# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sfnA 246 8.94e-01 b.82.1.11 105496 1kmvA 186 1.31e+00 c.71.1.1 72757 2b3yA 888 1.54e+00 1b1cA 181 4.24e+00 1amoA c.23.5.2 31212 1ywmA 200 4.55e+00 1mhdA 132 6.47e+00 1mhdA d.164.1.1 42175 2a72A 146 6.56e+00 2gw6A 123 6.94e+00 2ayuA 417 7.12e+00 1aqcA 172 7.19e+00 1x11A b.55.1.2 26983 351c 82 7.26e+00 451c a.3.1.1 15905 2cqeA 98 7.43e+00 1ddwA 120 7.43e+00 1evhA b.55.1.4 27001 451c 82 7.55e+00 451c a.3.1.1 15904 1ekeA 230 8.17e+00 1ekeA c.55.3.1 33572 2au5A 139 8.65e+00 1nox 205 9.22e+00 1nox d.90.1.1 40242 1fna 93 9.56e+00 1fnf b.1.2.1 21971 1ynfA 458 9.82e+00 2cy2A 174 1.02e+01 1eexA 554 1.09e+01 1dioA c.1.19.3 29650 1se0A 116 1.13e+01 g.52.1.1 98814 1ozjA 144 1.26e+01 d.164.1.1 93846 2ab5A 269 1.43e+01 2av9A 147 1.47e+01 1h7eA 245 1.48e+01 c.68.1.13 60717 1wab 232 1.50e+01 1wab c.23.10.3 31341 1kmqA 184 1.51e+01 c.37.1.8 84412 1xnpA 202 1.52e+01 2bidA 197 1.53e+01 2bidA f.1.4.1 43398 1oejA 193 1.61e+01 b.60.1.4 92798 2awiA 317 1.77e+01 2fa8A 105 2.02e+01 1iznB 277 2.23e+01 e.43.1.2 83848 1es9A 232 2.25e+01 1wab c.23.10.3 31340 2fmlA 273 2.32e+01 1txlA 215 2.32e+01 b.60.1.4 107429 1zj6A 187 2.34e+01 1ezjA 115 2.36e+01 1ezjA h.1.14.1 45638 1lmiA 131 2.39e+01 b.1.19.1 78098 1c25 161 2.40e+01 1c25 c.46.1.1 32698 1g4yR 148 2.43e+01 1cll a.39.1.5 60252 1m48A 133 2.49e+01 a.26.1.2 74443 2f3yA 148 2.61e+01 1tx4B 178 2.85e+01 1ctqA c.37.1.8 32045 1eqfA 280 2.93e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1ako 268 2.96e+01 1ako d.151.1.1 41779 1q2hA 69 3.04e+01 a.34.4.1 104498 1s4kA 120 3.12e+01 a.35.1.6 105254 1o6zA 303 3.18e+01 c.2.1.5,d.162.1.1 81107,81108 1jv1A 505 3.25e+01 c.68.1.5 71892 1hn6A 110 3.41e+01 g.61.1.1 76721 1shwB 181 3.44e+01 b.18.1.4 105563 1xfxO 149 3.56e+01 1oc0B 51 3.61e+01 g.64.1.1 86791 1zkdA 387 3.67e+01 1a02F 56 3.78e+01 1a02F h.1.3.1 45534 1feuA 206 3.85e+01 1feuA b.53.1.1 59801 8dfr 189 3.98e+01 1aoeA c.71.1.1 34895 1a64A 97 4.15e+01 1cdcA b.1.1.1 19750 1q4uA 151 4.18e+01 d.38.1.5 95828 2ch7A 309 4.21e+01 1kqqA 139 4.25e+01 a.4.3.1 72885 1xouA 192 4.34e+01 2cuaA 135 4.65e+01 2cuaA b.6.1.2 23039 1i2kA 269 4.69e+01 e.17.1.1 90661 1v2xA 194 4.73e+01 c.116.1.1 100274 2bemA 170 4.81e+01 1tqyB 415 4.92e+01 c.95.1.1,c.95.1.1 