/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0317.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0317.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0317/ -e s/START_COL/1/ \ -e s/REAL_PDB/2hcmA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174608519 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.80312 sec, elapsed time= 5.83457 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.87811 sec, elapsed time= 5.9245 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0317 numbered 1 through 163 Created new target T0317 from T0317.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2hcmA expands to /projects/compbio/data/pdb/2hcm.pdb.gz 2hcmA:Skipped atom 315, because occupancy 5.0000000e-01 <= existing 0.500 in 2hcmA Skipped atom 319, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 321, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 323, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 325, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 327, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 329, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 331, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 530, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 534, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 536, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 538, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 665, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 669, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 671, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 944, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 948, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 950, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 952, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 954, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 956, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1122, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1126, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1128, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1130, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1132, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1134, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1137, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1141, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1143, because occupancy 0.500 <= existing 0.500 in 2hcmA Skipped atom 1145, because occupancy 0.500 <= existing 0.500 in 2hcmA Read 159 residues and 1193 atoms. # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.08377 sec, elapsed time= 8.15873 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 158 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -82.9618 # GDT_score(maxd=8,maxw=2.9)= -85.4222 # GDT_score(maxd=8,maxw=3.2)= -83.2695 # GDT_score(maxd=8,maxw=3.5)= -80.5339 # GDT_score(maxd=10,maxw=3.8)= -82.0389 # GDT_score(maxd=10,maxw=4)= -80.0968 # GDT_score(maxd=10,maxw=4.2)= -78.0827 # GDT_score(maxd=12,maxw=4.3)= -80.8144 # GDT_score(maxd=12,maxw=4.5)= -78.8529 # GDT_score(maxd=12,maxw=4.7)= -76.7887 # GDT_score(maxd=14,maxw=5.2)= -74.9519 # GDT_score(maxd=14,maxw=5.5)= -71.9828 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1807.000 rmsd (weighted)= 4.591 (unweighted)= 17.805 superimposing iter= 1 total_weight= 6595.680 rmsd (weighted)= 1.463 (unweighted)= 17.984 superimposing iter= 2 total_weight= 3343.934 rmsd (weighted)= 0.805 (unweighted)= 18.038 superimposing iter= 3 total_weight= 1984.206 rmsd (weighted)= 0.604 (unweighted)= 18.053 superimposing iter= 4 total_weight= 1478.409 rmsd (weighted)= 0.531 (unweighted)= 18.058 superimposing iter= 5 total_weight= 1303.060 rmsd (weighted)= 0.499 (unweighted)= 18.060 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_634419946.pdb -s /var/tmp/to_scwrl_634419946.seq -o /var/tmp/from_scwrl_634419946.pdb > /var/tmp/scwrl_634419946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_634419946.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -82.9618 # GDT_score(maxd=8,maxw=2.9)= -85.6986 # GDT_score(maxd=8,maxw=3.2)= -83.458 # GDT_score(maxd=8,maxw=3.5)= -80.6836 # GDT_score(maxd=10,maxw=3.8)= -82.2114 # GDT_score(maxd=10,maxw=4)= -80.2221 # GDT_score(maxd=10,maxw=4.2)= -78.145 # GDT_score(maxd=12,maxw=4.3)= -80.9423 # GDT_score(maxd=12,maxw=4.5)= -78.9235 # GDT_score(maxd=12,maxw=4.7)= -76.8087 # GDT_score(maxd=14,maxw=5.2)= -74.8215 # GDT_score(maxd=14,maxw=5.5)= -71.7337 # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1589814652.pdb -s /var/tmp/to_scwrl_1589814652.seq -o /var/tmp/from_scwrl_1589814652.pdb > /var/tmp/scwrl_1589814652.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1589814652.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.904459 # GDT_score = -78.0255 # GDT_score(maxd=8,maxw=2.9)= -81.0944 # GDT_score(maxd=8,maxw=3.2)= -78.5543 # GDT_score(maxd=8,maxw=3.5)= -75.3384 # GDT_score(maxd=10,maxw=3.8)= -76.7536 # GDT_score(maxd=10,maxw=4)= -74.5935 # GDT_score(maxd=10,maxw=4.2)= -72.3806 # GDT_score(maxd=12,maxw=4.3)= -75.1453 # GDT_score(maxd=12,maxw=4.5)= -73.0101 # GDT_score(maxd=12,maxw=4.7)= -70.8447 # GDT_score(maxd=14,maxw=5.2)= -68.8029 # GDT_score(maxd=14,maxw=5.5)= -65.7713 # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1090370627.pdb -s /var/tmp/to_scwrl_1090370627.seq -o /var/tmp/from_scwrl_1090370627.pdb > /var/tmp/scwrl_1090370627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1090370627.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.904459 # GDT_score = -78.0255 # GDT_score(maxd=8,maxw=2.9)= -80.5006 # GDT_score(maxd=8,maxw=3.2)= -78.3163 # GDT_score(maxd=8,maxw=3.5)= -75.5396 # GDT_score(maxd=10,maxw=3.8)= -76.982 # GDT_score(maxd=10,maxw=4)= -75.0531 # GDT_score(maxd=10,maxw=4.2)= -73.0067 # GDT_score(maxd=12,maxw=4.3)= -75.6452 # GDT_score(maxd=12,maxw=4.5)= -73.6582 # GDT_score(maxd=12,maxw=4.7)= -71.5991 # GDT_score(maxd=14,maxw=5.2)= -69.7112 # GDT_score(maxd=14,maxw=5.5)= -66.7924 # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_749919475.pdb -s /var/tmp/to_scwrl_749919475.seq -o /var/tmp/from_scwrl_749919475.pdb > /var/tmp/scwrl_749919475.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_749919475.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.974522 # GDT_score = -78.8217 # GDT_score(maxd=8,maxw=2.9)= -82.0093 # GDT_score(maxd=8,maxw=3.2)= -79.2623 # GDT_score(maxd=8,maxw=3.5)= -75.7865 # GDT_score(maxd=10,maxw=3.8)= -77.4236 # GDT_score(maxd=10,maxw=4)= -75.1952 # GDT_score(maxd=10,maxw=4.2)= -72.8999 # GDT_score(maxd=12,maxw=4.3)= -76.0403 # GDT_score(maxd=12,maxw=4.5)= -73.8115 # GDT_score(maxd=12,maxw=4.7)= -71.5521 # GDT_score(maxd=14,maxw=5.2)= -69.6711 # GDT_score(maxd=14,maxw=5.5)= -66.5753 # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_69622569.pdb -s /var/tmp/to_scwrl_69622569.seq -o /var/tmp/from_scwrl_69622569.pdb > /var/tmp/scwrl_69622569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_69622569.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0317.try1-opt2.pdb looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -83.121 # GDT_score(maxd=8,maxw=2.9)= -85.7094 # GDT_score(maxd=8,maxw=3.2)= -83.4651 # GDT_score(maxd=8,maxw=3.5)= -80.6849 # GDT_score(maxd=10,maxw=3.8)= -82.2167 # GDT_score(maxd=10,maxw=4)= -80.2319 # GDT_score(maxd=10,maxw=4.2)= -78.1532 # GDT_score(maxd=12,maxw=4.3)= -80.9507 # GDT_score(maxd=12,maxw=4.5)= -78.9311 # GDT_score(maxd=12,maxw=4.7)= -76.8138 # GDT_score(maxd=14,maxw=5.2)= -74.8317 # GDT_score(maxd=14,maxw=5.5)= -71.7557 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1807.000 rmsd (weighted)= 4.557 (unweighted)= 17.761 superimposing iter= 1 total_weight= 6635.237 rmsd (weighted)= 1.451 (unweighted)= 17.917 superimposing iter= 2 total_weight= 3353.093 rmsd (weighted)= 0.798 (unweighted)= 17.962 superimposing iter= 3 total_weight= 1976.513 rmsd (weighted)= 0.603 (unweighted)= 17.972 superimposing iter= 4 total_weight= 1445.850 rmsd (weighted)= 0.539 (unweighted)= 17.974 superimposing iter= 5 total_weight= 1263.319 rmsd (weighted)= 0.517 (unweighted)= 17.975 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0317)P48.C and (T0317)G49.C only 0.000 apart, marking (T0317)G49.C as missing WARNING: atoms too close: (T0317)G49.N and (T0317)P50.N only 0.000 apart, marking (T0317)G49.N as missing WARNING: atoms too close: (T0317)G49.CA and (T0317)P50.CA only 0.000 apart, marking (T0317)G49.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.910828 # GDT_score = -78.1847 # GDT_score(maxd=8,maxw=2.9)= -81.4188 # GDT_score(maxd=8,maxw=3.2)= -78.8385 # GDT_score(maxd=8,maxw=3.5)= -75.59 # GDT_score(maxd=10,maxw=3.8)= -77.0345 # GDT_score(maxd=10,maxw=4)= -74.871 # GDT_score(maxd=10,maxw=4.2)= -72.6566 # GDT_score(maxd=12,maxw=4.3)= -75.4443 # GDT_score(maxd=12,maxw=4.5)= -73.3033 # GDT_score(maxd=12,maxw=4.7)= -71.1214 # GDT_score(maxd=14,maxw=5.2)= -69.0834 # GDT_score(maxd=14,maxw=5.5)= -66.0326 # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0317)R45.C and (T0317)Q46.C only 0.000 apart, marking (T0317)Q46.C as missing WARNING: atoms too close: (T0317)Q46.N and (T0317)Q47.N only 0.000 apart, marking (T0317)Q46.N as missing WARNING: atoms too close: (T0317)Q46.CA and (T0317)Q47.CA only 0.000 apart, marking (T0317)Q46.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.910828 # GDT_score = -78.6624 # GDT_score(maxd=8,maxw=2.9)= -81.1441 # GDT_score(maxd=8,maxw=3.2)= -78.8881 # GDT_score(maxd=8,maxw=3.5)= -76.0594 # GDT_score(maxd=10,maxw=3.8)= -77.5112 # GDT_score(maxd=10,maxw=4)= -75.5672 # GDT_score(maxd=10,maxw=4.2)= -73.5135 # GDT_score(maxd=12,maxw=4.3)= -76.1627 # GDT_score(maxd=12,maxw=4.5)= -74.1773 # GDT_score(maxd=12,maxw=4.7)= -72.1655 # GDT_score(maxd=14,maxw=5.2)= -70.2551 # GDT_score(maxd=14,maxw=5.5)= -67.3109 # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0317)P130.C and (T0317)V131.C only 0.000 apart, marking (T0317)V131.C as missing WARNING: atoms too close: (T0317)V131.N and (T0317)A132.N only 0.000 apart, marking (T0317)V131.N as missing WARNING: atoms too close: (T0317)V131.CA and (T0317)A132.CA only 0.000 apart, marking (T0317)V131.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0317)L70.C and (T0317)L71.C only 0.000 apart, marking (T0317)L71.C as missing WARNING: atoms too close: (T0317)L71.N and (T0317)T72.N only 0.000 apart, marking (T0317)L71.N as missing WARNING: atoms too close: (T0317)L71.CA and (T0317)T72.CA only 0.000 apart, marking (T0317)L71.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0317)A23.C and (T0317)A25.C only 0.000 apart, marking (T0317)A25.C as missing WARNING: atoms too close: (T0317)R24.N and (T0317)A26.N only 0.000 apart, marking (T0317)R24.N as missing WARNING: atoms too close: (T0317)R24.CA and (T0317)A26.CA only 0.000 apart, marking (T0317)R24.CA as missing WARNING: atoms too close: (T0317)L70.C and (T0317)L71.C only 0.000 apart, marking (T0317)L71.C as missing WARNING: atoms too close: (T0317)L71.N and (T0317)T72.N only 0.000 apart, marking (T0317)L71.N as missing WARNING: atoms too close: (T0317)L71.CA and (T0317)T72.CA only 0.000 apart, marking (T0317)L71.CA as missing WARNING: atoms too close: (T0317)L136.C and (T0317)G137.C only 0.000 apart, marking (T0317)G137.C as missing WARNING: atoms too close: (T0317)G137.N and (T0317)F138.N only 0.000 apart, marking (T0317)G137.N as missing WARNING: atoms too close: (T0317)G137.CA and (T0317)F138.CA only 0.000 apart, marking (T0317)G137.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0317.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1693384747.pdb -s /var/tmp/to_scwrl_1693384747.seq -o /var/tmp/from_scwrl_1693384747.pdb > /var/tmp/scwrl_1693384747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1693384747.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2004043964.pdb -s /var/tmp/to_scwrl_2004043964.seq -o /var/tmp/from_scwrl_2004043964.pdb > /var/tmp/scwrl_2004043964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2004043964.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1710738669.pdb -s /var/tmp/to_scwrl_1710738669.seq -o /var/tmp/from_scwrl_1710738669.pdb > /var/tmp/scwrl_1710738669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1710738669.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1770667114.pdb -s /var/tmp/to_scwrl_1770667114.seq -o /var/tmp/from_scwrl_1770667114.pdb > /var/tmp/scwrl_1770667114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770667114.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1184679042.pdb -s /var/tmp/to_scwrl_1184679042.seq -o /var/tmp/from_scwrl_1184679042.pdb > /var/tmp/scwrl_1184679042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1184679042.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_169089997.pdb -s /var/tmp/to_scwrl_169089997.seq -o /var/tmp/from_scwrl_169089997.pdb > /var/tmp/scwrl_169089997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_169089997.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_229789534.pdb -s /var/tmp/to_scwrl_229789534.seq -o /var/tmp/from_scwrl_229789534.pdb > /var/tmp/scwrl_229789534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_229789534.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_633476785.pdb -s /var/tmp/to_scwrl_633476785.seq -o /var/tmp/from_scwrl_633476785.pdb > /var/tmp/scwrl_633476785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_633476785.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1380413854.pdb -s /var/tmp/to_scwrl_1380413854.seq -o /var/tmp/from_scwrl_1380413854.pdb > /var/tmp/scwrl_1380413854.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380413854.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_898180861.pdb -s /var/tmp/to_scwrl_898180861.seq -o /var/tmp/from_scwrl_898180861.pdb > /var/tmp/scwrl_898180861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_898180861.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_976498787.pdb -s /var/tmp/to_scwrl_976498787.seq -o /var/tmp/from_scwrl_976498787.pdb > /var/tmp/scwrl_976498787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976498787.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_660376656.pdb -s /var/tmp/to_scwrl_660376656.seq -o /var/tmp/from_scwrl_660376656.pdb > /var/tmp/scwrl_660376656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_660376656.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1060379992.pdb -s /var/tmp/to_scwrl_1060379992.seq -o /var/tmp/from_scwrl_1060379992.pdb > /var/tmp/scwrl_1060379992.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1060379992.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1937195039.pdb -s /var/tmp/to_scwrl_1937195039.seq -o /var/tmp/from_scwrl_1937195039.pdb > /var/tmp/scwrl_1937195039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1937195039.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2143984983.pdb -s /var/tmp/to_scwrl_2143984983.seq -o /var/tmp/from_scwrl_2143984983.pdb > /var/tmp/scwrl_2143984983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2143984983.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_304700768.pdb -s /var/tmp/to_scwrl_304700768.seq -o /var/tmp/from_scwrl_304700768.pdb > /var/tmp/scwrl_304700768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_304700768.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_438326514.pdb -s /var/tmp/to_scwrl_438326514.seq -o /var/tmp/from_scwrl_438326514.pdb > /var/tmp/scwrl_438326514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_438326514.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2018860647.pdb -s /var/tmp/to_scwrl_2018860647.seq -o /var/tmp/from_scwrl_2018860647.pdb > /var/tmp/scwrl_2018860647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2018860647.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_906434661.pdb -s /var/tmp/to_scwrl_906434661.seq -o /var/tmp/from_scwrl_906434661.pdb > /var/tmp/scwrl_906434661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_906434661.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_280111313.pdb -s /var/tmp/to_scwrl_280111313.seq -o /var/tmp/from_scwrl_280111313.pdb > /var/tmp/scwrl_280111313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280111313.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1720184346.pdb -s /var/tmp/to_scwrl_1720184346.seq -o /var/tmp/from_scwrl_1720184346.pdb > /var/tmp/scwrl_1720184346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1720184346.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_66581897.pdb -s /var/tmp/to_scwrl_66581897.seq -o /var/tmp/from_scwrl_66581897.pdb > /var/tmp/scwrl_66581897.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_66581897.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_99889149.pdb -s /var/tmp/to_scwrl_99889149.seq -o /var/tmp/from_scwrl_99889149.pdb > /var/tmp/scwrl_99889149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_99889149.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1600045221.pdb -s /var/tmp/to_scwrl_1600045221.seq -o /var/tmp/from_scwrl_1600045221.pdb > /var/tmp/scwrl_1600045221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1600045221.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1657878391.pdb -s /var/tmp/to_scwrl_1657878391.seq -o /var/tmp/from_scwrl_1657878391.pdb > /var/tmp/scwrl_1657878391.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1657878391.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_241010021.pdb -s /var/tmp/to_scwrl_241010021.seq -o /var/tmp/from_scwrl_241010021.pdb > /var/tmp/scwrl_241010021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_241010021.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_86981520.pdb -s /var/tmp/to_scwrl_86981520.seq -o /var/tmp/from_scwrl_86981520.pdb > /var/tmp/scwrl_86981520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_86981520.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1100209397.pdb -s /var/tmp/to_scwrl_1100209397.seq -o /var/tmp/from_scwrl_1100209397.pdb > /var/tmp/scwrl_1100209397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1100209397.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1331380648.pdb -s /var/tmp/to_scwrl_1331380648.seq -o /var/tmp/from_scwrl_1331380648.pdb > /var/tmp/scwrl_1331380648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331380648.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_836900996.pdb -s /var/tmp/to_scwrl_836900996.seq -o /var/tmp/from_scwrl_836900996.pdb > /var/tmp/scwrl_836900996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_836900996.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1169831966.pdb -s /var/tmp/to_scwrl_1169831966.seq -o /var/tmp/from_scwrl_1169831966.pdb > /var/tmp/scwrl_1169831966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1169831966.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_877281750.pdb -s /var/tmp/to_scwrl_877281750.seq -o /var/tmp/from_scwrl_877281750.pdb > /var/tmp/scwrl_877281750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_877281750.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_693461313.pdb -s /var/tmp/to_scwrl_693461313.seq -o /var/tmp/from_scwrl_693461313.pdb > /var/tmp/scwrl_693461313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_693461313.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_733086989.pdb -s /var/tmp/to_scwrl_733086989.seq -o /var/tmp/from_scwrl_733086989.pdb > /var/tmp/scwrl_733086989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_733086989.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_500465217.pdb -s /var/tmp/to_scwrl_500465217.seq -o /var/tmp/from_scwrl_500465217.pdb > /var/tmp/scwrl_500465217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_500465217.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1878140355.pdb -s /var/tmp/to_scwrl_1878140355.seq -o /var/tmp/from_scwrl_1878140355.pdb > /var/tmp/scwrl_1878140355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1878140355.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_902176987.pdb -s /var/tmp/to_scwrl_902176987.seq -o /var/tmp/from_scwrl_902176987.pdb > /var/tmp/scwrl_902176987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902176987.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_730254751.pdb -s /var/tmp/to_scwrl_730254751.seq -o /var/tmp/from_scwrl_730254751.pdb > /var/tmp/scwrl_730254751.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_730254751.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_364133494.pdb -s /var/tmp/to_scwrl_364133494.seq -o /var/tmp/from_scwrl_364133494.pdb > /var/tmp/scwrl_364133494.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364133494.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_135107194.pdb -s /var/tmp/to_scwrl_135107194.seq -o /var/tmp/from_scwrl_135107194.pdb > /var/tmp/scwrl_135107194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_135107194.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1628435611.pdb -s /var/tmp/to_scwrl_1628435611.seq -o /var/tmp/from_scwrl_1628435611.pdb > /var/tmp/scwrl_1628435611.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1628435611.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1340632280.pdb -s /var/tmp/to_scwrl_1340632280.seq -o /var/tmp/from_scwrl_1340632280.pdb > /var/tmp/scwrl_1340632280.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1340632280.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_795483850.pdb -s /var/tmp/to_scwrl_795483850.seq -o /var/tmp/from_scwrl_795483850.pdb > /var/tmp/scwrl_795483850.log Error: Couldn't open file /var/tmp/from_scwrl_795483850.pdb or /var/tmp/from_scwrl_795483850.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_795483850_b.pdb or decoys//var/tmp/from_scwrl_795483850_b.pdb.gz for input Trying /var/tmp/from_scwrl_795483850_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_795483850_b.pdb or /var/tmp/from_scwrl_795483850_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_795483850_a.pdb or decoys//var/tmp/from_scwrl_795483850_a.pdb.gz for input Trying /var/tmp/from_scwrl_795483850_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_795483850_a.pdb or /var/tmp/from_scwrl_795483850_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_795483850.pdb or /var/tmp/from_scwrl_795483850_b.pdb or /var/tmp/from_scwrl_795483850_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_541331956.pdb -s /var/tmp/to_scwrl_541331956.seq -o /var/tmp/from_scwrl_541331956.pdb > /var/tmp/scwrl_541331956.log Error: Couldn't open file /var/tmp/from_scwrl_541331956.pdb or /var/tmp/from_scwrl_541331956.