e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1gx1A 160 3.45e+01 d.79.5.1 70675 1e8cA 498 3.47e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1ryoA 327 3.52e+01 c.94.1.2 98108 1z0wA 207 3.57e+01 1lqtA 456 3.63e+01 c.3.1.1,c.4.1.1 74198,74199 1i88A 389 3.63e+01 c.95.1.2,c.95.1.2 66070,66071 1kicA 339 3.66e+01 c.70.1.1 72510 1un7A 400 3.66e+01 b.92.1.5,c.1.9.10 99657,99658 1kyqA 274 3.67e+01 c.2.1.11,e.37.1.1 73281,73282 1bueA 265 3.70e+01 1btl e.3.1.1 42727 1k8kA 418 3.77e+01 c.55.1.1,c.55.1.1 68305,68306 2av5A 120 3.79e+01 1fp2A 352 3.80e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1v6tA 255 3.85e+01 1yrtA 364 3.85e+01 1mugA 168 3.97e+01 1mugA c.18.1.2 31030 1y8oB 128 4.02e+01 1mvlA 209 4.24e+01 c.34.1.1 85146 1tedA 393 4.34e+01 c.95.1.2 106807 1kmvA 186 4.45e+01 c.71.1.1 72757 1zin 217 4.46e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1v71A 323 4.48e+01 1qfjA 232 4.48e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1d2zB 153 4.51e+01 1d2zB a.77.1.2 18439 1mh1 186 4.52e+01 1eesA c.37.1.8 32002 1x3lA 440 4.55e+01 1wwzA 159 4.55e+01 1pvvA 315 4.55e+01 c.78.1.1,c.78.1.1 95190,95191 1eluA 390 4.58e+01 1elqA c.67.1.3 34434 1n0qA 93 4.61e+01 k.37.1.1 79754 1c3mA 147 4.66e+01 1jotA b.77.3.1 27983 1oh4A 179 4.66e+01 b.18.1.18 92978 1qgoA 264 4.70e+01 1qgoA c.92.1.2 35596 2b8nA 429 4.71e+01 2a61A 145 4.73e+01 1zavA 180 4.77e+01 1xg5A 279 4.78e+01 1yqtA 538 4.80e+01 1ogqA 313 4.90e+01 c.10.2.8 86996 1odkA 235 5.01e+01 c.56.2.1 86863 1w6uA 302 5.09e+01 1nf3A 195 5.11e+01 c.37.1.8 85594 1bbhA 131 5.13e+01 1bbhA a.24.3.2 16546 2fflA 756 5.13e+01 1o59A 355 5.17e+01 b.18.1.22,b.18.1.22 92495,92496 1exrA 148 5.22e+01 1cll a.39.1.5 17299 1kaeA 434 5.24e+01 c.82.1.2 72247 1tw7A 99 5.25e+01 1gk8A 475 5.39e+01 c.1.14.1,d.58.9.1 65234,65235 2bkyA 97 5.42e+01 1wmdA 434 5.48e+01 b.18.1.20,c.41.1.1 109408,109409 1kshA 186 5.49e+01 c.37.1.8 72914 1nh1A 330 5.52e+01 e.45.1.1 91871 2bmoA 447 5.53e+01 1vj7A 393 5.66e+01 a.211.1.1,d.218.1.8 100801,100802 1z8sA 146 5.69e+01 1qntA 176 5.78e+01 1sfe a.4.2.1,c.55.7.1 16074,33749 1mtpA 323 5.81e+01 e.1.1.1 85107 1n83A 270 5.82e+01 a.123.1.1 80276 1jg5A 83 5.88e+01 d.205.1.1 66666 1zcbA 362 5.89e+01 1tqxA 227 5.89e+01 1xfjA 261 6.01e+01 d.194.1.2 109585 1ikpA 