# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gtdA 85 2.80e+00 d.284.1.1 76344 2bk7B 222 3.21e+00 2bo9B 222 3.21e+00 1nox 205 9.22e+00 1nox d.90.1.1 40242 1vdnA 162 1.06e+01 1amuA 563 1.30e+01 1amuA e.23.1.1 43351 1vk8A 106 1.31e+01 d.58.48.1 108636 1zj6A 187 1.31e+01 2g2cA 167 1.45e+01 1oaoC 729 1.53e+01 e.26.1.3 86746 1se0A 116 1.54e+01 g.52.1.1 98814 1g4yR 148 1.57e+01 1cll a.39.1.5 60252 1mp9A 198 1.61e+01 d.129.1.1,d.129.1.1 91385,91386 2cu5A 129 1.63e+01 1c25 161 1.74e+01 1c25 c.46.1.1 32698 1jx2B 315 1.79e+01 c.37.1.8 67404 1tqyB 415 1.97e+01 c.95.1.1,c.95.1.1 107247,107248 2b3yA 888 2.08e+01 2ftrA 108 2.33e+01 1aqcA 172 2.39e+01 1x11A b.55.1.2 26983 1j9aA 184 2.44e+01 c.55.3.5 84135 1qnxA 209 2.60e+01 1qnxA d.111.1.1 40914 1wnhA 225 2.64e+01 1j0aA 325 2.86e+01 c.79.1.1 83871 1ye8A 178 2.87e+01 1an9A 340 2.97e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1vljA 407 3.03e+01 e.22.1.2 108832 1cvrA 435 3.22e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1tx4B 178 3.34e+01 1ctqA c.37.1.8 32045 1hkhA 279 3.38e+01 c.69.1.12 90628 1x0pA 143 3.62e+01 1zx5A 300 3.85e+01 1cdzA 96 3.86e+01 1cdzA c.15.1.1 30925 1vbiA 344 3.88e+01 1wvfA 520 3.90e+01 1sfnA 246 3.92e+01 b.82.1.11 105496 1yrtA 364 3.94e+01 1x7yB 342 3.96e+01 2bfdB 345 4.00e+01 1olsB 342 4.01e+01 c.36.1.7,c.48.1.2 93332,93333 1x8bA 289 4.01e+01 1zotA 358 4.06e+01 1v1rB 342 4.17e+01 c.36.1.7,c.48.1.2 108273,108274 2gw6A 123 4.18e+01 2cw8A 537 4.24e+01 1tc1A 220 4.26e+01 1tc1A c.61.1.1 34083 1bvyF 191 4.35e+01 1bvyF c.23.5.1 31207 1sxjE 354 4.37e+01 a.80.1.1,c.37.1.20 106089,106090 1yruA 364 4.46e+01 2av5A 120 4.47e+01 1f60B 94 4.57e+01 1b64 d.58.12.1 39307 1x3lA 440 4.58e+01 1kmqA 184 4.60e+01 c.37.1.8 84412 2fbhA 146 4.83e+01 1m7bA 184 4.88e+01 c.37.1.8 74572 1le6A 123 4.90e+01 a.133.1.2 73862 1kicA 339 4.94e+01 c.70.1.1 72510 2au5A 139 4.94e+01 1uohA 226 5.06e+01 d.211.1.1 99690 1n2fA 142 5.08e+01 d.227.1.1 79853 2f3yA 148 5.11e+01 1fa0A 537 5.16e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1lxjA 104 5.32e+01 d.58.48.1 84736 1dtwB 342 5.48e+01 1qs0B c.36.1.7,c.48.1.2 31828,33102 1qoiA 177 5.57e+01 2cpl b.62.1.1 27490 351c 82 5.77e+01 451c a.3.1.1 15905 451c 82 5.77e+01 451c a.3.1.1 15904 1xb2B 291 5.77e+01 1afwA 393 5.81e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 2gmfA 127 5.82e+01 2gmfA a.26.1.2 16849 1zsyA 357 5.83e+01 1uuyA 167 5.84e+01 c.57.1.1 108059 1aisA 182 5.90e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1wmdA 434 5.90e+01 b.18.1.20,c.41.1.1 109408,109409 1tf1A 198 5.92e+01 d.110.2.2 106826 1uu3A 310 6.03e+01 d.144.1.7 99999 1kmvA 186 6.10e+01 c.71.1.1 72757 1rhxA 87 6.36e+01 1i2kA 269 6.36e+01 e.17.1.1 90661 1no7A 604 6.69e+01 e.48.1.1 92016 2fsjA 346 6.72e+01 1fbnA 230 6.79e+01 1fbnA c.66.1.3 34181 1xfxO 149 6.81e+01 1rzhL 281 7.03e+01 f.26.1.1 98164 1g8sA 230 7.06e+01 c.66.1.3 90507 1shsA 147 7.10e+01 1shsA b.15.1.1 23675 2etgA 296 7.14e+01 1oy3D 282 7.18e+01 d.211.1.1 87554 1rreA 200 7.30e+01 d.14.1.10 97791 1nw2A 105 7.50e+01 c.47.1.1 92215 1mh1 186 7.55e+01 1eesA c.37.1.8 32002 1xteA 154 7.67e+01 1b1cA 181 7.70e+01 1amoA c.23.5.2 31212 1gk8A 475 7.98e+01 c.1.14.1,d.58.9.1 65234,65235 1ve9A 347 8.06e+01 c.4.1.2,d.16.1.3 100571,100572 1xtnA 120 8.10e+01 1ve6A 582 8.20e+01 1aa8A 347 8.26e+01 1an9A 1vraB 215 8.38e+01 1smtA 122 8.44e+01 1smtA a.4.5.5 16109 1ckv 141 8.58e+01 1ckv d.137.1.1 41452 1nxiA 132 8.80e+01 d.58.47.1 86381 1qvcA 145 8.85e+01 3ullA b.40.4.3 25284 1ywmA 200 8.88e+01 2bmoA 447 8.92e+01 1i36A 264 8.96e+01 a.100.1.8,c.2.1.6 71108,71109 1eudB 396 8.98e+01 2scuB c.23.4.1,d.142.1.4 31150,41571