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_541331956_b.pdb or decoys//var/tmp/from_scwrl_541331956_b.pdb.gz for input Trying /var/tmp/from_scwrl_541331956_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_541331956_b.pdb or /var/tmp/from_scwrl_541331956_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_541331956_a.pdb or decoys//var/tmp/from_scwrl_541331956_a.pdb.gz for input Trying /var/tmp/from_scwrl_541331956_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_541331956_a.pdb or /var/tmp/from_scwrl_541331956_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_541331956.pdb or /var/tmp/from_scwrl_541331956_b.pdb or /var/tmp/from_scwrl_541331956_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1130343672.pdb -s /var/tmp/to_scwrl_1130343672.seq -o /var/tmp/from_scwrl_1130343672.pdb > /var/tmp/scwrl_1130343672.log Error: Couldn't open file /var/tmp/from_scwrl_1130343672.pdb or /var/tmp/from_scwrl_1130343672.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1130343672_b.pdb or decoys//var/tmp/from_scwrl_1130343672_b.pdb.gz for input Trying /var/tmp/from_scwrl_1130343672_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1130343672_b.pdb or /var/tmp/from_scwrl_1130343672_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1130343672_a.pdb or decoys//var/tmp/from_scwrl_1130343672_a.pdb.gz for input Trying /var/tmp/from_scwrl_1130343672_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1130343672_a.pdb or /var/tmp/from_scwrl_1130343672_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1130343672.pdb or /var/tmp/from_scwrl_1130343672_b.pdb or /var/tmp/from_scwrl_1130343672_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_791985187.pdb -s /var/tmp/to_scwrl_791985187.seq -o /var/tmp/from_scwrl_791985187.pdb > /var/tmp/scwrl_791985187.log Error: Couldn't open file /var/tmp/from_scwrl_791985187.pdb or /var/tmp/from_scwrl_791985187.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_791985187_b.pdb or decoys//var/tmp/from_scwrl_791985187_b.pdb.gz for input Trying /var/tmp/from_scwrl_791985187_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_791985187_b.pdb or /var/tmp/from_scwrl_791985187_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_791985187_a.pdb or decoys//var/tmp/from_scwrl_791985187_a.pdb.gz for input Trying /var/tmp/from_scwrl_791985187_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_791985187_a.pdb or /var/tmp/from_scwrl_791985187_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_791985187.pdb or /var/tmp/from_scwrl_791985187_b.pdb or /var/tmp/from_scwrl_791985187_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_846032725.pdb -s /var/tmp/to_scwrl_846032725.seq -o /var/tmp/from_scwrl_846032725.pdb > /var/tmp/scwrl_846032725.log Error: Couldn't open file /var/tmp/from_scwrl_846032725.pdb or /var/tmp/from_scwrl_846032725.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_846032725_b.pdb or decoys//var/tmp/from_scwrl_846032725_b.pdb.gz for input Trying /var/tmp/from_scwrl_846032725_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_846032725_b.pdb or /var/tmp/from_scwrl_846032725_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_846032725_a.pdb or decoys//var/tmp/from_scwrl_846032725_a.pdb.gz for input Trying /var/tmp/from_scwrl_846032725_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_846032725_a.pdb or /var/tmp/from_scwrl_846032725_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_846032725.pdb or /var/tmp/from_scwrl_846032725_b.pdb or /var/tmp/from_scwrl_846032725_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1568670186.pdb -s /var/tmp/to_scwrl_1568670186.seq -o /var/tmp/from_scwrl_1568670186.pdb > /var/tmp/scwrl_1568670186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1568670186.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_663362187.pdb -s /var/tmp/to_scwrl_663362187.seq -o /var/tmp/from_scwrl_663362187.pdb > /var/tmp/scwrl_663362187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_663362187.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1752467385.pdb -s /var/tmp/to_scwrl_1752467385.seq -o /var/tmp/from_scwrl_1752467385.pdb > /var/tmp/scwrl_1752467385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1752467385.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1848781500.pdb -s /var/tmp/to_scwrl_1848781500.seq -o /var/tmp/from_scwrl_1848781500.pdb > /var/tmp/scwrl_1848781500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1848781500.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_236062887.pdb -s /var/tmp/to_scwrl_236062887.seq -o /var/tmp/from_scwrl_236062887.pdb > /var/tmp/scwrl_236062887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_236062887.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1819049283.pdb -s /var/tmp/to_scwrl_1819049283.seq -o /var/tmp/from_scwrl_1819049283.pdb > /var/tmp/scwrl_1819049283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1819049283.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1948670649.pdb -s /var/tmp/to_scwrl_1948670649.seq -o /var/tmp/from_scwrl_1948670649.pdb > /var/tmp/scwrl_1948670649.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1948670649.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1836108108.pdb -s /var/tmp/to_scwrl_1836108108.seq -o /var/tmp/from_scwrl_1836108108.pdb > /var/tmp/scwrl_1836108108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836108108.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1329444027.pdb -s /var/tmp/to_scwrl_1329444027.seq -o /var/tmp/from_scwrl_1329444027.pdb > /var/tmp/scwrl_1329444027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329444027.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_42197023.pdb -s /var/tmp/to_scwrl_42197023.seq -o /var/tmp/from_scwrl_42197023.pdb > /var/tmp/scwrl_42197023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_42197023.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1923089628.pdb -s /var/tmp/to_scwrl_1923089628.seq -o /var/tmp/from_scwrl_1923089628.pdb > /var/tmp/scwrl_1923089628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1923089628.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_282169778.pdb -s /var/tmp/to_scwrl_282169778.seq -o /var/tmp/from_scwrl_282169778.pdb > /var/tmp/scwrl_282169778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_282169778.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1373577671.pdb -s /var/tmp/to_scwrl_1373577671.seq -o /var/tmp/from_scwrl_1373577671.pdb > /var/tmp/scwrl_1373577671.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1373577671.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_612506977.pdb -s /var/tmp/to_scwrl_612506977.seq -o /var/tmp/from_scwrl_612506977.pdb > /var/tmp/scwrl_612506977.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_612506977.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1452001744.pdb -s /var/tmp/to_scwrl_1452001744.seq -o /var/tmp/from_scwrl_1452001744.pdb > /var/tmp/scwrl_1452001744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1452001744.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_103375774.pdb -s /var/tmp/to_scwrl_103375774.seq -o /var/tmp/from_scwrl_103375774.pdb > /var/tmp/scwrl_103375774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_103375774.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1305968290.pdb -s /var/tmp/to_scwrl_1305968290.seq -o /var/tmp/from_scwrl_1305968290.pdb > /var/tmp/scwrl_1305968290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1305968290.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_37605087.pdb -s /var/tmp/to_scwrl_37605087.seq -o /var/tmp/from_scwrl_37605087.pdb > /var/tmp/scwrl_37605087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_37605087.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 6, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 131, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 287, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 289, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 291, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 293, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 331, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 333, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 335, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 337, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 359, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 361, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 363, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 365, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 367, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 369, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 371, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 373, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 391, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 393, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 395, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 397, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 399, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 401, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 403, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 405, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 467, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 469, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 471, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 473, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 483, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 485, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 487, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 489, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 527, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 529, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 531, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 533, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_603840991.pdb -s /var/tmp/to_scwrl_603840991.seq -o /var/tmp/from_scwrl_603840991.pdb > /var/tmp/scwrl_603840991.log Error: Couldn't open file /var/tmp/from_scwrl_603840991.pdb or /var/tmp/from_scwrl_603840991.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_603840991_b.pdb or decoys//var/tmp/from_scwrl_603840991_b.pdb.gz for input Trying /var/tmp/from_scwrl_603840991_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_603840991_b.pdb or /var/tmp/from_scwrl_603840991_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_603840991_a.pdb or decoys//var/tmp/from_scwrl_603840991_a.pdb.gz for input Trying /var/tmp/from_scwrl_603840991_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_603840991_a.pdb or /var/tmp/from_scwrl_603840991_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_603840991.pdb or /var/tmp/from_scwrl_603840991_b.pdb or /var/tmp/from_scwrl_603840991_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1036624999.pdb -s /var/tmp/to_scwrl_1036624999.seq -o /var/tmp/from_scwrl_1036624999.pdb > /var/tmp/scwrl_1036624999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1036624999.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_939782074.pdb -s /var/tmp/to_scwrl_939782074.seq -o /var/tmp/from_scwrl_939782074.pdb > /var/tmp/scwrl_939782074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939782074.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1334095742.pdb -s /var/tmp/to_scwrl_1334095742.seq -o /var/tmp/from_scwrl_1334095742.pdb > /var/tmp/scwrl_1334095742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1334095742.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1400758492.pdb -s /var/tmp/to_scwrl_1400758492.seq -o /var/tmp/from_scwrl_1400758492.pdb > /var/tmp/scwrl_1400758492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1400758492.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1074889267.pdb -s /var/tmp/to_scwrl_1074889267.seq -o /var/tmp/from_scwrl_1074889267.pdb > /var/tmp/scwrl_1074889267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1074889267.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_815047707.pdb -s /var/tmp/to_scwrl_815047707.seq -o /var/tmp/from_scwrl_815047707.pdb > /var/tmp/scwrl_815047707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_815047707.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_593907126.pdb -s /var/tmp/to_scwrl_593907126.seq -o /var/tmp/from_scwrl_593907126.pdb > /var/tmp/scwrl_593907126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_593907126.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1870373118.pdb -s /var/tmp/to_scwrl_1870373118.seq -o /var/tmp/from_scwrl_1870373118.pdb > /var/tmp/scwrl_1870373118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1870373118.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1356379663.pdb -s /var/tmp/to_scwrl_1356379663.seq -o /var/tmp/from_scwrl_1356379663.pdb > /var/tmp/scwrl_1356379663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1356379663.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1724250798.pdb -s /var/tmp/to_scwrl_1724250798.seq -o /var/tmp/from_scwrl_1724250798.pdb > /var/tmp/scwrl_1724250798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724250798.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_514874658.pdb -s /var/tmp/to_scwrl_514874658.seq -o /var/tmp/from_scwrl_514874658.pdb > /var/tmp/scwrl_514874658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514874658.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_54928741.pdb -s /var/tmp/to_scwrl_54928741.seq -o /var/tmp/from_scwrl_54928741.pdb > /var/tmp/scwrl_54928741.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_54928741.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1145437338.pdb -s /var/tmp/to_scwrl_1145437338.seq -o /var/tmp/from_scwrl_1145437338.pdb > /var/tmp/scwrl_1145437338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1145437338.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1178236844.pdb -s /var/tmp/to_scwrl_1178236844.seq -o /var/tmp/from_scwrl_1178236844.pdb > /var/tmp/scwrl_1178236844.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1178236844.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1807396126.pdb -s /var/tmp/to_scwrl_1807396126.seq -o /var/tmp/from_scwrl_1807396126.pdb > /var/tmp/scwrl_1807396126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1807396126.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_846735192.pdb -s /var/tmp/to_scwrl_846735192.seq -o /var/tmp/from_scwrl_846735192.pdb > /var/tmp/scwrl_846735192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_846735192.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1414299731.pdb -s /var/tmp/to_scwrl_1414299731.seq -o /var/tmp/from_scwrl_1414299731.pdb > /var/tmp/scwrl_1414299731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414299731.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1478961762.pdb -s /var/tmp/to_scwrl_1478961762.seq -o /var/tmp/from_scwrl_1478961762.pdb > /var/tmp/scwrl_1478961762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1478961762.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 Skipped atom 150, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 152, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 154, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 156, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 458, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 460, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 462, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 464, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_647922194.pdb -s /var/tmp/to_scwrl_647922194.seq -o /var/tmp/from_scwrl_647922194.pdb > /var/tmp/scwrl_647922194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_647922194.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1102924192.pdb -s /var/tmp/to_scwrl_1102924192.seq -o /var/tmp/from_scwrl_1102924192.pdb > /var/tmp/scwrl_1102924192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1102924192.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_660922144.pdb -s /var/tmp/to_scwrl_660922144.seq -o /var/tmp/from_scwrl_660922144.pdb > /var/tmp/scwrl_660922144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_660922144.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_690119217.pdb -s /var/tmp/to_scwrl_690119217.seq -o /var/tmp/from_scwrl_690119217.pdb > /var/tmp/scwrl_690119217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_690119217.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_878530175.pdb -s /var/tmp/to_scwrl_878530175.seq -o /var/tmp/from_scwrl_878530175.pdb > /var/tmp/scwrl_878530175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_878530175.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_943091922.pdb -s /var/tmp/to_scwrl_943091922.seq -o /var/tmp/from_scwrl_943091922.pdb > /var/tmp/scwrl_943091922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_943091922.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2063696888.pdb -s /var/tmp/to_scwrl_2063696888.seq -o /var/tmp/from_scwrl_2063696888.pdb > /var/tmp/scwrl_2063696888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2063696888.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1491037151.pdb -s /var/tmp/to_scwrl_1491037151.seq -o /var/tmp/from_scwrl_1491037151.pdb > /var/tmp/scwrl_1491037151.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1491037151.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_247610020.pdb -s /var/tmp/to_scwrl_247610020.seq -o /var/tmp/from_scwrl_247610020.pdb > /var/tmp/scwrl_247610020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_247610020.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_19589016.pdb -s /var/tmp/to_scwrl_19589016.seq -o /var/tmp/from_scwrl_19589016.pdb > /var/tmp/scwrl_19589016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_19589016.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_649521795.pdb -s /var/tmp/to_scwrl_649521795.seq -o /var/tmp/from_scwrl_649521795.pdb > /var/tmp/scwrl_649521795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_649521795.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_285215107.pdb -s /var/tmp/to_scwrl_285215107.seq -o /var/tmp/from_scwrl_285215107.pdb > /var/tmp/scwrl_285215107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_285215107.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_623430007.pdb -s /var/tmp/to_scwrl_623430007.seq -o /var/tmp/from_scwrl_623430007.pdb > /var/tmp/scwrl_623430007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623430007.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1686146794.pdb -s /var/tmp/to_scwrl_1686146794.seq -o /var/tmp/from_scwrl_1686146794.pdb > /var/tmp/scwrl_1686146794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1686146794.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1224997180.pdb -s /var/tmp/to_scwrl_1224997180.seq -o /var/tmp/from_scwrl_1224997180.pdb > /var/tmp/scwrl_1224997180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1224997180.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1957525749.pdb -s /var/tmp/to_scwrl_1957525749.seq -o /var/tmp/from_scwrl_1957525749.pdb > /var/tmp/scwrl_1957525749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1957525749.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_939421640.pdb -s /var/tmp/to_scwrl_939421640.seq -o /var/tmp/from_scwrl_939421640.pdb > /var/tmp/scwrl_939421640.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939421640.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_152402801.pdb -s /var/tmp/to_scwrl_152402801.seq -o /var/tmp/from_scwrl_152402801.pdb > /var/tmp/scwrl_152402801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152402801.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_625089810.pdb -s /var/tmp/to_scwrl_625089810.seq -o /var/tmp/from_scwrl_625089810.pdb > /var/tmp/scwrl_625089810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_625089810.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1533328766.pdb -s /var/tmp/to_scwrl_1533328766.seq -o /var/tmp/from_scwrl_1533328766.pdb > /var/tmp/scwrl_1533328766.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1533328766.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2022775919.pdb -s /var/tmp/to_scwrl_2022775919.seq -o /var/tmp/from_scwrl_2022775919.pdb > /var/tmp/scwrl_2022775919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022775919.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1981469473.pdb -s /var/tmp/to_scwrl_1981469473.seq -o /var/tmp/from_scwrl_1981469473.pdb > /var/tmp/scwrl_1981469473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1981469473.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1110095917.pdb -s /var/tmp/to_scwrl_1110095917.seq -o /var/tmp/from_scwrl_1110095917.pdb > /var/tmp/scwrl_1110095917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1110095917.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_390166930.pdb -s /var/tmp/to_scwrl_390166930.seq -o /var/tmp/from_scwrl_390166930.pdb > /var/tmp/scwrl_390166930.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_390166930.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2036398214.pdb -s /var/tmp/to_scwrl_2036398214.seq -o /var/tmp/from_scwrl_2036398214.pdb > /var/tmp/scwrl_2036398214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036398214.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_108049609.pdb -s /var/tmp/to_scwrl_108049609.seq -o /var/tmp/from_scwrl_108049609.pdb > /var/tmp/scwrl_108049609.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_108049609.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1568403775.pdb -s /var/tmp/to_scwrl_1568403775.seq -o /var/tmp/from_scwrl_1568403775.pdb > /var/tmp/scwrl_1568403775.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1568403775.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1696310693.pdb -s /var/tmp/to_scwrl_1696310693.seq -o /var/tmp/from_scwrl_1696310693.pdb > /var/tmp/scwrl_1696310693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1696310693.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_954784801.pdb -s /var/tmp/to_scwrl_954784801.seq -o /var/tmp/from_scwrl_954784801.pdb > /var/tmp/scwrl_954784801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_954784801.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_835219860.pdb -s /var/tmp/to_scwrl_835219860.seq -o /var/tmp/from_scwrl_835219860.pdb > /var/tmp/scwrl_835219860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_835219860.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1027788810.pdb -s /var/tmp/to_scwrl_1027788810.seq -o /var/tmp/from_scwrl_1027788810.pdb > /var/tmp/scwrl_1027788810.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1027788810.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1602706994.pdb -s /var/tmp/to_scwrl_1602706994.seq -o /var/tmp/from_scwrl_1602706994.pdb > /var/tmp/scwrl_1602706994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1602706994.