107247,107248 1knzA 164 4.93e+01 e.34.1.1 68709 1fqjC 42 4.93e+01 1fqjC j.51.1.1 46332 1zklA 353 4.97e+01 1y4hA 188 5.01e+01 1ykiA 217 5.05e+01 1f7cA 231 5.05e+01 1f7cA a.116.1.1 19107 1p65A 73 5.32e+01 d.254.1.1 94156 1oj5A 132 5.37e+01 d.110.3.8 93087 1uovA 159 5.58e+01 b.7.1.2 107974 1lvfA 110 5.58e+01 a.47.2.1 74280 1uzxA 169 5.67e+01 d.20.1.2 100238 1ri7A 171 5.68e+01 a.4.5.32,d.58.4.2 97504,97505 1pxvA 183 5.70e+01 d.3.1.1 95301 1icrA 217 5.79e+01 1vfrA d.90.1.1 62274 1at0 145 5.80e+01 1at0 b.86.1.1 28374 1no7A 604 5.84e+01 e.48.1.1 92016 1sx5A 244 5.91e+01 c.52.1.2 99023 2f8aA 208 6.01e+01 1rhxA 87 6.11e+01 1xxqA 161 6.29e+01 1r4yA 136 6.35e+01 d.1.1.3 97056 1vi1A 345 6.37e+01 c.77.1.4 100724 1rzhL 281 6.44e+01 f.26.1.1 98164 2b33A 140 6.44e+01 1vrbA 342 6.51e+01 1e17A 150 6.57e+01 2hfh a.4.5.14 16143 1lxjA 104 6.59e+01 d.58.48.1 84736 1s9kD 53 6.64e+01 1vk5A 157 6.67e+01 a.220.1.1 108635 1jr8A 117 6.72e+01 a.24.15.1 67115 2bj0A 203 6.74e+01 1b9oA 123 6.75e+01 3lzt d.2.1.2 36597 2a46A 238 6.86e+01 1exrA 148 6.90e+01 1cll a.39.1.5 17299 1grx 85 6.96e+01 1kte c.47.1.1 32766 1whsA 255 7.07e+01 1ivyA c.69.1.5 34649 2bh1A 250 7.14e+01 1or7A 194 7.14e+01 a.4.13.2,a.177.1.1 87332,87333 2biqA 219 7.15e+01 1vd2A 89 7.28e+01 d.15.2.2 108517 1uowA 159 7.39e+01 b.7.1.2 107975 1rvaA 244 7.46e+01 1rvaA c.52.1.2 33240 1ty4C 57 7.47e+01 2fbhA 146 7.57e+01 1y0vH 146 7.58e+01 2aujD 309 7.69e+01 1azwA 313 7.76e+01 1qtrA c.69.1.7 34658 1k8wA 327 7.96e+01 b.122.1.1,d.265.1.2 83094,90388 1j9aA 184 7.97e+01 c.55.3.5 84135 1d2zB 153 7.99e+01 1d2zB a.77.1.2 18439 1tjxA 159 7.99e+01 1foeA 377 8.01e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1mb3A 124 8.02e+01 c.23.1.1 78907 1gouA 116 8.08e+01 d.1.1.2 65429 2occC 261 8.08e+01 1ocrC f.25.1.1 43520 1kgyA 181 8.28e+01 b.18.1.4 72449 1js3A 486 8.31e+01 c.67.1.6 67215 1whtA 256 8.40e+01 1ivyA c.69.1.5 34646 1hxrA 115 8.42e+01 1fwqA b.88.1.1 28392 1cdcA 99 8.42e+01 1cdcA b.1.1.1 19746 1vkrA 125 8.55e+01 c.44.2.1 108689 1eq7A 56 8.61e+01 1eq7A h.1.16.1 45655 1d7mA 101 8.66e+01 1d7mA h.1.10.1 45628 1tc1A 220 8.77e+01 1tc1A c.61.1.1 34083 1qvcA 145 8.87e+01 3ullA b.40.4.3 25284 1jqlB 140 8.91e+01 c.37.1.20 63234 1ciy 590 8.99e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392