# List of top-scoring protein chains for t04-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tx4B 178 9.55e-01 1ctqA c.37.1.8 32045 1kmqA 184 1.40e+00 c.37.1.8 84412 1tqyB 415 2.46e+00 c.95.1.1,c.95.1.1 107247,107248 1vljA 407 4.38e+00 e.22.1.2 108832 1oaoC 729 4.42e+00 e.26.1.3 86746 2fsjA 346 4.50e+00 2bk7B 222 4.73e+00 2bo9B 222 4.73e+00 1fs5A 266 6.72e+00 c.124.1.1 65044 1se0A 116 7.42e+00 g.52.1.1 98814 1l1qA 186 9.32e+00 c.61.1.1 77653 1tc1A 220 1.02e+01 1tc1A c.61.1.1 34083 1ru3A 732 1.17e+01 e.26.1.3 97835 8dfr 189 1.18e+01 1aoeA c.71.1.1 34895 1sxjE 354 1.22e+01 a.80.1.1,c.37.1.20 106089,106090 1zj6A 187 1.27e+01 1qo0D 196 1.30e+01 1qo0D c.23.1.3 31125 2c2hA 192 1.33e+01 1g4yR 148 1.38e+01 1cll a.39.1.5 60252 1i0lA 221 1.64e+01 c.61.1.1 71096 1cdzA 96 1.76e+01 1cdzA c.15.1.1 30925 1b1cA 181 1.76e+01 1amoA c.23.5.2 31212 2av5A 120 1.78e+01 1mh1 186 1.95e+01 1eesA c.37.1.8 32002 1womA 271 2.29e+01 1fa0A 537 2.47e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1qnxA 209 2.48e+01 1qnxA d.111.1.1 40914 1fbnA 230 2.49e+01 1fbnA c.66.1.3 34181 1vj7A 393 2.49e+01 a.211.1.1,d.218.1.8 100801,100802 1g8sA 230 2.50e+01 c.66.1.3 90507 1tadA 324 2.59e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1uohA 226 2.73e+01 d.211.1.1 99690 1x0pA 143 2.79e+01 1x8bA 289 2.90e+01 1udzA 182 2.91e+01 b.51.1.1 99239 2fbhA 146 3.03e+01 1m6dA 214 3.08e+01 d.3.1.1 84849 1oy3D 282 3.21e+01 d.211.1.1 87554 1wk8A 194 3.27e+01 1ytlA 174 3.55e+01 1gtdA 85 3.68e+01 d.284.1.1 76344 2b3yA 888 3.97e+01 1lqtA 456 3.97e+01 c.3.1.1,c.4.1.1 74198,74199 1o0uA 429 4.08e+01 c.118.1.1 80743 2cc0A 195 4.19e+01 1x3lA 440 4.22e+01 1jx2B 315 4.22e+01 c.37.1.8 67404 2f3yA 148 4.24e+01 1kmvA 186 4.24e+01 c.71.1.1 72757 1vrpA 381 4.26e+01 1ryoA 327 4.28e+01 c.94.1.2 98108 2b8nA 429 4.31e+01 1ihp 438 4.45e+01 1ihp c.60.1.2 33993 1vk8A 106 4.46e+01 d.58.48.1 108636 2atxA 194 4.51e+01 1wnhA 225 4.57e+01 1uarA 285 4.59e+01 c.46.1.2,c.46.1.2 107762,107763 1tag 324 4.60e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 1bvyF 191 4.63e+01 1bvyF c.23.5.1 31207 1j0aA 325 4.65e+01 c.79.1.1 83871 1cby 259 4.72e+01 1cby d.103.1.1 40705 1bi5A 389 4.77e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 2cw8A 537 4.80e+01 1zx5A 300 4.81e+01 1n2fA 142 4.89e+01 d.227.1.1 79853 1mp9A 198 5.02e+01 d.129.1.1,d.129.1.1 91385,91386 2g2cA 167 5.03e+01 2bmoA 447 5.32e+01 1a8e 329 5.35e+01 1cb6A c.94.1.2 35888 1c25 161 5.35e+01 1c25 c.46.1.1 32698 1v86A 95 5.52e+01 d.15.1.1 108421 1i88A 389 5.57e+01 c.95.1.2,c.95.1.2 66070,66071 2f1rA 171 5.59e+01 1kicA 339 5.63e+01 c.70.1.1 72510 1uuyA 167 5.69e+01 c.57.1.1 108059 1gx1A 160 5.70e+01 d.79.5.1 70675 1qkkA 155 5.90e+01 1dbwA c.23.1.1 31104 1hkhA 279 5.92e+01 c.69.1.12 90628 2etgA 296 5.92e+01 1vr5A 547 6.04e+01 1fp2A 352 6.37e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1no7A 604 6.39e+01 e.48.1.1 92016 1z0wA 207 6.48e+01 1ye8A 178 6.63e+01 1v71A 323 6.64e+01 1t6cA 315 6.72e+01 c.55.1.8,c.55.1.8 106558,106559 1xfxO 149 6.76e+01 1tu5A 746 6.89e+01 1yqdA 366 6.91e+01 1nrzA 164 7.17e+01 c.38.1.1 86131 2anpA 291 7.36e+01 1ywmA 200 7.42e+01 1c3mA 147 7.45e+01 1jotA b.77.3.1 27983 1mzhA 225 7.49e+01 c.1.10.1 79698 1rzhL 281 7.53e+01 f.26.1.1 98164 1u6rA 380 7.75e+01 1lhpA 312 7.77e+01 c.72.1.5 77960 1t6nA 220 7.87e+01 c.37.1.19 106576 1xfjA 261 7.92e+01 d.194.1.2 109585 1xeaA 323 7.94e+01 c.2.1.3,d.81.1.5 109572,109573 1ml8A 134 8.11e+01 d.227.1.2 85013 1qfjA 232 8.29e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1oaoA 674 8.31e+01 e.26.1.2 86744 1a8y 367 8.48e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2b25A 336 8.64e+01 1aq0A 306 8.79e+01 1aq0A c.1.8.3 28842 1icrA 217 8.93e+01 1vfrA d.90.1.1 62274 1ykiA 217 8.93e+01