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1938144053.pdb -s /var/tmp/to_scwrl_1938144053.seq -o /var/tmp/from_scwrl_1938144053.pdb > /var/tmp/scwrl_1938144053.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1938144053.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1688710953.pdb -s /var/tmp/to_scwrl_1688710953.seq -o /var/tmp/from_scwrl_1688710953.pdb > /var/tmp/scwrl_1688710953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1688710953.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_145342564.pdb -s /var/tmp/to_scwrl_145342564.seq -o /var/tmp/from_scwrl_145342564.pdb > /var/tmp/scwrl_145342564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_145342564.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_669190581.pdb -s /var/tmp/to_scwrl_669190581.seq -o /var/tmp/from_scwrl_669190581.pdb > /var/tmp/scwrl_669190581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669190581.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_484319228.pdb -s /var/tmp/to_scwrl_484319228.seq -o /var/tmp/from_scwrl_484319228.pdb > /var/tmp/scwrl_484319228.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_484319228.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_61555806.pdb -s /var/tmp/to_scwrl_61555806.seq -o /var/tmp/from_scwrl_61555806.pdb > /var/tmp/scwrl_61555806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_61555806.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_12744085.pdb -s /var/tmp/to_scwrl_12744085.seq -o /var/tmp/from_scwrl_12744085.pdb > /var/tmp/scwrl_12744085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12744085.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_731929248.pdb -s /var/tmp/to_scwrl_731929248.seq -o /var/tmp/from_scwrl_731929248.pdb > /var/tmp/scwrl_731929248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_731929248.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_81144822.pdb -s /var/tmp/to_scwrl_81144822.seq -o /var/tmp/from_scwrl_81144822.pdb > /var/tmp/scwrl_81144822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_81144822.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_662265881.pdb -s /var/tmp/to_scwrl_662265881.seq -o /var/tmp/from_scwrl_662265881.pdb > /var/tmp/scwrl_662265881.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_662265881.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1017144355.pdb -s /var/tmp/to_scwrl_1017144355.seq -o /var/tmp/from_scwrl_1017144355.pdb > /var/tmp/scwrl_1017144355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1017144355.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_704574829.pdb -s /var/tmp/to_scwrl_704574829.seq -o /var/tmp/from_scwrl_704574829.pdb > /var/tmp/scwrl_704574829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704574829.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_200929028.pdb -s /var/tmp/to_scwrl_200929028.seq -o /var/tmp/from_scwrl_200929028.pdb > /var/tmp/scwrl_200929028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_200929028.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_94657888.pdb -s /var/tmp/to_scwrl_94657888.seq -o /var/tmp/from_scwrl_94657888.pdb > /var/tmp/scwrl_94657888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_94657888.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_514616932.pdb -s /var/tmp/to_scwrl_514616932.seq -o /var/tmp/from_scwrl_514616932.pdb > /var/tmp/scwrl_514616932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514616932.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1140350667.pdb -s /var/tmp/to_scwrl_1140350667.seq -o /var/tmp/from_scwrl_1140350667.pdb > /var/tmp/scwrl_1140350667.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1140350667.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_247060690.pdb -s /var/tmp/to_scwrl_247060690.seq -o /var/tmp/from_scwrl_247060690.pdb > /var/tmp/scwrl_247060690.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_247060690.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1139706741.pdb -s /var/tmp/to_scwrl_1139706741.seq -o /var/tmp/from_scwrl_1139706741.pdb > /var/tmp/scwrl_1139706741.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1139706741.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_526195787.pdb -s /var/tmp/to_scwrl_526195787.seq -o /var/tmp/from_scwrl_526195787.pdb > /var/tmp/scwrl_526195787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_526195787.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_122352962.pdb -s /var/tmp/to_scwrl_122352962.seq -o /var/tmp/from_scwrl_122352962.pdb > /var/tmp/scwrl_122352962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_122352962.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_973692568.pdb -s /var/tmp/to_scwrl_973692568.seq -o /var/tmp/from_scwrl_973692568.pdb > /var/tmp/scwrl_973692568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_973692568.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1636291705.pdb -s /var/tmp/to_scwrl_1636291705.seq -o /var/tmp/from_scwrl_1636291705.pdb > /var/tmp/scwrl_1636291705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1636291705.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_512519893.pdb -s /var/tmp/to_scwrl_512519893.seq -o /var/tmp/from_scwrl_512519893.pdb > /var/tmp/scwrl_512519893.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_512519893.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_862607135.pdb -s /var/tmp/to_scwrl_862607135.seq -o /var/tmp/from_scwrl_862607135.pdb > /var/tmp/scwrl_862607135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862607135.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1744341314.pdb -s /var/tmp/to_scwrl_1744341314.seq -o /var/tmp/from_scwrl_1744341314.pdb > /var/tmp/scwrl_1744341314.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744341314.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2080923668.pdb -s /var/tmp/to_scwrl_2080923668.seq -o /var/tmp/from_scwrl_2080923668.pdb > /var/tmp/scwrl_2080923668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2080923668.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_411434181.pdb -s /var/tmp/to_scwrl_411434181.seq -o /var/tmp/from_scwrl_411434181.pdb > /var/tmp/scwrl_411434181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_411434181.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_551642469.pdb -s /var/tmp/to_scwrl_551642469.seq -o /var/tmp/from_scwrl_551642469.pdb > /var/tmp/scwrl_551642469.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_551642469.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_768659881.pdb -s /var/tmp/to_scwrl_768659881.seq -o /var/tmp/from_scwrl_768659881.pdb > /var/tmp/scwrl_768659881.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_768659881.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1439222990.pdb -s /var/tmp/to_scwrl_1439222990.seq -o /var/tmp/from_scwrl_1439222990.pdb > /var/tmp/scwrl_1439222990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1439222990.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_6865816.pdb -s /var/tmp/to_scwrl_6865816.seq -o /var/tmp/from_scwrl_6865816.pdb > /var/tmp/scwrl_6865816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6865816.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_559320287.pdb -s /var/tmp/to_scwrl_559320287.seq -o /var/tmp/from_scwrl_559320287.pdb > /var/tmp/scwrl_559320287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559320287.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_980450297.pdb -s /var/tmp/to_scwrl_980450297.seq -o /var/tmp/from_scwrl_980450297.pdb > /var/tmp/scwrl_980450297.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_980450297.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_152208381.pdb -s /var/tmp/to_scwrl_152208381.seq -o /var/tmp/from_scwrl_152208381.pdb > /var/tmp/scwrl_152208381.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_152208381.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1228510867.pdb -s /var/tmp/to_scwrl_1228510867.seq -o /var/tmp/from_scwrl_1228510867.pdb > /var/tmp/scwrl_1228510867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1228510867.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1464769525.pdb -s /var/tmp/to_scwrl_1464769525.seq -o /var/tmp/from_scwrl_1464769525.pdb > /var/tmp/scwrl_1464769525.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1464769525.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_213764187.pdb -s /var/tmp/to_scwrl_213764187.seq -o /var/tmp/from_scwrl_213764187.pdb > /var/tmp/scwrl_213764187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_213764187.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1241254953.pdb -s /var/tmp/to_scwrl_1241254953.seq -o /var/tmp/from_scwrl_1241254953.pdb > /var/tmp/scwrl_1241254953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1241254953.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_49215126.pdb -s /var/tmp/to_scwrl_49215126.seq -o /var/tmp/from_scwrl_49215126.pdb > /var/tmp/scwrl_49215126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_49215126.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_294909009.pdb -s /var/tmp/to_scwrl_294909009.seq -o /var/tmp/from_scwrl_294909009.pdb > /var/tmp/scwrl_294909009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_294909009.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1903520834.pdb -s /var/tmp/to_scwrl_1903520834.seq -o /var/tmp/from_scwrl_1903520834.pdb > /var/tmp/scwrl_1903520834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1903520834.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1066359482.pdb -s /var/tmp/to_scwrl_1066359482.seq -o /var/tmp/from_scwrl_1066359482.pdb > /var/tmp/scwrl_1066359482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066359482.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_999483838.pdb -s /var/tmp/to_scwrl_999483838.seq -o /var/tmp/from_scwrl_999483838.pdb > /var/tmp/scwrl_999483838.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999483838.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2104449862.pdb -s /var/tmp/to_scwrl_2104449862.seq -o /var/tmp/from_scwrl_2104449862.pdb > /var/tmp/scwrl_2104449862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2104449862.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1161017369.pdb -s /var/tmp/to_scwrl_1161017369.seq -o /var/tmp/from_scwrl_1161017369.pdb > /var/tmp/scwrl_1161017369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1161017369.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1514100769.pdb -s /var/tmp/to_scwrl_1514100769.seq -o /var/tmp/from_scwrl_1514100769.pdb > /var/tmp/scwrl_1514100769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1514100769.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1097316882.pdb -s /var/tmp/to_scwrl_1097316882.seq -o /var/tmp/from_scwrl_1097316882.pdb > /var/tmp/scwrl_1097316882.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1097316882.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1408078059.pdb -s /var/tmp/to_scwrl_1408078059.seq -o /var/tmp/from_scwrl_1408078059.pdb > /var/tmp/scwrl_1408078059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408078059.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_506323864.pdb -s /var/tmp/to_scwrl_506323864.seq -o /var/tmp/from_scwrl_506323864.pdb > /var/tmp/scwrl_506323864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_506323864.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1623512670.pdb -s /var/tmp/to_scwrl_1623512670.seq -o /var/tmp/from_scwrl_1623512670.pdb > /var/tmp/scwrl_1623512670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1623512670.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1530431022.pdb -s /var/tmp/to_scwrl_1530431022.seq -o /var/tmp/from_scwrl_1530431022.pdb > /var/tmp/scwrl_1530431022.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1530431022.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1480016431.pdb -s /var/tmp/to_scwrl_1480016431.seq -o /var/tmp/from_scwrl_1480016431.pdb > /var/tmp/scwrl_1480016431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1480016431.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1112320728.pdb -s /var/tmp/to_scwrl_1112320728.seq -o /var/tmp/from_scwrl_1112320728.pdb > /var/tmp/scwrl_1112320728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1112320728.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2042950915.pdb -s /var/tmp/to_scwrl_2042950915.seq -o /var/tmp/from_scwrl_2042950915.pdb > /var/tmp/scwrl_2042950915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2042950915.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_195139919.pdb -s /var/tmp/to_scwrl_195139919.seq -o /var/tmp/from_scwrl_195139919.pdb > /var/tmp/scwrl_195139919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_195139919.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_709178396.pdb -s /var/tmp/to_scwrl_709178396.seq -o /var/tmp/from_scwrl_709178396.pdb > /var/tmp/scwrl_709178396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_709178396.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1976390936.pdb -s /var/tmp/to_scwrl_1976390936.seq -o /var/tmp/from_scwrl_1976390936.pdb > /var/tmp/scwrl_1976390936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1976390936.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_606574101.pdb -s /var/tmp/to_scwrl_606574101.seq -o /var/tmp/from_scwrl_606574101.pdb > /var/tmp/scwrl_606574101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_606574101.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1260820864.pdb -s /var/tmp/to_scwrl_1260820864.seq -o /var/tmp/from_scwrl_1260820864.pdb > /var/tmp/scwrl_1260820864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1260820864.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_597567170.pdb -s /var/tmp/to_scwrl_597567170.seq -o /var/tmp/from_scwrl_597567170.pdb > /var/tmp/scwrl_597567170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_597567170.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2045797091.pdb -s /var/tmp/to_scwrl_2045797091.seq -o /var/tmp/from_scwrl_2045797091.pdb > /var/tmp/scwrl_2045797091.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2045797091.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1267686681.pdb -s /var/tmp/to_scwrl_1267686681.seq -o /var/tmp/from_scwrl_1267686681.pdb > /var/tmp/scwrl_1267686681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1267686681.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1156887457.pdb -s /var/tmp/to_scwrl_1156887457.seq -o /var/tmp/from_scwrl_1156887457.pdb > /var/tmp/scwrl_1156887457.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1156887457.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_878763742.pdb -s /var/tmp/to_scwrl_878763742.seq -o /var/tmp/from_scwrl_878763742.pdb > /var/tmp/scwrl_878763742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_878763742.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1419895062.pdb -s /var/tmp/to_scwrl_1419895062.seq -o /var/tmp/from_scwrl_1419895062.pdb > /var/tmp/scwrl_1419895062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419895062.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_237914678.pdb -s /var/tmp/to_scwrl_237914678.seq -o /var/tmp/from_scwrl_237914678.pdb > /var/tmp/scwrl_237914678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_237914678.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_196049620.pdb -s /var/tmp/to_scwrl_196049620.seq -o /var/tmp/from_scwrl_196049620.pdb > /var/tmp/scwrl_196049620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_196049620.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1633659249.pdb -s /var/tmp/to_scwrl_1633659249.seq -o /var/tmp/from_scwrl_1633659249.pdb > /var/tmp/scwrl_1633659249.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1633659249.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1479169631.pdb -s /var/tmp/to_scwrl_1479169631.seq -o /var/tmp/from_scwrl_1479169631.pdb > /var/tmp/scwrl_1479169631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1479169631.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_245264746.pdb -s /var/tmp/to_scwrl_245264746.seq -o /var/tmp/from_scwrl_245264746.pdb > /var/tmp/scwrl_245264746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_245264746.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1928568258.pdb -s /var/tmp/to_scwrl_1928568258.seq -o /var/tmp/from_scwrl_1928568258.pdb > /var/tmp/scwrl_1928568258.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1928568258.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1235206818.pdb -s /var/tmp/to_scwrl_1235206818.seq -o /var/tmp/from_scwrl_1235206818.pdb > /var/tmp/scwrl_1235206818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1235206818.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1311624227.pdb -s /var/tmp/to_scwrl_1311624227.seq -o /var/tmp/from_scwrl_1311624227.pdb > /var/tmp/scwrl_1311624227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1311624227.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_780568449.pdb -s /var/tmp/to_scwrl_780568449.seq -o /var/tmp/from_scwrl_780568449.pdb > /var/tmp/scwrl_780568449.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_780568449.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1192173033.pdb -s /var/tmp/to_scwrl_1192173033.seq -o /var/tmp/from_scwrl_1192173033.pdb > /var/tmp/scwrl_1192173033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1192173033.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_325157951.pdb -s /var/tmp/to_scwrl_325157951.seq -o /var/tmp/from_scwrl_325157951.pdb > /var/tmp/scwrl_325157951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_325157951.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_147185572.pdb -s /var/tmp/to_scwrl_147185572.seq -o /var/tmp/from_scwrl_147185572.pdb > /var/tmp/scwrl_147185572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_147185572.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_142006270.pdb -s /var/tmp/to_scwrl_142006270.seq -o /var/tmp/from_scwrl_142006270.pdb > /var/tmp/scwrl_142006270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_142006270.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1733236010.pdb -s /var/tmp/to_scwrl_1733236010.seq -o /var/tmp/from_scwrl_1733236010.pdb > /var/tmp/scwrl_1733236010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1733236010.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_653509436.pdb -s /var/tmp/to_scwrl_653509436.seq -o /var/tmp/from_scwrl_653509436.pdb > /var/tmp/scwrl_653509436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_653509436.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1765518940.pdb -s /var/tmp/to_scwrl_1765518940.seq -o /var/tmp/from_scwrl_1765518940.pdb > /var/tmp/scwrl_1765518940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1765518940.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1116183385.pdb -s /var/tmp/to_scwrl_1116183385.seq -o /var/tmp/from_scwrl_1116183385.pdb > /var/tmp/scwrl_1116183385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1116183385.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2133525868.pdb -s /var/tmp/to_scwrl_2133525868.seq -o /var/tmp/from_scwrl_2133525868.pdb > /var/tmp/scwrl_2133525868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2133525868.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_730356022.pdb -s /var/tmp/to_scwrl_730356022.seq -o /var/tmp/from_scwrl_730356022.pdb > /var/tmp/scwrl_730356022.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_730356022.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1011650654.pdb -s /var/tmp/to_scwrl_1011650654.seq -o /var/tmp/from_scwrl_1011650654.pdb > /var/tmp/scwrl_1011650654.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1011650654.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_181182140.pdb -s /var/tmp/to_scwrl_181182140.seq -o /var/tmp/from_scwrl_181182140.pdb > /var/tmp/scwrl_181182140.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_181182140.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1439534417.pdb -s /var/tmp/to_scwrl_1439534417.seq -o /var/tmp/from_scwrl_1439534417.pdb > /var/tmp/scwrl_1439534417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1439534417.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_840557943.pdb -s /var/tmp/to_scwrl_840557943.seq -o /var/tmp/from_scwrl_840557943.pdb > /var/tmp/scwrl_840557943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_840557943.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_787756241.pdb -s /var/tmp/to_scwrl_787756241.seq -o /var/tmp/from_scwrl_787756241.pdb > /var/tmp/scwrl_787756241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_787756241.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_552871636.pdb -s /var/tmp/to_scwrl_552871636.seq -o /var/tmp/from_scwrl_552871636.pdb > /var/tmp/scwrl_552871636.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_552871636.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1438125113.pdb -s /var/tmp/to_scwrl_1438125113.seq -o /var/tmp/from_scwrl_1438125113.pdb > /var/tmp/scwrl_1438125113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1438125113.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_686069686.pdb -s /var/tmp/to_scwrl_686069686.seq -o /var/tmp/from_scwrl_686069686.pdb > /var/tmp/scwrl_686069686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_686069686.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1820558317.pdb -s /var/tmp/to_scwrl_1820558317.seq -o /var/tmp/from_scwrl_1820558317.pdb > /var/tmp/scwrl_1820558317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820558317.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_447528924.pdb -s /var/tmp/to_scwrl_447528924.seq -o /var/tmp/from_scwrl_447528924.pdb > /var/tmp/scwrl_447528924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_447528924.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1564833427.pdb -s /var/tmp/to_scwrl_1564833427.seq -o /var/tmp/from_scwrl_1564833427.pdb > /var/tmp/scwrl_1564833427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1564833427.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1092969732.pdb -s /var/tmp/to_scwrl_1092969732.seq -o /var/tmp/from_scwrl_1092969732.pdb > /var/tmp/scwrl_1092969732.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1092969732.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_685443602.pdb -s /var/tmp/to_scwrl_685443602.seq -o /var/tmp/from_scwrl_685443602.pdb > /var/tmp/scwrl_685443602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_685443602.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1760883047.pdb -s /var/tmp/to_scwrl_1760883047.seq -o /var/tmp/from_scwrl_1760883047.pdb > /var/tmp/scwrl_1760883047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1760883047.