613 6.07e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1q2hA 69 6.12e+01 a.34.4.1 104498 1hrnA 337 6.12e+01 1smrA b.50.1.2 26869 1x3sA 195 6.19e+01 2aifA 135 6.20e+01 1js8A 394 6.21e+01 a.86.1.1,b.112.1.1 67219,67220 1b79A 119 6.22e+01 1b79A a.81.1.1 18451 1tyv 542 6.23e+01 1tyv b.80.1.6 28038 1y7rA 133 6.34e+01 1tbaA 67 6.36e+01 1tbaA a.15.1.1 16380 1gpuA 680 6.39e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1b9oA 123 6.41e+01 3lzt d.2.1.2 36597 2gh1A 301 6.48e+01 1hufA 140 6.50e+01 1hufA d.195.1.1 61272 1fjjA 159 6.53e+01 1fjjA b.17.1.2 59852 1qysA 106 6.55e+01 k.41.1.1 96603 1lc5A 364 6.59e+01 c.67.1.1 73827 1t5rA 284 6.68e+01 f.6.1.1 106465 1vrmA 325 6.71e+01 1dp4A 435 6.71e+01 1dp4A c.93.1.1 35710 1fe0A 68 6.72e+01 1cc8A d.58.17.1 39345 1ydlA 79 6.88e+01 1v4pA 157 6.93e+01 1as4B 37 6.97e+01 1as4B 1obbA 480 7.05e+01 c.2.1.5,d.162.1.2 86760,86761 1yb2A 275 7.07e+01 1vcc 77 7.09e+01 1vcc d.121.1.1 41092 1hw7A 255 7.12e+01 1i7fA d.193.1.1 61297 1kqqA 139 7.19e+01 a.4.3.1 72885 1v8bA 479 7.22e+01 1vpdA 299 7.35e+01 1tyjA 170 7.52e+01 1yakA 263 7.61e+01 2f8aA 208 7.69e+01 1qfoA 119 7.69e+01 1qfoA b.1.1.1 19708 1wmhA 89 7.69e+01 1qlmA 316 7.77e+01 1qlmA d.147.1.1 41765 1obdA 306 7.83e+01 d.143.1.1 86767 2ayuA 417 7.88e+01 1w0mA 226 7.99e+01 c.1.1.1 109027 1y0hA 105 7.99e+01 1ri6A 343 8.00e+01 b.69.11.1 97503 2cfeA 162 8.03e+01 2cxxA 190 8.08e+01 1b4bA 71 8.15e+01 1b4aA d.74.2.1 39718 1agjA 242 8.17e+01 1agjA b.47.1.1 25827 1dxeA 256 8.18e+01 1dxeA c.1.12.5 29310 1wyuA 438 8.20e+01 2cuaA 135 8.22e+01 2cuaA b.6.1.2 23039 1hw1A 239 8.22e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1yqdA 366 8.25e+01 2d83A 363 8.30e+01 1fvpA 231 8.30e+01 1nfp c.1.16.2 29556 1xteA 154 8.30e+01 1usmA 80 8.37e+01 d.74.1.1 99876 1xngA 268 8.43e+01 1owxA 121 8.43e+01 d.58.7.1 87494 2bemA 170 8.48e+01 1rloA 271 8.53e+01 1rro 108 8.55e+01 1a75A a.39.1.4 17195 1nrjB 218 8.67e+01 c.37.1.8 86125 1o08A 221 8.68e+01 c.108.1.6 86525 1tcvA 287 8.68e+01 1yjsA 419 8.70e+01 1v0aA 178 8.76e+01 1xvaA 292 8.79e+01 1xvaA c.66.1.5 34183 1tvxA 75 8.83e+01 1tvxA d.9.1.1 37441 1x8bA 289 8.87e+01 2c5aA 379 8.90e+01 1mkmA 249 8.90e+01 a.4.5.33,d.110.2.2 79242,79243 1y2kA 349 8.97e+01 1tadA 324 8.98e+01 1cipA a.66.1.1,c.37.1.8 18194,32077