# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gtdA 85 1.61e+00 d.284.1.1 76344 1mp9A 198 4.69e+00 d.129.1.1,d.129.1.1 91385,91386 1wvfA 520 4.91e+00 1se0A 116 5.99e+00 g.52.1.1 98814 1vdnA 162 6.62e+00 1zavA 180 6.88e+00 1amuA 563 7.08e+00 1amuA e.23.1.1 43351 1qnxA 209 8.19e+00 1qnxA d.111.1.1 40914 1tx4B 178 9.13e+00 1ctqA c.37.1.8 32045 1tc1A 220 1.04e+01 1tc1A c.61.1.1 34083 1kmqA 184 1.27e+01 c.37.1.8 84412 2cu5A 129 1.28e+01 1g4yR 148 1.28e+01 1cll a.39.1.5 60252 1mkmA 249 1.46e+01 a.4.5.33,d.110.2.2 79242,79243 1kicA 339 1.54e+01 c.70.1.1 72510 2bk7B 222 1.56e+01 2bo9B 222 1.56e+01 1b1cA 181 1.58e+01 1amoA c.23.5.2 31212 1tqyB 415 1.62e+01 c.95.1.1,c.95.1.1 107247,107248 1yruA 364 1.65e+01 2av5A 120 1.87e+01 1mh1 186 1.88e+01 1eesA c.37.1.8 32002 1b79A 119 2.00e+01 1b79A a.81.1.1 18451 1c25 161 2.00e+01 1c25 c.46.1.1 32698 1vk8A 106 2.04e+01 d.58.48.1 108636 1zip 217 2.22e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1uohA 226 2.25e+01 d.211.1.1 99690 1rzhL 281 2.51e+01 f.26.1.1 98164 1nn7A 105 2.65e+01 d.42.1.2 85894 1zin 217 2.67e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1aisA 182 2.68e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1vljA 407 2.70e+01 e.22.1.2 108832 1ckv 141 2.75e+01 1ckv d.137.1.1 41452 2bmoA 447 2.84e+01 2ftrA 108 2.91e+01 1m7bA 184 3.00e+01 c.37.1.8 74572 2c2hA 192 3.00e+01 1no7A 604 3.08e+01 e.48.1.1 92016 1exrA 148 3.09e+01 1cll a.39.1.5 17299 1zx5A 300 3.11e+01 1qoiA 177 3.17e+01 2cpl b.62.1.1 27490 1jx2B 315 3.19e+01 c.37.1.8 67404 1bvyF 191 3.60e+01 1bvyF c.23.5.1 31207 1rhxA 87 3.67e+01 1cdzA 96 3.75e+01 1cdzA c.15.1.1 30925 1nonA 179 3.78e+01 c.61.1.1 103868 1x0pA 143 3.79e+01 1ymkA 175 3.83e+01 1x3lA 440 3.90e+01 1p3jA 217 4.04e+01 c.37.1.1,g.41.2.1 94022,94023 1y51A 88 4.05e+01 1t6cA 315 4.06e+01 c.55.1.8,c.55.1.8 106558,106559 1j9aA 184 4.26e+01 c.55.3.5 84135 1y9qA 192 4.26e+01 1w6uA 302 4.35e+01 1x7yB 342 4.53e+01 1eqfA 280 4.55e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1olsB 342 4.66e+01 c.36.1.7,c.48.1.2 93332,93333 1v1rB 342 4.70e+01 c.36.1.7,c.48.1.2 108273,108274 1h0xA 100 4.84e+01 d.68.6.1 76451 1x58A 62 4.89e+01 1z9bA 135 4.91e+01 2f3yA 148 4.91e+01 1xb2B 291 5.11e+01 2fbhA 146 5.15e+01 1m6dA 214 5.20e+01 d.3.1.1 84849 1jkmB 361 5.21e+01 1jkmA c.69.1.2 34634 1z0wA 207 5.24e+01 1zj6A 187 5.25e+01 1oy3D 282 5.25e+01 d.211.1.1 87554 1u6rA 380 5.29e+01 1jcfA 344 5.34e+01 c.55.1.1,c.55.1.1 62878,62879 1vrpA 381 5.40e+01 1m7xA 617 5.50e+01 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2cfeA 162 5.58e+01 1qb0A 211 5.80e+01 1c25 c.46.1.1 32699 1o7nA 449 6.00e+01 b.33.1.2,d.129.3.3 81162,81163 1xfxO 149 6.12e+01 1yrtA 364 6.22e+01 1eg9A 449 6.32e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 2b8nA 429 6.37e+01 2a2kA 175 6.38e+01 2cw8A 537 6.39e+01 1xtnA 120 6.53e+01 2bfdB 345 6.63e+01 1nbwA 607 6.73e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1a8y 367 6.75e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1rreA 200 6.91e+01 d.14.1.10 97791 2bkyA 97 6.99e+01 1n2fA 142 7.02e+01 d.227.1.1 79853 1y0hA 105 7.25e+01 1dtwB 342 7.30e+01 1qs0B c.36.1.7,c.48.1.2 31828,33102 1urjA 1136 7.33e+01 1ytlA 174 7.34e+01 1v1aA 309 7.59e+01 c.72.1.1 100249 1avqA 228 7.68e+01 1avqA c.52.1.13 33326 2fsxA 148 7.84e+01 351c 82 7.89e+01 451c a.3.1.1 15905 451c 82 7.89e+01 451c a.3.1.1 15904 2a0jA 149 8.10e+01 1sy7A 715 8.11e+01 1f60B 94 8.16e+01 1b64 d.58.12.1 39307 1yf5L 254 8.20e+01 1le6A 123 8.21e+01 a.133.1.2 73862 1fbnA 230 8.26e+01 1fbnA c.66.1.3 34181 1xznA 179 8.36e+01 1zotA 358 8.40e+01 1xtoA 311 8.45e+01 1nf3A 195 8.46e+01 c.37.1.8 85594 1ru3A 732 8.65e+01 e.26.1.3 97835 1g8sA 230 8.66e+01 c.66.1.3 90507 1y0vH 146 8.85e+01 1dmhA 311 8.90e+01 1dmhA b.3.6.1 22633 1ynfA 458 8.93e+01