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_579145335.pdb -s /var/tmp/to_scwrl_579145335.seq -o /var/tmp/from_scwrl_579145335.pdb > /var/tmp/scwrl_579145335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_579145335.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_17129587.pdb -s /var/tmp/to_scwrl_17129587.seq -o /var/tmp/from_scwrl_17129587.pdb > /var/tmp/scwrl_17129587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_17129587.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2006147793.pdb -s /var/tmp/to_scwrl_2006147793.seq -o /var/tmp/from_scwrl_2006147793.pdb > /var/tmp/scwrl_2006147793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2006147793.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_360229946.pdb -s /var/tmp/to_scwrl_360229946.seq -o /var/tmp/from_scwrl_360229946.pdb > /var/tmp/scwrl_360229946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_360229946.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1252336405.pdb -s /var/tmp/to_scwrl_1252336405.seq -o /var/tmp/from_scwrl_1252336405.pdb > /var/tmp/scwrl_1252336405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1252336405.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1170288374.pdb -s /var/tmp/to_scwrl_1170288374.seq -o /var/tmp/from_scwrl_1170288374.pdb > /var/tmp/scwrl_1170288374.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1170288374.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1140798394.pdb -s /var/tmp/to_scwrl_1140798394.seq -o /var/tmp/from_scwrl_1140798394.pdb > /var/tmp/scwrl_1140798394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1140798394.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_297025793.pdb -s /var/tmp/to_scwrl_297025793.seq -o /var/tmp/from_scwrl_297025793.pdb > /var/tmp/scwrl_297025793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_297025793.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 438, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 440, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 442, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 444, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1495446325.pdb -s /var/tmp/to_scwrl_1495446325.seq -o /var/tmp/from_scwrl_1495446325.pdb > /var/tmp/scwrl_1495446325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1495446325.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1287983966.pdb -s /var/tmp/to_scwrl_1287983966.seq -o /var/tmp/from_scwrl_1287983966.pdb > /var/tmp/scwrl_1287983966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1287983966.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_439032063.pdb -s /var/tmp/to_scwrl_439032063.seq -o /var/tmp/from_scwrl_439032063.pdb > /var/tmp/scwrl_439032063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_439032063.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1081198688.pdb -s /var/tmp/to_scwrl_1081198688.seq -o /var/tmp/from_scwrl_1081198688.pdb > /var/tmp/scwrl_1081198688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1081198688.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1941493403.pdb -s /var/tmp/to_scwrl_1941493403.seq -o /var/tmp/from_scwrl_1941493403.pdb > /var/tmp/scwrl_1941493403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1941493403.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_57067356.pdb -s /var/tmp/to_scwrl_57067356.seq -o /var/tmp/from_scwrl_57067356.pdb > /var/tmp/scwrl_57067356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_57067356.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_49898428.pdb -s /var/tmp/to_scwrl_49898428.seq -o /var/tmp/from_scwrl_49898428.pdb > /var/tmp/scwrl_49898428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_49898428.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1927535624.pdb -s /var/tmp/to_scwrl_1927535624.seq -o /var/tmp/from_scwrl_1927535624.pdb > /var/tmp/scwrl_1927535624.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1927535624.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_787423378.pdb -s /var/tmp/to_scwrl_787423378.seq -o /var/tmp/from_scwrl_787423378.pdb > /var/tmp/scwrl_787423378.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_787423378.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1061549082.pdb -s /var/tmp/to_scwrl_1061549082.seq -o /var/tmp/from_scwrl_1061549082.pdb > /var/tmp/scwrl_1061549082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1061549082.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2108717764.pdb -s /var/tmp/to_scwrl_2108717764.seq -o /var/tmp/from_scwrl_2108717764.pdb > /var/tmp/scwrl_2108717764.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2108717764.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_79474148.pdb -s /var/tmp/to_scwrl_79474148.seq -o /var/tmp/from_scwrl_79474148.pdb > /var/tmp/scwrl_79474148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_79474148.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1902107025.pdb -s /var/tmp/to_scwrl_1902107025.seq -o /var/tmp/from_scwrl_1902107025.pdb > /var/tmp/scwrl_1902107025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1902107025.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_748990359.pdb -s /var/tmp/to_scwrl_748990359.seq -o /var/tmp/from_scwrl_748990359.pdb > /var/tmp/scwrl_748990359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_748990359.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_632345784.pdb -s /var/tmp/to_scwrl_632345784.seq -o /var/tmp/from_scwrl_632345784.pdb > /var/tmp/scwrl_632345784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_632345784.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1192748491.pdb -s /var/tmp/to_scwrl_1192748491.seq -o /var/tmp/from_scwrl_1192748491.pdb > /var/tmp/scwrl_1192748491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1192748491.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1435060044.pdb -s /var/tmp/to_scwrl_1435060044.seq -o /var/tmp/from_scwrl_1435060044.pdb > /var/tmp/scwrl_1435060044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1435060044.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_305420454.pdb -s /var/tmp/to_scwrl_305420454.seq -o /var/tmp/from_scwrl_305420454.pdb > /var/tmp/scwrl_305420454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_305420454.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1640277415.pdb -s /var/tmp/to_scwrl_1640277415.seq -o /var/tmp/from_scwrl_1640277415.pdb > /var/tmp/scwrl_1640277415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1640277415.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_852409825.pdb -s /var/tmp/to_scwrl_852409825.seq -o /var/tmp/from_scwrl_852409825.pdb > /var/tmp/scwrl_852409825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_852409825.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1398390186.pdb -s /var/tmp/to_scwrl_1398390186.seq -o /var/tmp/from_scwrl_1398390186.pdb > /var/tmp/scwrl_1398390186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1398390186.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_178237370.pdb -s /var/tmp/to_scwrl_178237370.seq -o /var/tmp/from_scwrl_178237370.pdb > /var/tmp/scwrl_178237370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_178237370.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_465809225.pdb -s /var/tmp/to_scwrl_465809225.seq -o /var/tmp/from_scwrl_465809225.pdb > /var/tmp/scwrl_465809225.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_465809225.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1977535521.pdb -s /var/tmp/to_scwrl_1977535521.seq -o /var/tmp/from_scwrl_1977535521.pdb > /var/tmp/scwrl_1977535521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1977535521.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_195366957.pdb -s /var/tmp/to_scwrl_195366957.seq -o /var/tmp/from_scwrl_195366957.pdb > /var/tmp/scwrl_195366957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_195366957.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_324473371.pdb -s /var/tmp/to_scwrl_324473371.seq -o /var/tmp/from_scwrl_324473371.pdb > /var/tmp/scwrl_324473371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_324473371.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_190281820.pdb -s /var/tmp/to_scwrl_190281820.seq -o /var/tmp/from_scwrl_190281820.pdb > /var/tmp/scwrl_190281820.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_190281820.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1447703363.pdb -s /var/tmp/to_scwrl_1447703363.seq -o /var/tmp/from_scwrl_1447703363.pdb > /var/tmp/scwrl_1447703363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1447703363.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1494761745.pdb -s /var/tmp/to_scwrl_1494761745.seq -o /var/tmp/from_scwrl_1494761745.pdb > /var/tmp/scwrl_1494761745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1494761745.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1331080215.pdb -s /var/tmp/to_scwrl_1331080215.seq -o /var/tmp/from_scwrl_1331080215.pdb > /var/tmp/scwrl_1331080215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331080215.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1744729156.pdb -s /var/tmp/to_scwrl_1744729156.seq -o /var/tmp/from_scwrl_1744729156.pdb > /var/tmp/scwrl_1744729156.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1744729156.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_842724424.pdb -s /var/tmp/to_scwrl_842724424.seq -o /var/tmp/from_scwrl_842724424.pdb > /var/tmp/scwrl_842724424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_842724424.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_471580535.pdb -s /var/tmp/to_scwrl_471580535.seq -o /var/tmp/from_scwrl_471580535.pdb > /var/tmp/scwrl_471580535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_471580535.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_36277572.pdb -s /var/tmp/to_scwrl_36277572.seq -o /var/tmp/from_scwrl_36277572.pdb > /var/tmp/scwrl_36277572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_36277572.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1923923113.pdb -s /var/tmp/to_scwrl_1923923113.seq -o /var/tmp/from_scwrl_1923923113.pdb > /var/tmp/scwrl_1923923113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1923923113.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 32.1411 sec, elapsed time= 344.723 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -124.29 shub_TS1 costs 0 real_cost = -127.307 panther2_TS1-scwrl costs 0 real_cost = -125.828 panther2_TS1 costs 0 real_cost = -98.9503 nFOLD_TS5-scwrl costs 0 real_cost = 79.4662 nFOLD_TS5 costs 0 real_cost = 149.984 nFOLD_TS4-scwrl costs 0 real_cost = 44.4429 nFOLD_TS4 costs 0 real_cost = 99.4309 nFOLD_TS3-scwrl costs 0 real_cost = 104.77 nFOLD_TS3 costs 0 real_cost = 170.689 nFOLD_TS2-scwrl costs 0 real_cost = -132.219 nFOLD_TS2 costs 0 real_cost = -59.1797 nFOLD_TS1-scwrl costs 0 real_cost = -169.521 nFOLD_TS1 costs 0 real_cost = -89.7187 mGen-3D_TS1-scwrl costs 0 real_cost = -117.605 mGen-3D_TS1 costs 0 real_cost = -44.5081 keasar-server_TS5-scwrl costs 0 real_cost = 47.301 keasar-server_TS5 costs 0 real_cost = 61.7093 keasar-server_TS4-scwrl costs 0 real_cost = -53.7387 keasar-server_TS4 costs 0 real_cost = -43.2142 keasar-server_TS3-scwrl costs 0 real_cost = -129.967 keasar-server_TS3 costs 0 real_cost = -119.111 keasar-server_TS2-scwrl costs 0 real_cost = -176.242 keasar-server_TS2 costs 0 real_cost = -175.348 karypis.srv_TS5-scwrl costs 0 real_cost = 31.6137 karypis.srv_TS5 costs 0 real_cost = 32.2935 karypis.srv_TS4-scwrl costs 0 real_cost = 61.0535 karypis.srv_TS4 costs 0 real_cost = 59.4535 karypis.srv_TS3-scwrl costs 0 real_cost = -145.379 karypis.srv_TS3 costs 0 real_cost = -144.876 karypis.srv_TS2-scwrl costs 0 real_cost = -120.061 karypis.srv_TS2 costs 0 real_cost = -127.075 karypis.srv_TS1-scwrl costs 0 real_cost = 37.6696 karypis.srv_TS1 costs 0 real_cost = 36.2526 karypis.srv.4_TS5-scwrl costs 0 real_cost = 247.031 karypis.srv.4_TS5 costs 0 real_cost = 247.031 karypis.srv.4_TS4-scwrl costs 0 real_cost = 281.507 karypis.srv.4_TS4 costs 0 real_cost = 283.975 karypis.srv.4_TS3-scwrl costs 0 real_cost = 231.172 karypis.srv.4_TS3 costs 0 real_cost = 231.172 karypis.srv.4_TS2-scwrl costs 0 real_cost = 286.7 karypis.srv.4_TS2 costs 0 real_cost = 287.211 karypis.srv.4_TS1-scwrl costs 0 real_cost = 321.521 karypis.srv.4_TS1 costs 0 real_cost = 321.521 karypis.srv.2_TS5-scwrl costs 0 real_cost = -138.659 karypis.srv.2_TS5 costs 0 real_cost = -138.659 karypis.srv.2_TS4-scwrl costs 0 real_cost = -158.59 karypis.srv.2_TS4 costs 0 real_cost = -158.59 karypis.srv.2_TS3-scwrl costs 0 real_cost = -145.897 karypis.srv.2_TS3 costs 0 real_cost = -145.897 karypis.srv.2_TS2-scwrl costs 0 real_cost = -173.392 karypis.srv.2_TS2 costs 0 real_cost = -173.392 karypis.srv.2_TS1-scwrl costs 0 real_cost = -161.007 karypis.srv.2_TS1 costs 0 real_cost = -161.007 gtg_AL5-scwrl costs 0 real_cost = 163.524 gtg_AL5 costs 0 real_cost = 258.205 gtg_AL4-scwrl costs 0 real_cost = 165.882 gtg_AL4 costs 0 real_cost = 270.779 gtg_AL3-scwrl costs 0 real_cost = 143.609 gtg_AL3 costs 0 real_cost = 248.602 gtg_AL2-scwrl costs 0 real_cost = -96.9241 gtg_AL2 costs 0 real_cost = -20.3693 gtg_AL1-scwrl costs 0 real_cost = 49.8521 gtg_AL1 costs 0 real_cost = 127.138 forecast-s_AL5-scwrl costs 0 real_cost = 132.112 forecast-s_AL5 costs 0 real_cost = 203.054 forecast-s_AL4-scwrl costs 0 real_cost = 75.9788 forecast-s_AL4 costs 0 real_cost = 161.705 forecast-s_AL3-scwrl costs 0 real_cost = 67.8499 forecast-s_AL3 costs 0 real_cost = 170.011 forecast-s_AL2-scwrl costs 0 real_cost = -137.748 forecast-s_AL2 costs 0 real_cost = -33.2663 forecast-s_AL1-scwrl costs 0 real_cost = -98.65 forecast-s_AL1 costs 0 real_cost = -13.4322 beautshotbase_TS1-scwrl costs 0 real_cost = -165.304 beautshotbase_TS1 costs 0 real_cost = -154.597 beautshot_TS1-scwrl costs 0 real_cost = -133.603 beautshot_TS1 costs 0 real_cost = -123.325 Zhang-Server_TS5-scwrl costs 0 real_cost = -155.461 Zhang-Server_TS5 costs 0 real_cost = -152.993 Zhang-Server_TS4-scwrl costs 0 real_cost = 29.9768 Zhang-Server_TS4 costs 0 real_cost = 45.7739 Zhang-Server_TS3-scwrl costs 0 real_cost = -162.435 Zhang-Server_TS3 costs 0 real_cost = -153.704 Zhang-Server_TS2-scwrl costs 0 real_cost = -162.372 Zhang-Server_TS2 costs 0 real_cost = -156.207 Zhang-Server_TS1-scwrl costs 0 real_cost = -154.065 Zhang-Server_TS1 costs 0 real_cost = -148.936 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -192.589 UNI-EID_sfst_AL5 costs 0 real_cost = -107.659 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -169.919 UNI-EID_sfst_AL4 costs 0 real_cost = -97.5433 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -144.756 UNI-EID_sfst_AL3 costs 0 real_cost = -68.1918 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -90.1673 UNI-EID_sfst_AL2 costs 0 real_cost = -10.4654 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 59.5818 UNI-EID_sfst_AL1 costs 0 real_cost = 129.701 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -149.237 UNI-EID_expm_TS1 costs 0 real_cost = -77.5034 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -173.196 UNI-EID_bnmx_TS5 costs 0 real_cost = -66.4396 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -157.376 UNI-EID_bnmx_TS4 costs 0 real_cost = -67.4791 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -114.514 UNI-EID_bnmx_TS3 costs 0 real_cost = -13.2735 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -94.9674 UNI-EID_bnmx_TS2 costs 0 real_cost = -17.064 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 50.7209 UNI-EID_bnmx_TS1 costs 0 real_cost = 125.448 SPARKS2_TS5-scwrl costs 0 real_cost = 16.9927 SPARKS2_TS5 costs 0 real_cost = 18.7174 SPARKS2_TS4-scwrl costs 0 real_cost = -10.3727 SPARKS2_TS4 costs 0 real_cost = -9.31522 SPARKS2_TS3-scwrl costs 0 real_cost = -168.426 SPARKS2_TS3 costs 0 real_cost = -168.751 SPARKS2_TS2-scwrl costs 0 real_cost = -168.662 SPARKS2_TS2 costs 0 real_cost = -162.773 SPARKS2_TS1-scwrl costs 0 real_cost = -97.8764 SPARKS2_TS1 costs 0 real_cost = -95.1862 SP4_TS5-scwrl costs 0 real_cost = -66.7989 SP4_TS5 costs 0 real_cost = -71.8179 SP4_TS4-scwrl costs 0 real_cost = -34.7256 SP4_TS4 costs 0 real_cost = -27.0245 SP4_TS3-scwrl costs 0 real_cost = -121.296 SP4_TS3 costs 0 real_cost = -119.806 SP4_TS2-scwrl costs 0 real_cost = -161.322 SP4_TS2 costs 0 real_cost = -160.243 SP4_TS1-scwrl costs 0 real_cost = -149.521 SP4_TS1 costs 0 real_cost = -141.685 SP3_TS5-scwrl costs 0 real_cost = 13.3893 SP3_TS5 costs 0 real_cost = 23.9969 SP3_TS4-scwrl costs 0 real_cost = 16.9238 SP3_TS4 costs 0 real_cost = 14.3674 SP3_TS3-scwrl costs 0 real_cost = -121.296 SP3_TS3 costs 0 real_cost = -119.806 SP3_TS2-scwrl costs 0 real_cost = -161.322 SP3_TS2 costs 0 real_cost = -160.243 SP3_TS1-scwrl costs 0 real_cost = -170.243 SP3_TS1 costs 0 real_cost = -165.671 SAM_T06_server_TS5-scwrl costs 0 real_cost = 86.1948 SAM_T06_server_TS5 costs 0 real_cost = 51.4804 SAM_T06_server_TS4-scwrl costs 0 real_cost = -92.7944 SAM_T06_server_TS4 costs 0 real_cost = -95.9927 SAM_T06_server_TS3-scwrl costs 0 real_cost = -157.285 SAM_T06_server_TS3 costs 0 real_cost = -162.136 SAM_T06_server_TS2-scwrl costs 0 real_cost = -182.266 SAM_T06_server_TS2 costs 0 real_cost = -177.488 SAM_T06_server_TS1-scwrl costs 0 real_cost = -128.955 SAM_T06_server_TS1 costs 0 real_cost = -126.628 SAM-T99_AL5-scwrl costs 0 real_cost = -161.863 SAM-T99_AL5 costs 0 real_cost = -87.7734 SAM-T99_AL4-scwrl costs 0 real_cost = -139.098 SAM-T99_AL4 costs 0 real_cost = -55.6373 SAM-T99_AL3-scwrl costs 0 real_cost = -167.317 SAM-T99_AL3 costs 0 real_cost = -66.8001 SAM-T99_AL2-scwrl costs 0 real_cost = -173.836 SAM-T99_AL2 costs 0 real_cost = -99.9766 SAM-T99_AL1-scwrl costs 0 real_cost = 49.8521 SAM-T99_AL1 costs 0 real_cost = 127.138 SAM-T02_AL5-scwrl costs 0 real_cost = -95.8743 SAM-T02_AL5 costs 0 real_cost = 2.2464 SAM-T02_AL4-scwrl costs 0 real_cost = 44.4429 SAM-T02_AL4 costs 0 real_cost = 125.704 SAM-T02_AL3-scwrl costs 0 real_cost = -92.8459 SAM-T02_AL3 costs 0 real_cost = -9.76931 SAM-T02_AL2-scwrl costs 0 real_cost = -171.841 SAM-T02_AL2 costs 0 real_cost = -84.4122 SAM-T02_AL1-scwrl costs 0 real_cost = -194.184 SAM-T02_AL1 costs 0 real_cost = -93.2468 ROKKY_TS5-scwrl costs 0 real_cost = -135.554 ROKKY_TS5 costs 0 real_cost = -127.429 ROKKY_TS4-scwrl costs 0 real_cost = -119.228 ROKKY_TS4 costs 0 real_cost = -112.984 ROKKY_TS3-scwrl costs 0 real_cost = -119.674 ROKKY_TS3 costs 0 real_cost = -116.828 ROKKY_TS2-scwrl costs 0 real_cost = -164.163 ROKKY_TS2 costs 0 real_cost = -157.842 ROKKY_TS1-scwrl costs 0 real_cost = 16.569 ROKKY_TS1 costs 0 real_cost = 24.7767 ROBETTA_TS5-scwrl costs 0 real_cost = -119.995 ROBETTA_TS5 costs 0 real_cost = -124.54 ROBETTA_TS4-scwrl costs 0 real_cost = -176.601 ROBETTA_TS4 costs 0 real_cost = -171.545 ROBETTA_TS3-scwrl costs 0 real_cost = -160.787 ROBETTA_TS3 costs 0 real_cost = -157.096 ROBETTA_TS2-scwrl costs 0 real_cost = -161.411 ROBETTA_TS2 costs 0 real_cost = -160.679 ROBETTA_TS1-scwrl costs 0 real_cost = -157.614 ROBETTA_TS1 costs 0 real_cost = -153.76 RAPTOR_TS5-scwrl costs 0 real_cost = -158.568 RAPTOR_TS5 costs 0 real_cost = -159.646 RAPTOR_TS4-scwrl costs 0 real_cost = -154.364 RAPTOR_TS4 costs 0 real_cost = -150.179 RAPTOR_TS3-scwrl costs 0 real_cost = -159.801 RAPTOR_TS3 costs 0 real_cost = -158.849 RAPTOR_TS2-scwrl costs 0 real_cost = -175.73 RAPTOR_TS2 costs 0 real_cost = -166.653 RAPTOR_TS1-scwrl costs 0 real_cost = -109.66 RAPTOR_TS1 costs 0 real_cost = -113.84 RAPTORESS_TS5-scwrl costs 0 real_cost = -131.056 RAPTORESS_TS5 costs 0 real_cost = -131.917 RAPTORESS_TS4-scwrl costs 0 real_cost = -152.916 RAPTORESS_TS4 costs 0 real_cost = -152.567 RAPTORESS_TS3-scwrl costs 0 real_cost = -143.367 RAPTORESS_TS3 costs 0 real_cost = -130.533 RAPTORESS_TS2-scwrl costs 0 real_cost = -156.977 RAPTORESS_TS2 costs 0 real_cost = -152.684 RAPTORESS_TS1-scwrl costs 0 real_cost = -53.4029 RAPTORESS_TS1 costs 0 real_cost = -59.1968 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -170.243 RAPTOR-ACE_TS5 costs 0 real_cost = -165.671 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -156.353 RAPTOR-ACE_TS4 costs 0 real_cost = -148.721 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -141.068 RAPTOR-ACE_TS3 costs 0 real_cost = -136.581 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -164.085 RAPTOR-ACE_TS2 costs 0 real_cost = -156.161 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -163.961 RAPTOR-ACE_TS1 costs 0 real_cost = -158.811 Pmodeller6_TS5-scwrl costs 0 real_cost = -119.995 Pmodeller6_TS5 costs 0 real_cost = -124.54 Pmodeller6_TS4-scwrl costs 0 real_cost = -106.833 Pmodeller6_TS4 costs 0 real_cost = -108.374 Pmodeller6_TS3-scwrl costs 0 real_cost = -61.6719 Pmodeller6_TS3 costs 0 real_cost = -73.7623 Pmodeller6_TS2-scwrl costs 0 real_cost = -213.851 Pmodeller6_TS2 costs 0 real_cost = -215.094 Pmodeller6_TS1-scwrl costs 0 real_cost = -161.411 Pmodeller6_TS1 costs 0 real_cost = -160.679 Phyre-2_TS5-scwrl costs 0 real_cost = -157.236 Phyre-2_TS5 costs 0 real_cost = -157.674 Phyre-2_TS4-scwrl costs 0 real_cost = -156.962 Phyre-2_TS4 costs 0 real_cost = -157.406 Phyre-2_TS3-scwrl costs 0 real_cost = -141.715 Phyre-2_TS3 costs 0 real_cost = -143.513 Phyre-2_TS2-scwrl costs 0 real_cost = -141.68 Phyre-2_TS2 costs 0 real_cost = -143.503 Phyre-2_TS1-scwrl costs 0 real_cost = -156.26 Phyre-2_TS1 costs 0 real_cost = -158.079 Phyre-1_TS1-scwrl costs 0 real_cost = -57.1951 Phyre-1_TS1 costs 0 real_cost = -68.804 Pcons6_TS5-scwrl costs 0 real_cost = -131.753 Pcons6_TS5 costs 0 real_cost = -130.699 Pcons6_TS4-scwrl costs 0 real_cost = -172.055 Pcons6_TS4 costs 0 real_cost = -171.368 Pcons6_TS3-scwrl costs 0 real_cost = -104.717 Pcons6_TS3 costs 0 real_cost = -106.617 Pcons6_TS2-scwrl costs 0 real_cost = -167.564 Pcons6_TS2 costs 0 real_cost = -161.048 Pcons6_TS1-scwrl costs 0 real_cost = -213.851 Pcons6_TS1 costs 0 real_cost = -215.094 PROTINFO_TS5-scwrl costs 0 real_cost = -173.005 PROTINFO_TS5 costs 0 real_cost = -171.812 PROTINFO_TS4-scwrl costs 0 real_cost = -134.174 PROTINFO_TS4 costs 0 real_cost = -138.733 PROTINFO_TS3-scwrl costs 0 real_cost = -171.959 PROTINFO_TS3 costs 0 real_cost = -174.982 PROTINFO_TS2-scwrl costs 0 real_cost = -158.986 PROTINFO_TS2 costs 0 real_cost = -167.656 PROTINFO_TS1-scwrl costs 0 real_cost = -154.972 PROTINFO_TS1 costs 0 real_cost = -156.604 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -175.685 PROTINFO-AB_TS5 costs 0 real_cost = -170.189 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -172.095 PROTINFO-AB_TS4 costs 0 real_cost = -172.543 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -173.005 PROTINFO-AB_TS3 costs 0 real_cost = -171.812 