# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vljA 407 4.75e+00 e.22.1.2 108832 1se0A 116 5.87e+00 g.52.1.1 98814 1mp9A 198 7.21e+00 d.129.1.1,d.129.1.1 91385,91386 2bk7B 222 8.72e+00 2bo9B 222 8.72e+00 1tx4B 178 8.90e+00 1ctqA c.37.1.8 32045 1zj6A 187 9.14e+00 1gtdA 85 9.66e+00 d.284.1.1 76344 1tqyB 415 9.89e+00 c.95.1.1,c.95.1.1 107247,107248 1uohA 226 1.01e+01 d.211.1.1 99690 2ftrA 108 1.03e+01 2fbhA 146 1.15e+01 1kmqA 184 1.20e+01 c.37.1.8 84412 1m7bA 184 1.29e+01 c.37.1.8 74572 1vk8A 106 1.29e+01 d.58.48.1 108636 1vdnA 162 1.35e+01 1c25 161 1.38e+01 1c25 c.46.1.1 32698 1cdzA 96 1.56e+01 1cdzA c.15.1.1 30925 1ywmA 200 1.67e+01 1g4yR 148 1.71e+01 1cll a.39.1.5 60252 1aisA 182 1.90e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1qnxA 209 1.92e+01 1qnxA d.111.1.1 40914 2b3yA 888 2.06e+01 1wvfA 520 2.13e+01 2a2kA 175 2.54e+01 1x3lA 440 2.56e+01 1oy3D 282 2.59e+01 d.211.1.1 87554 1zx5A 300 2.75e+01 1v1rB 342 2.77e+01 c.36.1.7,c.48.1.2 108273,108274 1olsB 342 2.84e+01 c.36.1.7,c.48.1.2 93332,93333 1vhnA 318 2.86e+01 c.1.4.1 100693 1bvyF 191 2.94e+01 1bvyF c.23.5.1 31207 1x7yB 342 2.98e+01 2bfdB 345 3.00e+01 1jx2B 315 3.20e+01 c.37.1.8 67404 1cznA 169 3.30e+01 1rcf c.23.5.1 31181 1mh1 186 3.49e+01 1eesA c.37.1.8 32002 2cw8A 537 3.56e+01 2c2hA 192 3.56e+01 1l1qA 186 3.62e+01 c.61.1.1 77653 1kicA 339 3.66e+01 c.70.1.1 72510 1qoiA 177 3.78e+01 2cpl b.62.1.1 27490 1oaoC 729 3.93e+01 e.26.1.3 86746 2gmfA 127 3.96e+01 2gmfA a.26.1.2 16849 1aqcA 172 4.14e+01 1x11A b.55.1.2 26983 1kmvA 186 4.14e+01 c.71.1.1 72757 2av5A 120 4.21e+01 1ye8A 178 4.24e+01 1wnhA 225 4.28e+01 1vrpA 381 4.36e+01 1fbnA 230 4.37e+01 1fbnA c.66.1.3 34181 2g2cA 167 4.44e+01 1le6A 123 4.48e+01 a.133.1.2 73862 1dtwB 342 4.49e+01 1qs0B c.36.1.7,c.48.1.2 31828,33102 1g8sA 230 4.54e+01 c.66.1.3 90507 1z9bA 135 4.57e+01 1y8oB 128 4.73e+01 2d1eA 248 4.97e+01 1x8bA 289 4.99e+01 1oj7A 408 5.03e+01 e.22.1.2 103971 1zavA 180 5.08e+01 1ckv 141 5.33e+01 1ckv d.137.1.1 41452 1m7xA 617 5.33e+01 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2c5aA 379 5.36e+01 1sxjE 354 5.47e+01 a.80.1.1,c.37.1.20 106089,106090 351c 82 5.53e+01 451c a.3.1.1 15905 451c 82 5.53e+01 451c a.3.1.1 15904 1jkmB 361 5.56e+01 1jkmA c.69.1.2 34634 1ru3A 732 5.66e+01 e.26.1.3 97835 2gw6A 123 5.72e+01 1m7sA 484 5.76e+01 e.5.1.1 74574 1qhdA 398 5.77e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1y0hA 105 5.79e+01 1y51A 88 5.80e+01 1no7A 604 5.84e+01 e.48.1.1 92016 1dqpA 230 5.95e+01 1dqnA c.61.1.1 34069 1qo0D 196 6.31e+01 1qo0D c.23.1.3 31125 1tc1A 220 6.33e+01 1tc1A c.61.1.1 34083 1ef1A 294 6.36e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1yyvA 131 6.46e+01 1dqnA 230 6.57e+01 1dqnA c.61.1.1 34067 1a8y 367 6.58e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1zin 217 6.61e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1adjA 421 6.65e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 2ex4A 241 6.67e+01 1n0qA 93 6.76e+01 k.37.1.1 79754 2a0jA 149 6.76e+01 1nn7A 105 6.79e+01 d.42.1.2 85894 1xfjA 261 6.84e+01 d.194.1.2 109585 1tu5A 746 6.85e+01 2bmoA 447 6.95e+01 1n2fA 142 6.97e+01 d.227.1.1 79853 1ymkA 175 7.04e+01 1h7eA 245 7.11e+01 c.68.1.13 60717 1zip 217 7.24e+01 1zin c.37.1.1,g.41.2.1 31916,45179 2cu5A 129 7.29e+01 1bi5A 389 7.39e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1b1cA 181 7.41e+01 1amoA c.23.5.2 31212 2cc0A 195 7.42e+01 1usmA 80 7.43e+01 d.74.1.1 99876 1nonA 179 7.53e+01 c.61.1.1 103868 1lqtA 456 7.55e+01 c.3.1.1,c.4.1.1 74198,74199 1nf3A 195 7.56e+01 c.37.1.8 85594 1qfjA 232 7.63e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 2f1rA 171 7.73e+01 1nw2A 105 7.78e+01 c.47.1.1 92215 1tf1A 198 7.82e+01 d.110.2.2 106826 2fsjA 346 7.88e+01 1em8A 147 7.89e+01 c.128.1.1 90457 1ytlA 174 7.90e+01 1x0pA 143 8.08e+01 1iwmA 186 8.11e+01 b.125.1.2 83758 1wmdA 434 8.23e+01 b.18.1.20,c.41.1.1 109408,109409 1b79A 119 8.40e+01 1b79A a.81.1.1 18451 1qy6A 274 8.46e+01 b.47.1.1 96574 2bcgY 206 8.64e+01 1v8aA 265 8.64e+01 c.72.1.2 100494 1nbwA 607 8.72e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2d4pA 141 8.77e+01 1alu 186 8.85e+01 1alu a.26.1.1 16826 2pia 321 8.87e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1avqA 228 8.96e+01 1avqA c.52.1.13 33326