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -170.768 PROTINFO-AB_TS2 costs 0 real_cost = -169.259 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -186.278 PROTINFO-AB_TS1 costs 0 real_cost = -185.879 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -169.521 NN_PUT_lab_TS1 costs 0 real_cost = -89.7187 MetaTasser_TS5-scwrl costs 0 real_cost = -123.132 MetaTasser_TS5 costs 0 real_cost = -114.608 MetaTasser_TS4-scwrl costs 0 real_cost = -31.3656 MetaTasser_TS4 costs 0 real_cost = -26.1393 MetaTasser_TS3-scwrl costs 0 real_cost = -120.022 MetaTasser_TS3 costs 0 real_cost = -111.522 MetaTasser_TS2-scwrl costs 0 real_cost = -117.461 MetaTasser_TS2 costs 0 real_cost = -118.364 MetaTasser_TS1-scwrl costs 0 real_cost = -128.125 MetaTasser_TS1 costs 0 real_cost = -111.768 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 44.1505 Ma-OPUS-server_TS5 costs 0 real_cost = 46.0023 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -0.389746 Ma-OPUS-server_TS4 costs 0 real_cost = 9.00865 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -119.009 Ma-OPUS-server_TS3 costs 0 real_cost = -119.442 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -155.011 Ma-OPUS-server_TS2 costs 0 real_cost = -150.78 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -180.214 Ma-OPUS-server_TS1 costs 0 real_cost = -170.309 LOOPP_TS5-scwrl costs 0 real_cost = -123.51 LOOPP_TS5 costs 0 real_cost = -117.24 LOOPP_TS4-scwrl costs 0 real_cost = -51.9979 LOOPP_TS4 costs 0 real_cost = -55.1597 LOOPP_TS3-scwrl costs 0 real_cost = 90.2824 LOOPP_TS3 costs 0 real_cost = 86.0711 LOOPP_TS2-scwrl costs 0 real_cost = -102.157 LOOPP_TS2 costs 0 real_cost = -99.7183 LOOPP_TS1-scwrl costs 0 real_cost = -158.416 LOOPP_TS1 costs 0 real_cost = -154.848 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -83.0427 Huber-Torda-Server_TS5 costs 0 real_cost = -21.1164 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 51.1836 Huber-Torda-Server_TS4 costs 0 real_cost = 102.397 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -149.829 Huber-Torda-Server_TS3 costs 0 real_cost = -75.2212 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -92.7837 Huber-Torda-Server_TS2 costs 0 real_cost = -39.3112 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -104.488 Huber-Torda-Server_TS1 costs 0 real_cost = -43.8567 HHpred3_TS1-scwrl costs 0 real_cost = 30.8642 HHpred3_TS1 costs 0 real_cost = 36.7406 HHpred2_TS1-scwrl costs 0 real_cost = 30.8642 HHpred2_TS1 costs 0 real_cost = 36.7406 HHpred1_TS1-scwrl costs 0 real_cost = -170.447 HHpred1_TS1 costs 0 real_cost = -166.312 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -105.978 GeneSilicoMetaServer_TS5 costs 0 real_cost = -104.148 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -129.587 GeneSilicoMetaServer_TS4 costs 0 real_cost = -119.618 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -156.697 GeneSilicoMetaServer_TS3 costs 0 real_cost = -157.482 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -161.906 GeneSilicoMetaServer_TS2 costs 0 real_cost = -163.086 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -137.957 GeneSilicoMetaServer_TS1 costs 0 real_cost = -141.619 FUNCTION_TS5-scwrl costs 0 real_cost = -167.79 FUNCTION_TS5 costs 0 real_cost = -153.62 FUNCTION_TS4-scwrl costs 0 real_cost = -93.7808 FUNCTION_TS4 costs 0 real_cost = -83.3375 FUNCTION_TS3-scwrl costs 0 real_cost = -155.174 FUNCTION_TS3 costs 0 real_cost = -154.519 FUNCTION_TS2-scwrl costs 0 real_cost = -180.715 FUNCTION_TS2 costs 0 real_cost = -167.98 FUNCTION_TS1-scwrl costs 0 real_cost = -150.842 FUNCTION_TS1 costs 0 real_cost = -145.041 FUGUE_AL5-scwrl costs 0 real_cost = 44.8039 FUGUE_AL5 costs 0 real_cost = 127.14 FUGUE_AL4-scwrl costs 0 real_cost = 46.6592 FUGUE_AL4 costs 0 real_cost = 141.667 FUGUE_AL3-scwrl costs 0 real_cost = 209.053 FUGUE_AL3 costs 0 real_cost = 209.053 FUGUE_AL2-scwrl costs 0 real_cost = 70.7172 FUGUE_AL2 costs 0 real_cost = 144.921 FUGUE_AL1-scwrl costs 0 real_cost = -119.762 FUGUE_AL1 costs 0 real_cost = -21.8584 FUGMOD_TS5-scwrl costs 0 real_cost = 10.2936 FUGMOD_TS5 costs 0 real_cost = 4.502 FUGMOD_TS4-scwrl costs 0 real_cost = 39.7714 FUGMOD_TS4 costs 0 real_cost = 38.7544 FUGMOD_TS3-scwrl costs 0 real_cost = 94.7598 FUGMOD_TS3 costs 0 real_cost = 99.6642 FUGMOD_TS2-scwrl costs 0 real_cost = 25.3745 FUGMOD_TS2 costs 0 real_cost = 33.56 FUGMOD_TS1-scwrl costs 0 real_cost = -146.778 FUGMOD_TS1 costs 0 real_cost = -148.433 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 302.056 FPSOLVER-SERVER_TS5 costs 0 real_cost = 305.806 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 302.716 FPSOLVER-SERVER_TS4 costs 0 real_cost = 306.331 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 295.879 FPSOLVER-SERVER_TS3 costs 0 real_cost = 301.07 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 300.328 FPSOLVER-SERVER_TS2 costs 0 real_cost = 304.524 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 282.442 FPSOLVER-SERVER_TS1 costs 0 real_cost = 286.159 FORTE2_AL5-scwrl costs 0 real_cost = 240.804 FORTE2_AL5 costs 0 real_cost = 240.804 FORTE2_AL4-scwrl costs 0 real_cost = 90.1703 FORTE2_AL4 costs 0 real_cost = 194.209 FORTE2_AL3-scwrl costs 0 real_cost = 184.41 FORTE2_AL3 costs 0 real_cost = 276.42 FORTE2_AL2-scwrl costs 0 real_cost = 124.796 FORTE2_AL2 costs 0 real_cost = 222.262 FORTE2_AL1-scwrl costs 0 real_cost = -105.073 FORTE2_AL1 costs 0 real_cost = -21.3823 FORTE1_AL5-scwrl costs 0 real_cost = 79.094 FORTE1_AL5 costs 0 real_cost = 174.269 FORTE1_AL4-scwrl costs 0 real_cost = 184.812 FORTE1_AL3-scwrl costs 0 real_cost = 95.7436 FORTE1_AL3 costs 0 real_cost = 199.356 FORTE1_AL2-scwrl costs 0 real_cost = 186.839 FORTE1_AL2 costs 0 real_cost = 275.272 FORTE1_AL1-scwrl costs 0 real_cost = -105.073 FORTE1_AL1 costs 0 real_cost = -21.3823 FOLDpro_TS5-scwrl costs 0 real_cost = 179.311 FOLDpro_TS5 costs 0 real_cost = 188.525 FOLDpro_TS4-scwrl costs 0 real_cost = 108.04 FOLDpro_TS4 costs 0 real_cost = 122.817 FOLDpro_TS3-scwrl costs 0 real_cost = 173.944 FOLDpro_TS3 costs 0 real_cost = 178.139 FOLDpro_TS2-scwrl costs 0 real_cost = 206.961 FOLDpro_TS2 costs 0 real_cost = 219.082 FOLDpro_TS1-scwrl costs 0 real_cost = -181.91 FOLDpro_TS1 costs 0 real_cost = -180.509 FAMS_TS5-scwrl costs 0 real_cost = -178.969 FAMS_TS5 costs 0 real_cost = -179.115 FAMS_TS4-scwrl costs 0 real_cost = -186.905 FAMS_TS4 costs 0 real_cost = -182.182 FAMS_TS3-scwrl costs 0 real_cost = -177.441 FAMS_TS3 costs 0 real_cost = -180.041 FAMS_TS2-scwrl costs 0 real_cost = -172.09 FAMS_TS2 costs 0 real_cost = -160.596 FAMS_TS1-scwrl costs 0 real_cost = -164.38 FAMS_TS1 costs 0 real_cost = -153.595 FAMSD_TS5-scwrl costs 0 real_cost = -98.8411 FAMSD_TS5 costs 0 real_cost = -94.2097 FAMSD_TS4-scwrl costs 0 real_cost = -178.969 FAMSD_TS4 costs 0 real_cost = -179.115 FAMSD_TS3-scwrl costs 0 real_cost = -94.0786 FAMSD_TS3 costs 0 real_cost = -85.9023 FAMSD_TS2-scwrl costs 0 real_cost = -151.812 FAMSD_TS2 costs 0 real_cost = -157.081 FAMSD_TS1-scwrl costs 0 real_cost = -112.67 FAMSD_TS1 costs 0 real_cost = -109.559 Distill_TS5-scwrl costs 0 real_cost = 320.638 Distill_TS4-scwrl costs 0 real_cost = 322.042 Distill_TS3-scwrl costs 0 real_cost = 325.617 Distill_TS2-scwrl costs 0 real_cost = 313.776 Distill_TS1-scwrl costs 0 real_cost = 307.517 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 101.893 CaspIta-FOX_TS5 costs 0 real_cost = 103.675 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 102.225 CaspIta-FOX_TS4 costs 0 real_cost = 104.098 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 44.4429 CaspIta-FOX_TS3 costs 0 real_cost = 42.58 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -93.6544 CaspIta-FOX_TS2 costs 0 real_cost = -96.6916 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -57.5376 CaspIta-FOX_TS1 costs 0 real_cost = -57.7223 CPHmodels_TS1-scwrl costs 0 real_cost = -148.479 CPHmodels_TS1 costs 0 real_cost = -160.947 CIRCLE_TS5-scwrl costs 0 real_cost = -186.905 CIRCLE_TS5 costs 0 real_cost = -182.182 CIRCLE_TS4-scwrl costs 0 real_cost = -183.863 CIRCLE_TS4 costs 0 real_cost = -178.881 CIRCLE_TS3-scwrl costs 0 real_cost = -153.243 CIRCLE_TS3 costs 0 real_cost = -158.853 CIRCLE_TS2-scwrl costs 0 real_cost = -177.441 CIRCLE_TS2 costs 0 real_cost = -180.041 CIRCLE_TS1-scwrl costs 0 real_cost = -172.09 CIRCLE_TS1 costs 0 real_cost = -160.596 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -133.044 Bilab-ENABLE_TS5 costs 0 real_cost = -133.044 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -152.319 Bilab-ENABLE_TS4 costs 0 real_cost = -152.319 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -150.861 Bilab-ENABLE_TS3 costs 0 real_cost = -150.861 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -141.865 Bilab-ENABLE_TS2 costs 0 real_cost = -141.865 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -166.201 Bilab-ENABLE_TS1 costs 0 real_cost = -166.201 BayesHH_TS1-scwrl costs 0 real_cost = 25.259 BayesHH_TS1 costs 0 real_cost = 37.3832 ABIpro_TS5-scwrl costs 0 real_cost = 179.173 ABIpro_TS5 costs 0 real_cost = 179.173 ABIpro_TS4-scwrl costs 0 real_cost = 178.948 ABIpro_TS4 costs 0 real_cost = 181.712 ABIpro_TS3-scwrl costs 0 real_cost = 235.368 ABIpro_TS3 costs 0 real_cost = 235.368 ABIpro_TS2-scwrl costs 0 real_cost = 217.414 ABIpro_TS2 costs 0 real_cost = 217.414 ABIpro_TS1-scwrl costs 0 real_cost = 194.641 ABIpro_TS1 costs 0 real_cost = 191.337 3Dpro_TS5-scwrl costs 0 real_cost = 234.812 3Dpro_TS5 costs 0 real_cost = 246.681 3Dpro_TS4-scwrl costs 0 real_cost = 124.946 3Dpro_TS4 costs 0 real_cost = 126.49 3Dpro_TS3-scwrl costs 0 real_cost = 131.677 3Dpro_TS3 costs 0 real_cost = 130.041 3Dpro_TS2-scwrl costs 0 real_cost = 139.625 3Dpro_TS2 costs 0 real_cost = 151.067 3Dpro_TS1-scwrl costs 0 real_cost = -185.381 3Dpro_TS1 costs 0 real_cost = -190.345 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 43.4428 3D-JIGSAW_TS5 costs 0 real_cost = 51.6415 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -139.867 3D-JIGSAW_TS4 costs 0 real_cost = -143.38 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -155.728 3D-JIGSAW_TS3 costs 0 real_cost = -157.034 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -143.158 3D-JIGSAW_TS2 costs 0 real_cost = -142.719 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 55.0341 3D-JIGSAW_TS1 costs 0 real_cost = 71.7969 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -139.412 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -155.145 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -26.4252 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -37.4895 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -107.095 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -119.54 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -153.581 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -167.806 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -160.772 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -176.716 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -119.094 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -120.825 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -120.296 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -121.949 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -153.552 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -154.36 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -200.822 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -201.807 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -207.74 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -210.981 T0317.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -177.038 T0317.try2-opt2.pdb.gz costs 0 real_cost = -180.226 T0317.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -182.894 T0317.try2-opt1.pdb.gz costs 0 real_cost = -180.571 T0317.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -183.51 T0317.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -183.484 T0317.try1-opt2.pdb.gz costs 0 real_cost = -181.031 T0317.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -185.212 T0317.try1-opt1.pdb.gz costs 0 real_cost = -176.262 T0317.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -177.922 ../model5.ts-submitted costs 0 real_cost = -142.229 ../model4.ts-submitted costs 0 real_cost = -163.826 ../model3.ts-submitted costs 0 real_cost = -182.386 ../model2.ts-submitted costs 0 real_cost = -180.104 ../model1.ts-submitted costs 0 real_cost = -180.235 align5 costs 0 real_cost = 33.4518 align4 costs 0 real_cost = 13.6877 align3 costs 0 real_cost = -142.429 align2 costs 0 real_cost = -167.079 align1 costs 0 real_cost = -182.763 T0317.try1-opt2.pdb costs 0 real_cost = -181.039 model5-scwrl costs 0 real_cost = -142.742 model5.ts-submitted costs 0 real_cost = -142.229 model4-scwrl costs 0 real_cost = -158.264 model4.ts-submitted costs 0 real_cost = -163.826 model3-scwrl costs 0 real_cost = -185.969 model3.ts-submitted costs 0 real_cost = -182.386 model2-scwrl costs 0 real_cost = -184.279 model2.ts-submitted costs 0 real_cost = -180.104 model1-scwrl costs 0 real_cost = -182.508 model1.ts-submitted costs 0 real_cost = -180.233 2hcmA costs 0 real_cost = -885.6 # command:CPU_time= 582.224 sec, elapsed time= 895.181 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty rm -f decoys/evaluate_1.rdb sed -e s/XXX0000/T0317/ -e s/START_COL/1/ \ -e s/REAL_PDB/2hcmA/ \ -e s/_domain/_1/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175309934 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.84111 sec, elapsed time= 5.88098 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.9131 sec, elapsed time= 5.97143 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0317 numbered 1 through 163 Created new target T0317 from T0317.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0317_1.real.pdb looking for model 1 Skipped atom 315, because occupancy 5.0000000e-01 <= existing 0.500 in T0317_1.real.pdb Skipped atom 319, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 321, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 323, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 325, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 327, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 329, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 331, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 530, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 534, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 536, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 538, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 665, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 669, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 671, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 944, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 948, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 950, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 952, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 954, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 956, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1122, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1126, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1128, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1130, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1132, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1134, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1137, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1141, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1143, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb Skipped atom 1145, because occupancy 0.500 <= existing 0.500 in T0317_1.real.pdb # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.11377 sec, elapsed time= 8.18717 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 158 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -87.0805 # GDT_score(maxd=8,maxw=2.9)= -89.5451 # GDT_score(maxd=8,maxw=3.2)= -87.3212 # GDT_score(maxd=8,maxw=3.5)= -84.4783 # GDT_score(maxd=10,maxw=3.8)= -85.9004 # GDT_score(maxd=10,maxw=4)= -83.8844 # GDT_score(maxd=10,maxw=4.2)= -81.7875 # GDT_score(maxd=12,maxw=4.3)= -84.4935 # GDT_score(maxd=12,maxw=4.5)= -82.4584 # GDT_score(maxd=12,maxw=4.7)= -80.3109 # GDT_score(maxd=14,maxw=5.2)= -78.2881 # GDT_score(maxd=14,maxw=5.5)= -75.1965 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1725.000 rmsd (weighted)= 3.030 (unweighted)= 17.338 superimposing iter= 1 total_weight= 6594.207 rmsd (weighted)= 1.039 (unweighted)= 17.332 superimposing iter= 2 total_weight= 2638.505 rmsd (weighted)= 0.656 (unweighted)= 17.328 superimposing iter= 3 total_weight= 1594.813 rmsd (weighted)= 0.543 (unweighted)= 17.321 superimposing iter= 4 total_weight= 1314.430 rmsd (weighted)= 0.497 (unweighted)= 17.317 superimposing iter= 5 total_weight= 1210.573 rmsd (weighted)= 0.476 (unweighted)= 17.314 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1275905750.pdb -s /var/tmp/to_scwrl_1275905750.seq -o /var/tmp/from_scwrl_1275905750.pdb > /var/tmp/scwrl_1275905750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1275905750.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -86.9128 # GDT_score(maxd=8,maxw=2.9)= -89.8349 # GDT_score(maxd=8,maxw=3.2)= -87.5196 # GDT_score(maxd=8,maxw=3.5)= -84.6303 # GDT_score(maxd=10,maxw=3.8)= -86.065 # GDT_score(maxd=10,maxw=4)= -83.9998 # GDT_score(maxd=10,maxw=4.2)= -81.8318 # GDT_score(maxd=12,maxw=4.3)= -84.5967 # GDT_score(maxd=12,maxw=4.5)= -82.4968 # GDT_score(maxd=12,maxw=4.7)= -80.2974 # GDT_score(maxd=14,maxw=5.2)= -78.1257 # GDT_score(maxd=14,maxw=5.5)= -74.9185 # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1414874572.pdb -s /var/tmp/to_scwrl_1414874572.seq -o /var/tmp/from_scwrl_1414874572.pdb > /var/tmp/scwrl_1414874572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414874572.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.926174 # GDT_score = -81.7114 # GDT_score(maxd=8,maxw=2.9)= -85.2009 # GDT_score(maxd=8,maxw=3.2)= -82.5489 # GDT_score(maxd=8,maxw=3.5)= -79.151 # GDT_score(maxd=10,maxw=3.8)= -80.534 # GDT_score(maxd=10,maxw=4)= -78.2747 # GDT_score(maxd=10,maxw=4.2)= -75.9627 # GDT_score(maxd=12,maxw=4.3)= -78.7556 # GDT_score(maxd=12,maxw=4.5)= -76.523 # GDT_score(maxd=12,maxw=4.7)= -74.2526 # GDT_score(maxd=14,maxw=5.2)= -72.0301 # GDT_score(maxd=14,maxw=5.5)= -68.8612 # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_161542231.pdb -s /var/tmp/to_scwrl_161542231.seq -o /var/tmp/from_scwrl_161542231.pdb > /var/tmp/scwrl_161542231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_161542231.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.919463 # GDT_score = -81.2081 # GDT_score(maxd=8,maxw=2.9)= -84.3324 # GDT_score(maxd=8,maxw=3.2)= -82.074 # GDT_score(maxd=8,maxw=3.5)= -79.1732 # GDT_score(maxd=10,maxw=3.8)= -80.4613 # GDT_score(maxd=10,maxw=4)= -78.4634 # GDT_score(maxd=10,maxw=4.2)= -76.3422 # GDT_score(maxd=12,maxw=4.3)= -78.9294 # GDT_score(maxd=12,maxw=4.5)= -76.8717 # GDT_score(maxd=12,maxw=4.7)= -74.7406 # GDT_score(maxd=14,maxw=5.2)= -72.6695 # GDT_score(maxd=14,maxw=5.5)= -69.6416 # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_946478012.pdb -s /var/tmp/to_scwrl_946478012.seq -o /var/tmp/from_scwrl_946478012.pdb > /var/tmp/scwrl_946478012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_946478012.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.979866 # GDT_score = -82.5503 # GDT_score(maxd=8,maxw=2.9)= -86.0546 # GDT_score(maxd=8,maxw=3.2)= -83.1936 # GDT_score(maxd=8,maxw=3.5)= -79.562 # GDT_score(maxd=10,maxw=3.8)= -81.1263 # GDT_score(maxd=10,maxw=4)= -78.8014 # GDT_score(maxd=10,maxw=4.2)= -76.4287 # GDT_score(maxd=12,maxw=4.3)= -79.4944 # GDT_score(maxd=12,maxw=4.5)= -77.198 # GDT_score(maxd=12,maxw=4.7)= -74.8525 # GDT_score(maxd=14,maxw=5.2)= -72.7899 # GDT_score(maxd=14,maxw=5.5)= -69.566 # command:# request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1414063895.pdb -s /var/tmp/to_scwrl_1414063895.seq -o /var/tmp/from_scwrl_1414063895.pdb > /var/tmp/scwrl_1414063895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414063895.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0317.try1-opt2.pdb looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -86.9128 # GDT_score(maxd=8,maxw=2.9)= -89.8589 # GDT_score(maxd=8,maxw=3.2)= -87.539 # GDT_score(maxd=8,maxw=3.5)= -84.6493 # GDT_score(maxd=10,maxw=3.8)= -86.0825 # GDT_score(maxd=10,maxw=4)= -84.0149 # GDT_score(maxd=10,maxw=4.2)= -81.8405 # GDT_score(maxd=12,maxw=4.3)= -84.6107 # GDT_score(maxd=12,maxw=4.5)= -82.4978 # GDT_score(maxd=12,maxw=4.7)= -80.2926 # GDT_score(maxd=14,maxw=5.2)= -78.1208 # GDT_score(maxd=14,maxw=5.5)= -74.9078 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1725.000 rmsd (weighted)= 3.004 (unweighted)= 17.208 superimposing iter= 1 total_weight= 6648.924 rmsd (weighted)= 1.035 (unweighted)= 17.204 superimposing iter= 2 total_weight= 2648.027 rmsd (weighted)= 0.657 (unweighted)= 17.199 superimposing iter= 3 total_weight= 1524.895 rmsd (weighted)= 0.559 (unweighted)= 17.194 superimposing iter= 4 total_weight= 1272.907 rmsd (weighted)= 0.523 (unweighted)= 17.191 superimposing iter= 5 total_weight= 1187.525 rmsd (weighted)= 0.506 (unweighted)= 17.189 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0317)P48.C and (T0317)G49.C only 0.000 apart, marking (T0317)G49.C as missing WARNING: atoms too close: (T0317)G49.N and (T0317)P50.N only 0.000 apart, marking (T0317)G49.N as missing WARNING: atoms too close: (T0317)G49.CA and (T0317)P50.CA only 0.000 apart, marking (T0317)G49.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.932886 # GDT_score = -82.047 # GDT_score(maxd=8,maxw=2.9)= -85.4821 # GDT_score(maxd=8,maxw=3.2)= -82.7957 # GDT_score(maxd=8,maxw=3.5)= -79.4016 # GDT_score(maxd=10,maxw=3.8)= -80.8227 # GDT_score(maxd=10,maxw=4)= -78.5439 # GDT_score(maxd=10,maxw=4.2)= -76.2193 # GDT_score(maxd=12,maxw=4.3)= -79.047 # GDT_score(maxd=12,maxw=4.5)= -76.8067 # GDT_score(maxd=12,maxw=4.7)= -74.5308 # GDT_score(maxd=14,maxw=5.2)= -72.3117 # GDT_score(maxd=14,maxw=5.5)= -69.1269 # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0317)R45.C and (T0317)Q46.C only 0.000 apart, marking (T0317)Q46.C as missing WARNING: atoms too close: (T0317)Q46.N and (T0317)Q47.N only 0.000 apart, marking (T0317)Q46.N as missing WARNING: atoms too close: (T0317)Q46.CA and (T0317)Q47.CA only 0.000 apart, marking (T0317)Q46.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.926174 # GDT_score = -81.8792 # GDT_score(maxd=8,maxw=2.9)= -85.0161 # GDT_score(maxd=8,maxw=3.2)= -82.6842 # GDT_score(maxd=8,maxw=3.5)= -79.7332 # GDT_score(maxd=10,maxw=3.8)= -81.0338 # GDT_score(maxd=10,maxw=4)= -79.0072 # GDT_score(maxd=10,maxw=4.2)= -76.8702 # GDT_score(maxd=12,maxw=4.3)= -79.473 # GDT_score(maxd=12,maxw=4.5)= -77.4128 # GDT_score(maxd=12,maxw=4.7)= -75.3248 # GDT_score(maxd=14,maxw=5.2)= -73.2335 # GDT_score(maxd=14,maxw=5.5)= -70.1757 # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0317)P130.C and (T0317)V131.C only 0.000 apart, marking (T0317)V131.C as missing WARNING: atoms too close: (T0317)V131.N and (T0317)A132.N only 0.000 apart, marking (T0317)V131.N as missing WARNING: atoms too close: (T0317)V131.CA and (T0317)A132.CA only 0.000 apart, marking (T0317)V131.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0317)L70.C and (T0317)L71.C only 0.000 apart, marking (T0317)L71.C as missing WARNING: atoms too close: (T0317)L71.N and (T0317)T72.N only 0.000 apart, marking (T0317)L71.N as missing WARNING: atoms too close: (T0317)L71.CA and (T0317)T72.CA only 0.000 apart, marking (T0317)L71.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0317.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0317)A23.C and (T0317)A25.C only 0.000 apart, marking (T0317)A25.C as missing WARNING: atoms too close: (T0317)R24.N and (T0317)A26.N only 0.000 apart, marking (T0317)R24.N as missing WARNING: atoms too close: (T0317)R24.CA and (T0317)A26.CA only 0.000 apart, marking (T0317)R24.CA as missing WARNING: atoms too close: (T0317)L70.C and (T0317)L71.C only 0.000 apart, marking (T0317)L71.C as missing WARNING: atoms too close: (T0317)L71.N and (T0317)T72.N only 0.000 apart, marking (T0317)L71.N as missing WARNING: atoms too close: (T0317)L71.CA and (T0317)T72.CA only 0.000 apart, marking (T0317)L71.CA as missing WARNING: atoms too close: (T0317)L136.C and (T0317)G137.C only 0.000 apart, marking (T0317)G137.C as missing WARNING: atoms too close: (T0317)G137.N and (T0317)F138.N only 0.000 apart, marking (T0317)G137.N as missing WARNING: atoms too close: (T0317)G137.CA and (T0317)F138.CA only 0.000 apart, marking (T0317)G137.CA as missing # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0317.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0317.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_330545175.pdb -s /var/tmp/to_scwrl_330545175.seq -o /var/tmp/from_scwrl_330545175.pdb > /var/tmp/scwrl_330545175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_330545175.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2001608503.pdb -s /var/tmp/to_scwrl_2001608503.seq -o /var/tmp/from_scwrl_2001608503.pdb > /var/tmp/scwrl_2001608503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2001608503.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1539595349.pdb -s /var/tmp/to_scwrl_1539595349.seq -o /var/tmp/from_scwrl_1539595349.pdb > /var/tmp/scwrl_1539595349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1539595349.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_588748962.pdb -s /var/tmp/to_scwrl_588748962.seq -o /var/tmp/from_scwrl_588748962.pdb > /var/tmp/scwrl_588748962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_588748962.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1200056035.pdb -s /var/tmp/to_scwrl_1200056035.seq -o /var/tmp/from_scwrl_1200056035.pdb > /var/tmp/scwrl_1200056035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200056035.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1127519042.pdb -s /var/tmp/to_scwrl_1127519042.seq -o /var/tmp/from_scwrl_1127519042.pdb > /var/tmp/scwrl_1127519042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1127519042.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_613460742.pdb -s /var/tmp/to_scwrl_613460742.seq -o /var/tmp/from_scwrl_613460742.pdb > /var/tmp/scwrl_613460742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613460742.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_529547184.pdb -s /var/tmp/to_scwrl_529547184.seq -o /var/tmp/from_scwrl_529547184.pdb > /var/tmp/scwrl_529547184.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_529547184.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1888875240.pdb -s /var/tmp/to_scwrl_1888875240.seq -o /var/tmp/from_scwrl_1888875240.pdb > /var/tmp/scwrl_1888875240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888875240.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2040515951.pdb -s /var/tmp/to_scwrl_2040515951.seq -o /var/tmp/from_scwrl_2040515951.pdb > /var/tmp/scwrl_2040515951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2040515951.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_898434560.pdb -s /var/tmp/to_scwrl_898434560.seq -o /var/tmp/from_scwrl_898434560.pdb > /var/tmp/scwrl_898434560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_898434560.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1045921924.pdb -s /var/tmp/to_scwrl_1045921924.seq -o /var/tmp/from_scwrl_1045921924.pdb > /var/tmp/scwrl_1045921924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1045921924.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_821767112.pdb -s /var/tmp/to_scwrl_821767112.seq -o /var/tmp/from_scwrl_821767112.pdb > /var/tmp/scwrl_821767112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821767112.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_708256247.pdb -s /var/tmp/to_scwrl_708256247.seq -o /var/tmp/from_scwrl_708256247.pdb > /var/tmp/scwrl_708256247.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708256247.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_387863424.pdb -s /var/tmp/to_scwrl_387863424.seq -o /var/tmp/from_scwrl_387863424.pdb > /var/tmp/scwrl_387863424.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_387863424.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1493078807.pdb -s /var/tmp/to_scwrl_1493078807.seq -o /var/tmp/from_scwrl_1493078807.pdb > /var/tmp/scwrl_1493078807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493078807.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2022547277.pdb -s /var/tmp/to_scwrl_2022547277.seq -o /var/tmp/from_scwrl_2022547277.pdb > /var/tmp/scwrl_2022547277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2022547277.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1581131740.pdb -s /var/tmp/to_scwrl_1581131740.seq -o /var/tmp/from_scwrl_1581131740.pdb > /var/tmp/scwrl_1581131740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1581131740.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_433401433.pdb -s /var/tmp/to_scwrl_433401433.seq -o /var/tmp/from_scwrl_433401433.pdb > /var/tmp/scwrl_433401433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_433401433.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_530933382.pdb -s /var/tmp/to_scwrl_530933382.seq -o /var/tmp/from_scwrl_530933382.pdb > /var/tmp/scwrl_530933382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530933382.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_166099580.pdb -s /var/tmp/to_scwrl_166099580.seq -o /var/tmp/from_scwrl_166099580.pdb > /var/tmp/scwrl_166099580.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_166099580.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2089459248.pdb -s /var/tmp/to_scwrl_2089459248.seq -o /var/tmp/from_scwrl_2089459248.pdb > /var/tmp/scwrl_2089459248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2089459248.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_768265428.pdb -s /var/tmp/to_scwrl_768265428.seq -o /var/tmp/from_scwrl_768265428.pdb > /var/tmp/scwrl_768265428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_768265428.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 139 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1571646972.pdb -s /var/tmp/to_scwrl_1571646972.seq -o /var/tmp/from_scwrl_1571646972.pdb > /var/tmp/scwrl_1571646972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1571646972.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_280632576.pdb -s /var/tmp/to_scwrl_280632576.seq -o /var/tmp/from_scwrl_280632576.pdb > /var/tmp/scwrl_280632576.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_280632576.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_961359046.pdb -s /var/tmp/to_scwrl_961359046.seq -o /var/tmp/from_scwrl_961359046.pdb > /var/tmp/scwrl_961359046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_961359046.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_700069076.pdb -s /var/tmp/to_scwrl_700069076.seq -o /var/tmp/from_scwrl_700069076.pdb > /var/tmp/scwrl_700069076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_700069076.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1695507149.pdb -s /var/tmp/to_scwrl_1695507149.seq -o /var/tmp/from_scwrl_1695507149.pdb > /var/tmp/scwrl_1695507149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1695507149.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1122901276.pdb -s /var/tmp/to_scwrl_1122901276.seq -o /var/tmp/from_scwrl_1122901276.pdb > /var/tmp/scwrl_1122901276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1122901276.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1646547087.pdb -s /var/tmp/to_scwrl_1646547087.seq -o /var/tmp/from_scwrl_1646547087.pdb > /var/tmp/scwrl_1646547087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1646547087.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_962087398.pdb -s /var/tmp/to_scwrl_962087398.seq -o /var/tmp/from_scwrl_962087398.pdb > /var/tmp/scwrl_962087398.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_962087398.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1453446451.pdb -s /var/tmp/to_scwrl_1453446451.seq -o /var/tmp/from_scwrl_1453446451.pdb > /var/tmp/scwrl_1453446451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1453446451.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1500671943.pdb -s /var/tmp/to_scwrl_1500671943.seq -o /var/tmp/from_scwrl_1500671943.pdb > /var/tmp/scwrl_1500671943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500671943.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_354199100.pdb -s /var/tmp/to_scwrl_354199100.seq -o /var/tmp/from_scwrl_354199100.pdb > /var/tmp/scwrl_354199100.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_354199100.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2042195413.pdb -s /var/tmp/to_scwrl_2042195413.seq -o /var/tmp/from_scwrl_2042195413.pdb > /var/tmp/scwrl_2042195413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2042195413.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_553244332.pdb -s /var/tmp/to_scwrl_553244332.seq -o /var/tmp/from_scwrl_553244332.pdb > /var/tmp/scwrl_553244332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_553244332.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1481718142.pdb -s /var/tmp/to_scwrl_1481718142.seq -o /var/tmp/from_scwrl_1481718142.pdb > /var/tmp/scwrl_1481718142.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1481718142.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_508172508.pdb -s /var/tmp/to_scwrl_508172508.seq -o /var/tmp/from_scwrl_508172508.pdb > /var/tmp/scwrl_508172508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_508172508.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1082791516.pdb -s /var/tmp/to_scwrl_1082791516.seq -o /var/tmp/from_scwrl_1082791516.pdb > /var/tmp/scwrl_1082791516.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1082791516.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1223109735.pdb -s /var/tmp/to_scwrl_1223109735.seq -o /var/tmp/from_scwrl_1223109735.pdb > /var/tmp/scwrl_1223109735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1223109735.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_401204812.pdb -s /var/tmp/to_scwrl_401204812.seq -o /var/tmp/from_scwrl_401204812.pdb > /var/tmp/scwrl_401204812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_401204812.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1981226076.pdb -s /var/tmp/to_scwrl_1981226076.seq -o /var/tmp/from_scwrl_1981226076.pdb > /var/tmp/scwrl_1981226076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1981226076.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_121548012.pdb -s /var/tmp/to_scwrl_121548012.seq -o /var/tmp/from_scwrl_121548012.pdb > /var/tmp/scwrl_121548012.log Error: Couldn't open file /var/tmp/from_scwrl_121548012.pdb or /var/tmp/from_scwrl_121548012.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_121548012_b.pdb or decoys//var/tmp/from_scwrl_121548012_b.pdb.gz for input Trying /var/tmp/from_scwrl_121548012_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_121548012_b.pdb or /var/tmp/from_scwrl_121548012_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_121548012_a.pdb or decoys//var/tmp/from_scwrl_121548012_a.pdb.gz for input Trying /var/tmp/from_scwrl_121548012_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_121548012_a.pdb or /var/tmp/from_scwrl_121548012_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_121548012.pdb or /var/tmp/from_scwrl_121548012_b.pdb or /var/tmp/from_scwrl_121548012_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1222971923.pdb -s /var/tmp/to_scwrl_1222971923.seq -o /var/tmp/from_scwrl_1222971923.pdb > /var/tmp/scwrl_1222971923.log Error: Couldn't open file /var/tmp/from_scwrl_1222971923.pdb or /var/tmp/from_scwrl_1222971923.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1222971923_b.pdb or decoys//var/tmp/from_scwrl_1222971923_b.pdb.gz for input Trying /var/tmp/from_scwrl_1222971923_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1222971923_b.pdb or /var/tmp/from_scwrl_1222971923_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1222971923_a.pdb or decoys//var/tmp/from_scwrl_1222971923_a.pdb.gz for input Trying /var/tmp/from_scwrl_1222971923_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1222971923_a.pdb or /var/tmp/from_scwrl_1222971923_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1222971923.pdb or /var/tmp/from_scwrl_1222971923_b.pdb or /var/tmp/from_scwrl_1222971923_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_541998676.pdb -s /var/tmp/to_scwrl_541998676.seq -o /var/tmp/from_scwrl_541998676.pdb > /var/tmp/scwrl_541998676.log Error: Couldn't open file /var/tmp/from_scwrl_541998676.pdb or /var/tmp/from_scwrl_541998676.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_541998676_b.pdb or decoys//var/tmp/from_scwrl_541998676_b.pdb.gz for input Trying /var/tmp/from_scwrl_541998676_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_541998676_b.pdb or /var/tmp/from_scwrl_541998676_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_541998676_a.pdb or decoys//var/tmp/from_scwrl_541998676_a.pdb.gz for input Trying /var/tmp/from_scwrl_541998676_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_541998676_a.pdb or /var/tmp/from_scwrl_541998676_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_541998676.pdb or /var/tmp/from_scwrl_541998676_b.pdb or /var/tmp/from_scwrl_541998676_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_509411437.pdb -s /var/tmp/to_scwrl_509411437.seq -o /var/tmp/from_scwrl_509411437.pdb > /var/tmp/scwrl_509411437.log Error: Couldn't open file /var/tmp/from_scwrl_509411437.pdb or /var/tmp/from_scwrl_509411437.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_509411437_b.pdb or decoys//var/tmp/from_scwrl_509411437_b.pdb.gz for input Trying /var/tmp/from_scwrl_509411437_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_509411437_b.pdb or /var/tmp/from_scwrl_509411437_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_509411437_a.pdb or decoys//var/tmp/from_scwrl_509411437_a.pdb.gz for input Trying /var/tmp/from_scwrl_509411437_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_509411437_a.pdb or /var/tmp/from_scwrl_509411437_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_509411437.pdb or /var/tmp/from_scwrl_509411437_b.pdb or /var/tmp/from_scwrl_509411437_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_568567084.pdb -s /var/tmp/to_scwrl_568567084.seq -o /var/tmp/from_scwrl_568567084.pdb > /var/tmp/scwrl_568567084.log Error: Couldn't open file /var/tmp/from_scwrl_568567084.pdb or /var/tmp/from_scwrl_568567084.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_568567084_b.pdb or decoys//var/tmp/from_scwrl_568567084_b.pdb.gz for input Trying /var/tmp/from_scwrl_568567084_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_568567084_b.pdb or /var/tmp/from_scwrl_568567084_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_568567084_a.pdb or decoys//var/tmp/from_scwrl_568567084_a.pdb.gz for input Trying /var/tmp/from_scwrl_568567084_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_568567084_a.pdb or /var/tmp/from_scwrl_568567084_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_568567084.pdb or /var/tmp/from_scwrl_568567084_b.pdb or /var/tmp/from_scwrl_568567084_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_417062306.pdb -s /var/tmp/to_scwrl_417062306.seq -o /var/tmp/from_scwrl_417062306.pdb > /var/tmp/scwrl_417062306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_417062306.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2090543177.pdb -s /var/tmp/to_scwrl_2090543177.seq -o /var/tmp/from_scwrl_2090543177.pdb > /var/tmp/scwrl_2090543177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2090543177.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1001968517.pdb -s /var/tmp/to_scwrl_1001968517.seq -o /var/tmp/from_scwrl_1001968517.pdb > /var/tmp/scwrl_1001968517.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1001968517.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_947995688.pdb -s /var/tmp/to_scwrl_947995688.seq -o /var/tmp/from_scwrl_947995688.pdb > /var/tmp/scwrl_947995688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_947995688.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_109159110.pdb -s /var/tmp/to_scwrl_109159110.seq -o /var/tmp/from_scwrl_109159110.pdb > /var/tmp/scwrl_109159110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_109159110.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_943944118.pdb -s /var/tmp/to_scwrl_943944118.seq -o /var/tmp/from_scwrl_943944118.pdb > /var/tmp/scwrl_943944118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_943944118.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1716261115.pdb -s /var/tmp/to_scwrl_1716261115.seq -o /var/tmp/from_scwrl_1716261115.pdb > /var/tmp/scwrl_1716261115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1716261115.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1680806082.pdb -s /var/tmp/to_scwrl_1680806082.seq -o /var/tmp/from_scwrl_1680806082.pdb > /var/tmp/scwrl_1680806082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1680806082.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1224576694.pdb -s /var/tmp/to_scwrl_1224576694.seq -o /var/tmp/from_scwrl_1224576694.pdb > /var/tmp/scwrl_1224576694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1224576694.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_530136514.pdb -s /var/tmp/to_scwrl_530136514.seq -o /var/tmp/from_scwrl_530136514.pdb > /var/tmp/scwrl_530136514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530136514.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_233391511.pdb -s /var/tmp/to_scwrl_233391511.seq -o /var/tmp/from_scwrl_233391511.pdb > /var/tmp/scwrl_233391511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_233391511.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_772600197.pdb -s /var/tmp/to_scwrl_772600197.seq -o /var/tmp/from_scwrl_772600197.pdb > /var/tmp/scwrl_772600197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_772600197.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 141 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1653037790.pdb -s /var/tmp/to_scwrl_1653037790.seq -o /var/tmp/from_scwrl_1653037790.pdb > /var/tmp/scwrl_1653037790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1653037790.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1879938598.pdb -s /var/tmp/to_scwrl_1879938598.seq -o /var/tmp/from_scwrl_1879938598.pdb > /var/tmp/scwrl_1879938598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1879938598.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1734687594.pdb -s /var/tmp/to_scwrl_1734687594.seq -o /var/tmp/from_scwrl_1734687594.pdb > /var/tmp/scwrl_1734687594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1734687594.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_959000595.pdb -s /var/tmp/to_scwrl_959000595.seq -o /var/tmp/from_scwrl_959000595.pdb > /var/tmp/scwrl_959000595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_959000595.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1233126894.pdb -s /var/tmp/to_scwrl_1233126894.seq -o /var/tmp/from_scwrl_1233126894.pdb > /var/tmp/scwrl_1233126894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1233126894.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2088886694.pdb -s /var/tmp/to_scwrl_2088886694.seq -o /var/tmp/from_scwrl_2088886694.pdb > /var/tmp/scwrl_2088886694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2088886694.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 6, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 131, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 287, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 289, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 291, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 293, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 331, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 333, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 335, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 337, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 359, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 361, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 363, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 365, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 367, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 369, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 371, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 373, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 391, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 393, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 395, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 397, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 399, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 401, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 403, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 405, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 467, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 469, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 471, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 473, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 483, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 485, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 487, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 489, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 527, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 529, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 531, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 533, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_853712361.pdb -s /var/tmp/to_scwrl_853712361.seq -o /var/tmp/from_scwrl_853712361.pdb > /var/tmp/scwrl_853712361.log Error: Couldn't open file /var/tmp/from_scwrl_853712361.pdb or /var/tmp/from_scwrl_853712361.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_853712361_b.pdb or decoys//var/tmp/from_scwrl_853712361_b.pdb.gz for input Trying /var/tmp/from_scwrl_853712361_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_853712361_b.pdb or /var/tmp/from_scwrl_853712361_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_853712361_a.pdb or decoys//var/tmp/from_scwrl_853712361_a.pdb.gz for input Trying /var/tmp/from_scwrl_853712361_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_853712361_a.pdb or /var/tmp/from_scwrl_853712361_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_853712361.pdb or /var/tmp/from_scwrl_853712361_b.pdb or /var/tmp/from_scwrl_853712361_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1786371227.pdb -s /var/tmp/to_scwrl_1786371227.seq -o /var/tmp/from_scwrl_1786371227.pdb > /var/tmp/scwrl_1786371227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1786371227.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1423121190.pdb -s /var/tmp/to_scwrl_1423121190.seq -o /var/tmp/from_scwrl_1423121190.pdb > /var/tmp/scwrl_1423121190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1423121190.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1361884868.pdb -s /var/tmp/to_scwrl_1361884868.seq -o /var/tmp/from_scwrl_1361884868.pdb > /var/tmp/scwrl_1361884868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1361884868.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_721679097.pdb -s /var/tmp/to_scwrl_721679097.seq -o /var/tmp/from_scwrl_721679097.pdb > /var/tmp/scwrl_721679097.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_721679097.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_498747279.pdb -s /var/tmp/to_scwrl_498747279.seq -o /var/tmp/from_scwrl_498747279.pdb > /var/tmp/scwrl_498747279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_498747279.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1763089681.pdb -s /var/tmp/to_scwrl_1763089681.seq -o /var/tmp/from_scwrl_1763089681.pdb > /var/tmp/scwrl_1763089681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1763089681.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_555421526.pdb -s /var/tmp/to_scwrl_555421526.seq -o /var/tmp/from_scwrl_555421526.pdb > /var/tmp/scwrl_555421526.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_555421526.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_620295292.pdb -s /var/tmp/to_scwrl_620295292.seq -o /var/tmp/from_scwrl_620295292.pdb > /var/tmp/scwrl_620295292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_620295292.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_838577958.pdb -s /var/tmp/to_scwrl_838577958.seq -o /var/tmp/from_scwrl_838577958.pdb > /var/tmp/scwrl_838577958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_838577958.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1097420201.pdb -s /var/tmp/to_scwrl_1097420201.seq -o /var/tmp/from_scwrl_1097420201.pdb > /var/tmp/scwrl_1097420201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1097420201.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1129706728.pdb -s /var/tmp/to_scwrl_1129706728.seq -o /var/tmp/from_scwrl_1129706728.pdb > /var/tmp/scwrl_1129706728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1129706728.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1407145042.pdb -s /var/tmp/to_scwrl_1407145042.seq -o /var/tmp/from_scwrl_1407145042.pdb > /var/tmp/scwrl_1407145042.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1407145042.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1514482507.pdb -s /var/tmp/to_scwrl_1514482507.seq -o /var/tmp/from_scwrl_1514482507.pdb > /var/tmp/scwrl_1514482507.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1514482507.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1072766259.pdb -s /var/tmp/to_scwrl_1072766259.seq -o /var/tmp/from_scwrl_1072766259.pdb > /var/tmp/scwrl_1072766259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072766259.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_261629912.pdb -s /var/tmp/to_scwrl_261629912.seq -o /var/tmp/from_scwrl_261629912.pdb > /var/tmp/scwrl_261629912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_261629912.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_314994548.pdb -s /var/tmp/to_scwrl_314994548.seq -o /var/tmp/from_scwrl_314994548.pdb > /var/tmp/scwrl_314994548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_314994548.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1181925369.pdb -s /var/tmp/to_scwrl_1181925369.seq -o /var/tmp/from_scwrl_1181925369.pdb > /var/tmp/scwrl_1181925369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1181925369.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1205574030.pdb -s /var/tmp/to_scwrl_1205574030.seq -o /var/tmp/from_scwrl_1205574030.pdb > /var/tmp/scwrl_1205574030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1205574030.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 Skipped atom 150, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 152, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 154, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 156, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 458, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 460, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 462, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz Skipped atom 464, because occupancy 1.000 <= existing 1.000 in servers/FUGUE_AL3.pdb.gz # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2031255664.pdb -s /var/tmp/to_scwrl_2031255664.seq -o /var/tmp/from_scwrl_2031255664.pdb > /var/tmp/scwrl_2031255664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2031255664.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_715247805.pdb -s /var/tmp/to_scwrl_715247805.seq -o /var/tmp/from_scwrl_715247805.pdb > /var/tmp/scwrl_715247805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715247805.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_282667078.pdb -s /var/tmp/to_scwrl_282667078.seq -o /var/tmp/from_scwrl_282667078.pdb > /var/tmp/scwrl_282667078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_282667078.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_413908531.pdb -s /var/tmp/to_scwrl_413908531.seq -o /var/tmp/from_scwrl_413908531.pdb > /var/tmp/scwrl_413908531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_413908531.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_948639317.pdb -s /var/tmp/to_scwrl_948639317.seq -o /var/tmp/from_scwrl_948639317.pdb > /var/tmp/scwrl_948639317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_948639317.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1055267275.pdb -s /var/tmp/to_scwrl_1055267275.seq -o /var/tmp/from_scwrl_1055267275.pdb > /var/tmp/scwrl_1055267275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1055267275.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2066946322.pdb -s /var/tmp/to_scwrl_2066946322.seq -o /var/tmp/from_scwrl_2066946322.pdb > /var/tmp/scwrl_2066946322.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2066946322.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_681094268.pdb -s /var/tmp/to_scwrl_681094268.seq -o /var/tmp/from_scwrl_681094268.pdb > /var/tmp/scwrl_681094268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_681094268.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_642471222.pdb -s /var/tmp/to_scwrl_642471222.seq -o /var/tmp/from_scwrl_642471222.pdb > /var/tmp/scwrl_642471222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642471222.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_878463270.pdb -s /var/tmp/to_scwrl_878463270.seq -o /var/tmp/from_scwrl_878463270.pdb > /var/tmp/scwrl_878463270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_878463270.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1914221163.pdb -s /var/tmp/to_scwrl_1914221163.seq -o /var/tmp/from_scwrl_1914221163.pdb > /var/tmp/scwrl_1914221163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1914221163.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_583874269.pdb -s /var/tmp/to_scwrl_583874269.seq -o /var/tmp/from_scwrl_583874269.pdb > /var/tmp/scwrl_583874269.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_583874269.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1732175631.pdb -s /var/tmp/to_scwrl_1732175631.seq -o /var/tmp/from_scwrl_1732175631.pdb > /var/tmp/scwrl_1732175631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732175631.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1553108743.pdb -s /var/tmp/to_scwrl_1553108743.seq -o /var/tmp/from_scwrl_1553108743.pdb > /var/tmp/scwrl_1553108743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1553108743.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2006995459.pdb -s /var/tmp/to_scwrl_2006995459.seq -o /var/tmp/from_scwrl_2006995459.pdb > /var/tmp/scwrl_2006995459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2006995459.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_946576853.pdb -s /var/tmp/to_scwrl_946576853.seq -o /var/tmp/from_scwrl_946576853.pdb > /var/tmp/scwrl_946576853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_946576853.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_127304193.pdb -s /var/tmp/to_scwrl_127304193.seq -o /var/tmp/from_scwrl_127304193.pdb > /var/tmp/scwrl_127304193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_127304193.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_358259092.pdb -s /var/tmp/to_scwrl_358259092.seq -o /var/tmp/from_scwrl_358259092.pdb > /var/tmp/scwrl_358259092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_358259092.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_562182887.pdb -s /var/tmp/to_scwrl_562182887.seq -o /var/tmp/from_scwrl_562182887.pdb > /var/tmp/scwrl_562182887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_562182887.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_682725719.pdb -s /var/tmp/to_scwrl_682725719.seq -o /var/tmp/from_scwrl_682725719.pdb > /var/tmp/scwrl_682725719.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_682725719.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_978554384.pdb -s /var/tmp/to_scwrl_978554384.seq -o /var/tmp/from_scwrl_978554384.pdb > /var/tmp/scwrl_978554384.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_978554384.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1400760845.pdb -s /var/tmp/to_scwrl_1400760845.seq -o /var/tmp/from_scwrl_1400760845.pdb > /var/tmp/scwrl_1400760845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1400760845.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1780145920.pdb -s /var/tmp/to_scwrl_1780145920.seq -o /var/tmp/from_scwrl_1780145920.pdb > /var/tmp/scwrl_1780145920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1780145920.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2108261112.pdb -s /var/tmp/to_scwrl_2108261112.seq -o /var/tmp/from_scwrl_2108261112.pdb > /var/tmp/scwrl_2108261112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2108261112.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_660422241.pdb -s /var/tmp/to_scwrl_660422241.seq -o /var/tmp/from_scwrl_660422241.pdb > /var/tmp/scwrl_660422241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_660422241.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1147144780.pdb -s /var/tmp/to_scwrl_1147144780.seq -o /var/tmp/from_scwrl_1147144780.pdb > /var/tmp/scwrl_1147144780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1147144780.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 150 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1033543724.pdb -s /var/tmp/to_scwrl_1033543724.seq -o /var/tmp/from_scwrl_1033543724.pdb > /var/tmp/scwrl_1033543724.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1033543724.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_922052153.pdb -s /var/tmp/to_scwrl_922052153.seq -o /var/tmp/from_scwrl_922052153.pdb > /var/tmp/scwrl_922052153.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_922052153.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1462139328.pdb -s /var/tmp/to_scwrl_1462139328.seq -o /var/tmp/from_scwrl_1462139328.pdb > /var/tmp/scwrl_1462139328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1462139328.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_67985446.pdb -s /var/tmp/to_scwrl_67985446.seq -o /var/tmp/from_scwrl_67985446.pdb > /var/tmp/scwrl_67985446.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_67985446.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2127626183.pdb -s /var/tmp/to_scwrl_2127626183.seq -o /var/tmp/from_scwrl_2127626183.pdb > /var/tmp/scwrl_2127626183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2127626183.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1345911345.pdb -s /var/tmp/to_scwrl_1345911345.seq -o /var/tmp/from_scwrl_1345911345.pdb > /var/tmp/scwrl_1345911345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1345911345.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_783233252.pdb -s /var/tmp/to_scwrl_783233252.seq -o /var/tmp/from_scwrl_783233252.pdb > /var/tmp/scwrl_783233252.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_783233252.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_262809614.pdb -s /var/tmp/to_scwrl_262809614.seq -o /var/tmp/from_scwrl_262809614.pdb > /var/tmp/scwrl_262809614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_262809614.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1759819877.pdb -s /var/tmp/to_scwrl_1759819877.seq -o /var/tmp/from_scwrl_1759819877.pdb > /var/tmp/scwrl_1759819877.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1759819877.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1731872568.pdb -s /var/tmp/to_scwrl_1731872568.seq -o /var/tmp/from_scwrl_1731872568.pdb > /var/tmp/scwrl_1731872568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1731872568.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1318076888.pdb -s /var/tmp/to_scwrl_1318076888.seq -o /var/tmp/from_scwrl_1318076888.pdb > /var/tmp/scwrl_1318076888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1318076888.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1679282552.pdb -s /var/tmp/to_scwrl_1679282552.seq -o /var/tmp/from_scwrl_1679282552.pdb > /var/tmp/scwrl_1679282552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1679282552.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_265483189.pdb -s /var/tmp/to_scwrl_265483189.seq -o /var/tmp/from_scwrl_265483189.pdb > /var/tmp/scwrl_265483189.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265483189.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1960548110.pdb -s /var/tmp/to_scwrl_1960548110.seq -o /var/tmp/from_scwrl_1960548110.pdb > /var/tmp/scwrl_1960548110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1960548110.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_410262175.pdb -s /var/tmp/to_scwrl_410262175.seq -o /var/tmp/from_scwrl_410262175.pdb > /var/tmp/scwrl_410262175.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_410262175.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_32220705.pdb -s /var/tmp/to_scwrl_32220705.seq -o /var/tmp/from_scwrl_32220705.pdb > /var/tmp/scwrl_32220705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_32220705.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_396938733.pdb -s /var/tmp/to_scwrl_396938733.seq -o /var/tmp/from_scwrl_396938733.pdb > /var/tmp/scwrl_396938733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_396938733.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2142437806.pdb -s /var/tmp/to_scwrl_2142437806.seq -o /var/tmp/from_scwrl_2142437806.pdb > /var/tmp/scwrl_2142437806.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2142437806.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1585329448.pdb -s /var/tmp/to_scwrl_1585329448.seq -o /var/tmp/from_scwrl_1585329448.pdb > /var/tmp/scwrl_1585329448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1585329448.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_256450545.pdb -s /var/tmp/to_scwrl_256450545.seq -o /var/tmp/from_scwrl_256450545.pdb > /var/tmp/scwrl_256450545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_256450545.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_941531013.pdb -s /var/tmp/to_scwrl_941531013.seq -o /var/tmp/from_scwrl_941531013.pdb > /var/tmp/scwrl_941531013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_941531013.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1712633641.pdb -s /var/tmp/to_scwrl_1712633641.seq -o /var/tmp/from_scwrl_1712633641.pdb > /var/tmp/scwrl_1712633641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1712633641.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_614709637.pdb -s /var/tmp/to_scwrl_614709637.seq -o /var/tmp/from_scwrl_614709637.pdb > /var/tmp/scwrl_614709637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_614709637.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1503713899.pdb -s /var/tmp/to_scwrl_1503713899.seq -o /var/tmp/from_scwrl_1503713899.pdb > /var/tmp/scwrl_1503713899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1503713899.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_247875713.pdb -s /var/tmp/to_scwrl_247875713.seq -o /var/tmp/from_scwrl_247875713.pdb > /var/tmp/scwrl_247875713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_247875713.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1593264020.pdb -s /var/tmp/to_scwrl_1593264020.seq -o /var/tmp/from_scwrl_1593264020.pdb > /var/tmp/scwrl_1593264020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1593264020.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_756991098.pdb -s /var/tmp/to_scwrl_756991098.seq -o /var/tmp/from_scwrl_756991098.pdb > /var/tmp/scwrl_756991098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_756991098.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2028021633.pdb -s /var/tmp/to_scwrl_2028021633.seq -o /var/tmp/from_scwrl_2028021633.pdb > /var/tmp/scwrl_2028021633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2028021633.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1554041485.pdb -s /var/tmp/to_scwrl_1554041485.seq -o /var/tmp/from_scwrl_1554041485.pdb > /var/tmp/scwrl_1554041485.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1554041485.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1417413338.pdb -s /var/tmp/to_scwrl_1417413338.seq -o /var/tmp/from_scwrl_1417413338.pdb > /var/tmp/scwrl_1417413338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1417413338.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1027682767.pdb -s /var/tmp/to_scwrl_1027682767.seq -o /var/tmp/from_scwrl_1027682767.pdb > /var/tmp/scwrl_1027682767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1027682767.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 43 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_440101563.pdb -s /var/tmp/to_scwrl_440101563.seq -o /var/tmp/from_scwrl_440101563.pdb > /var/tmp/scwrl_440101563.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_440101563.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_191981845.pdb -s /var/tmp/to_scwrl_191981845.seq -o /var/tmp/from_scwrl_191981845.pdb > /var/tmp/scwrl_191981845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_191981845.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_342338449.pdb -s /var/tmp/to_scwrl_342338449.seq -o /var/tmp/from_scwrl_342338449.pdb > /var/tmp/scwrl_342338449.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_342338449.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_508087009.pdb -s /var/tmp/to_scwrl_508087009.seq -o /var/tmp/from_scwrl_508087009.pdb > /var/tmp/scwrl_508087009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_508087009.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_172124381.pdb -s /var/tmp/to_scwrl_172124381.seq -o /var/tmp/from_scwrl_172124381.pdb > /var/tmp/scwrl_172124381.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_172124381.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1688249794.pdb -s /var/tmp/to_scwrl_1688249794.seq -o /var/tmp/from_scwrl_1688249794.pdb > /var/tmp/scwrl_1688249794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1688249794.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1291320260.pdb -s /var/tmp/to_scwrl_1291320260.seq -o /var/tmp/from_scwrl_1291320260.pdb > /var/tmp/scwrl_1291320260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1291320260.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_434933996.pdb -s /var/tmp/to_scwrl_434933996.seq -o /var/tmp/from_scwrl_434933996.pdb > /var/tmp/scwrl_434933996.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_434933996.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1300586024.pdb -s /var/tmp/to_scwrl_1300586024.seq -o /var/tmp/from_scwrl_1300586024.pdb > /var/tmp/scwrl_1300586024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1300586024.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_875709182.pdb -s /var/tmp/to_scwrl_875709182.seq -o /var/tmp/from_scwrl_875709182.pdb > /var/tmp/scwrl_875709182.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_875709182.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1753010884.pdb -s /var/tmp/to_scwrl_1753010884.seq -o /var/tmp/from_scwrl_1753010884.pdb > /var/tmp/scwrl_1753010884.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1753010884.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_832384930.pdb -s /var/tmp/to_scwrl_832384930.seq -o /var/tmp/from_scwrl_832384930.pdb > /var/tmp/scwrl_832384930.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_832384930.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1141192371.pdb -s /var/tmp/to_scwrl_1141192371.seq -o /var/tmp/from_scwrl_1141192371.pdb > /var/tmp/scwrl_1141192371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1141192371.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1566075348.pdb -s /var/tmp/to_scwrl_1566075348.seq -o /var/tmp/from_scwrl_1566075348.pdb > /var/tmp/scwrl_1566075348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566075348.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1242647105.pdb -s /var/tmp/to_scwrl_1242647105.seq -o /var/tmp/from_scwrl_1242647105.pdb > /var/tmp/scwrl_1242647105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1242647105.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1173413076.pdb -s /var/tmp/to_scwrl_1173413076.seq -o /var/tmp/from_scwrl_1173413076.pdb > /var/tmp/scwrl_1173413076.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1173413076.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1963014081.pdb -s /var/tmp/to_scwrl_1963014081.seq -o /var/tmp/from_scwrl_1963014081.pdb > /var/tmp/scwrl_1963014081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1963014081.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1237601264.pdb -s /var/tmp/to_scwrl_1237601264.seq -o /var/tmp/from_scwrl_1237601264.pdb > /var/tmp/scwrl_1237601264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1237601264.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_611258879.pdb -s /var/tmp/to_scwrl_611258879.seq -o /var/tmp/from_scwrl_611258879.pdb > /var/tmp/scwrl_611258879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_611258879.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 148 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_71980979.pdb -s /var/tmp/to_scwrl_71980979.seq -o /var/tmp/from_scwrl_71980979.pdb > /var/tmp/scwrl_71980979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_71980979.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_31648630.pdb -s /var/tmp/to_scwrl_31648630.seq -o /var/tmp/from_scwrl_31648630.pdb > /var/tmp/scwrl_31648630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31648630.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 153 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_176408873.pdb -s /var/tmp/to_scwrl_176408873.seq -o /var/tmp/from_scwrl_176408873.pdb > /var/tmp/scwrl_176408873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_176408873.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 49 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_686690617.pdb -s /var/tmp/to_scwrl_686690617.seq -o /var/tmp/from_scwrl_686690617.pdb > /var/tmp/scwrl_686690617.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_686690617.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 52 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1535362530.pdb -s /var/tmp/to_scwrl_1535362530.seq -o /var/tmp/from_scwrl_1535362530.pdb > /var/tmp/scwrl_1535362530.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1535362530.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_424284587.pdb -s /var/tmp/to_scwrl_424284587.seq -o /var/tmp/from_scwrl_424284587.pdb > /var/tmp/scwrl_424284587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_424284587.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_132470990.pdb -s /var/tmp/to_scwrl_132470990.seq -o /var/tmp/from_scwrl_132470990.pdb > /var/tmp/scwrl_132470990.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_132470990.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 142 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_144869981.pdb -s /var/tmp/to_scwrl_144869981.seq -o /var/tmp/from_scwrl_144869981.pdb > /var/tmp/scwrl_144869981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_144869981.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_304822573.pdb -s /var/tmp/to_scwrl_304822573.seq -o /var/tmp/from_scwrl_304822573.pdb > /var/tmp/scwrl_304822573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_304822573.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 135 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1686512476.pdb -s /var/tmp/to_scwrl_1686512476.seq -o /var/tmp/from_scwrl_1686512476.pdb > /var/tmp/scwrl_1686512476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1686512476.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1562283320.pdb -s /var/tmp/to_scwrl_1562283320.seq -o /var/tmp/from_scwrl_1562283320.pdb > /var/tmp/scwrl_1562283320.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1562283320.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1332505340.pdb -s /var/tmp/to_scwrl_1332505340.seq -o /var/tmp/from_scwrl_1332505340.pdb > /var/tmp/scwrl_1332505340.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332505340.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2126614039.pdb -s /var/tmp/to_scwrl_2126614039.seq -o /var/tmp/from_scwrl_2126614039.pdb > /var/tmp/scwrl_2126614039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2126614039.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1754265165.pdb -s /var/tmp/to_scwrl_1754265165.seq -o /var/tmp/from_scwrl_1754265165.pdb > /var/tmp/scwrl_1754265165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754265165.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1674843789.pdb -s /var/tmp/to_scwrl_1674843789.seq -o /var/tmp/from_scwrl_1674843789.pdb > /var/tmp/scwrl_1674843789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1674843789.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_487217401.pdb -s /var/tmp/to_scwrl_487217401.seq -o /var/tmp/from_scwrl_487217401.pdb > /var/tmp/scwrl_487217401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_487217401.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1926389546.pdb -s /var/tmp/to_scwrl_1926389546.seq -o /var/tmp/from_scwrl_1926389546.pdb > /var/tmp/scwrl_1926389546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1926389546.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1215609936.pdb -s /var/tmp/to_scwrl_1215609936.seq -o /var/tmp/from_scwrl_1215609936.pdb > /var/tmp/scwrl_1215609936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1215609936.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1778537662.pdb -s /var/tmp/to_scwrl_1778537662.seq -o /var/tmp/from_scwrl_1778537662.pdb > /var/tmp/scwrl_1778537662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1778537662.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_213839895.pdb -s /var/tmp/to_scwrl_213839895.seq -o /var/tmp/from_scwrl_213839895.pdb > /var/tmp/scwrl_213839895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_213839895.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_368712315.pdb -s /var/tmp/to_scwrl_368712315.seq -o /var/tmp/from_scwrl_368712315.pdb > /var/tmp/scwrl_368712315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368712315.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_506763197.pdb -s /var/tmp/to_scwrl_506763197.seq -o /var/tmp/from_scwrl_506763197.pdb > /var/tmp/scwrl_506763197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_506763197.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1966850780.pdb -s /var/tmp/to_scwrl_1966850780.seq -o /var/tmp/from_scwrl_1966850780.pdb > /var/tmp/scwrl_1966850780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1966850780.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1201097244.pdb -s /var/tmp/to_scwrl_1201097244.seq -o /var/tmp/from_scwrl_1201097244.pdb > /var/tmp/scwrl_1201097244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1201097244.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1647955568.pdb -s /var/tmp/to_scwrl_1647955568.seq -o /var/tmp/from_scwrl_1647955568.pdb > /var/tmp/scwrl_1647955568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1647955568.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1385442481.pdb -s /var/tmp/to_scwrl_1385442481.seq -o /var/tmp/from_scwrl_1385442481.pdb > /var/tmp/scwrl_1385442481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1385442481.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_296260703.pdb -s /var/tmp/to_scwrl_296260703.seq -o /var/tmp/from_scwrl_296260703.pdb > /var/tmp/scwrl_296260703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_296260703.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_673884999.pdb -s /var/tmp/to_scwrl_673884999.seq -o /var/tmp/from_scwrl_673884999.pdb > /var/tmp/scwrl_673884999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_673884999.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1200972915.pdb -s /var/tmp/to_scwrl_1200972915.seq -o /var/tmp/from_scwrl_1200972915.pdb > /var/tmp/scwrl_1200972915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200972915.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1533861968.pdb -s /var/tmp/to_scwrl_1533861968.seq -o /var/tmp/from_scwrl_1533861968.pdb > /var/tmp/scwrl_1533861968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1533861968.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1285143877.pdb -s /var/tmp/to_scwrl_1285143877.seq -o /var/tmp/from_scwrl_1285143877.pdb > /var/tmp/scwrl_1285143877.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1285143877.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1272953894.pdb -s /var/tmp/to_scwrl_1272953894.seq -o /var/tmp/from_scwrl_1272953894.pdb > /var/tmp/scwrl_1272953894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1272953894.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1565510598.pdb -s /var/tmp/to_scwrl_1565510598.seq -o /var/tmp/from_scwrl_1565510598.pdb > /var/tmp/scwrl_1565510598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1565510598.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1461552750.pdb -s /var/tmp/to_scwrl_1461552750.seq -o /var/tmp/from_scwrl_1461552750.pdb > /var/tmp/scwrl_1461552750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1461552750.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1959644511.pdb -s /var/tmp/to_scwrl_1959644511.seq -o /var/tmp/from_scwrl_1959644511.pdb > /var/tmp/scwrl_1959644511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1959644511.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 144 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_953389482.pdb -s /var/tmp/to_scwrl_953389482.seq -o /var/tmp/from_scwrl_953389482.pdb > /var/tmp/scwrl_953389482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_953389482.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1885837337.pdb -s /var/tmp/to_scwrl_1885837337.seq -o /var/tmp/from_scwrl_1885837337.pdb > /var/tmp/scwrl_1885837337.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1885837337.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2092115502.pdb -s /var/tmp/to_scwrl_2092115502.seq -o /var/tmp/from_scwrl_2092115502.pdb > /var/tmp/scwrl_2092115502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2092115502.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1098259463.pdb -s /var/tmp/to_scwrl_1098259463.seq -o /var/tmp/from_scwrl_1098259463.pdb > /var/tmp/scwrl_1098259463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1098259463.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_43176264.pdb -s /var/tmp/to_scwrl_43176264.seq -o /var/tmp/from_scwrl_43176264.pdb > /var/tmp/scwrl_43176264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_43176264.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 146 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1631144331.pdb -s /var/tmp/to_scwrl_1631144331.seq -o /var/tmp/from_scwrl_1631144331.pdb > /var/tmp/scwrl_1631144331.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631144331.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_513059137.pdb -s /var/tmp/to_scwrl_513059137.seq -o /var/tmp/from_scwrl_513059137.pdb > /var/tmp/scwrl_513059137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_513059137.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1375681604.pdb -s /var/tmp/to_scwrl_1375681604.seq -o /var/tmp/from_scwrl_1375681604.pdb > /var/tmp/scwrl_1375681604.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375681604.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1610274723.pdb -s /var/tmp/to_scwrl_1610274723.seq -o /var/tmp/from_scwrl_1610274723.pdb > /var/tmp/scwrl_1610274723.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1610274723.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_119840655.pdb -s /var/tmp/to_scwrl_119840655.seq -o /var/tmp/from_scwrl_119840655.pdb > /var/tmp/scwrl_119840655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_119840655.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_903041747.pdb -s /var/tmp/to_scwrl_903041747.seq -o /var/tmp/from_scwrl_903041747.pdb > /var/tmp/scwrl_903041747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_903041747.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2097492124.pdb -s /var/tmp/to_scwrl_2097492124.seq -o /var/tmp/from_scwrl_2097492124.pdb > /var/tmp/scwrl_2097492124.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2097492124.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2046230201.pdb -s /var/tmp/to_scwrl_2046230201.seq -o /var/tmp/from_scwrl_2046230201.pdb > /var/tmp/scwrl_2046230201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2046230201.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2118651683.pdb -s /var/tmp/to_scwrl_2118651683.seq -o /var/tmp/from_scwrl_2118651683.pdb > /var/tmp/scwrl_2118651683.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2118651683.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1728546139.pdb -s /var/tmp/to_scwrl_1728546139.seq -o /var/tmp/from_scwrl_1728546139.pdb > /var/tmp/scwrl_1728546139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1728546139.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_112586450.pdb -s /var/tmp/to_scwrl_112586450.seq -o /var/tmp/from_scwrl_112586450.pdb > /var/tmp/scwrl_112586450.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_112586450.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_339880351.pdb -s /var/tmp/to_scwrl_339880351.seq -o /var/tmp/from_scwrl_339880351.pdb > /var/tmp/scwrl_339880351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_339880351.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_87825690.pdb -s /var/tmp/to_scwrl_87825690.seq -o /var/tmp/from_scwrl_87825690.pdb > /var/tmp/scwrl_87825690.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_87825690.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2079437230.pdb -s /var/tmp/to_scwrl_2079437230.seq -o /var/tmp/from_scwrl_2079437230.pdb > /var/tmp/scwrl_2079437230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2079437230.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1540977596.pdb -s /var/tmp/to_scwrl_1540977596.seq -o /var/tmp/from_scwrl_1540977596.pdb > /var/tmp/scwrl_1540977596.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1540977596.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1735781258.pdb -s /var/tmp/to_scwrl_1735781258.seq -o /var/tmp/from_scwrl_1735781258.pdb > /var/tmp/scwrl_1735781258.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1735781258.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1317396064.pdb -s /var/tmp/to_scwrl_1317396064.seq -o /var/tmp/from_scwrl_1317396064.pdb > /var/tmp/scwrl_1317396064.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1317396064.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1837238299.pdb -s /var/tmp/to_scwrl_1837238299.seq -o /var/tmp/from_scwrl_1837238299.pdb > /var/tmp/scwrl_1837238299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1837238299.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_262182610.pdb -s /var/tmp/to_scwrl_262182610.seq -o /var/tmp/from_scwrl_262182610.pdb > /var/tmp/scwrl_262182610.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_262182610.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_370885333.pdb -s /var/tmp/to_scwrl_370885333.seq -o /var/tmp/from_scwrl_370885333.pdb > /var/tmp/scwrl_370885333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_370885333.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1223616620.pdb -s /var/tmp/to_scwrl_1223616620.seq -o /var/tmp/from_scwrl_1223616620.pdb > /var/tmp/scwrl_1223616620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1223616620.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1547326487.pdb -s /var/tmp/to_scwrl_1547326487.seq -o /var/tmp/from_scwrl_1547326487.pdb > /var/tmp/scwrl_1547326487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1547326487.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 438, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 440, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 442, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz Skipped atom 444, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL3.pdb.gz # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1643839227.pdb -s /var/tmp/to_scwrl_1643839227.seq -o /var/tmp/from_scwrl_1643839227.pdb > /var/tmp/scwrl_1643839227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1643839227.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_641643573.pdb -s /var/tmp/to_scwrl_641643573.seq -o /var/tmp/from_scwrl_641643573.pdb > /var/tmp/scwrl_641643573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_641643573.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_861395592.pdb -s /var/tmp/to_scwrl_861395592.seq -o /var/tmp/from_scwrl_861395592.pdb > /var/tmp/scwrl_861395592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_861395592.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1456000092.pdb -s /var/tmp/to_scwrl_1456000092.seq -o /var/tmp/from_scwrl_1456000092.pdb > /var/tmp/scwrl_1456000092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1456000092.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1595033054.pdb -s /var/tmp/to_scwrl_1595033054.seq -o /var/tmp/from_scwrl_1595033054.pdb > /var/tmp/scwrl_1595033054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1595033054.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_599749282.pdb -s /var/tmp/to_scwrl_599749282.seq -o /var/tmp/from_scwrl_599749282.pdb > /var/tmp/scwrl_599749282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_599749282.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1400631947.pdb -s /var/tmp/to_scwrl_1400631947.seq -o /var/tmp/from_scwrl_1400631947.pdb > /var/tmp/scwrl_1400631947.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1400631947.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_545808871.pdb -s /var/tmp/to_scwrl_545808871.seq -o /var/tmp/from_scwrl_545808871.pdb > /var/tmp/scwrl_545808871.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_545808871.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 132 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_642925546.pdb -s /var/tmp/to_scwrl_642925546.seq -o /var/tmp/from_scwrl_642925546.pdb > /var/tmp/scwrl_642925546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642925546.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_884292632.pdb -s /var/tmp/to_scwrl_884292632.seq -o /var/tmp/from_scwrl_884292632.pdb > /var/tmp/scwrl_884292632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_884292632.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 152 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1058868008.pdb -s /var/tmp/to_scwrl_1058868008.seq -o /var/tmp/from_scwrl_1058868008.pdb > /var/tmp/scwrl_1058868008.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1058868008.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 157 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2018607150.pdb -s /var/tmp/to_scwrl_2018607150.seq -o /var/tmp/from_scwrl_2018607150.pdb > /var/tmp/scwrl_2018607150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2018607150.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_347083708.pdb -s /var/tmp/to_scwrl_347083708.seq -o /var/tmp/from_scwrl_347083708.pdb > /var/tmp/scwrl_347083708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347083708.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1178708662.pdb -s /var/tmp/to_scwrl_1178708662.seq -o /var/tmp/from_scwrl_1178708662.pdb > /var/tmp/scwrl_1178708662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1178708662.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_774165250.pdb -s /var/tmp/to_scwrl_774165250.seq -o /var/tmp/from_scwrl_774165250.pdb > /var/tmp/scwrl_774165250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_774165250.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_297092185.pdb -s /var/tmp/to_scwrl_297092185.seq -o /var/tmp/from_scwrl_297092185.pdb > /var/tmp/scwrl_297092185.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_297092185.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1077455217.pdb -s /var/tmp/to_scwrl_1077455217.seq -o /var/tmp/from_scwrl_1077455217.pdb > /var/tmp/scwrl_1077455217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1077455217.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 159 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_745333287.pdb -s /var/tmp/to_scwrl_745333287.seq -o /var/tmp/from_scwrl_745333287.pdb > /var/tmp/scwrl_745333287.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745333287.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2025638325.pdb -s /var/tmp/to_scwrl_2025638325.seq -o /var/tmp/from_scwrl_2025638325.pdb > /var/tmp/scwrl_2025638325.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2025638325.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1190041667.pdb -s /var/tmp/to_scwrl_1190041667.seq -o /var/tmp/from_scwrl_1190041667.pdb > /var/tmp/scwrl_1190041667.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1190041667.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1085213637.pdb -s /var/tmp/to_scwrl_1085213637.seq -o /var/tmp/from_scwrl_1085213637.pdb > /var/tmp/scwrl_1085213637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1085213637.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2113464015.pdb -s /var/tmp/to_scwrl_2113464015.seq -o /var/tmp/from_scwrl_2113464015.pdb > /var/tmp/scwrl_2113464015.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2113464015.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1121995250.pdb -s /var/tmp/to_scwrl_1121995250.seq -o /var/tmp/from_scwrl_1121995250.pdb > /var/tmp/scwrl_1121995250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1121995250.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_478707587.pdb -s /var/tmp/to_scwrl_478707587.seq -o /var/tmp/from_scwrl_478707587.pdb > /var/tmp/scwrl_478707587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_478707587.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1701761626.pdb -s /var/tmp/to_scwrl_1701761626.seq -o /var/tmp/from_scwrl_1701761626.pdb > /var/tmp/scwrl_1701761626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1701761626.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_291907668.pdb -s /var/tmp/to_scwrl_291907668.seq -o /var/tmp/from_scwrl_291907668.pdb > /var/tmp/scwrl_291907668.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_291907668.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_168462240.pdb -s /var/tmp/to_scwrl_168462240.seq -o /var/tmp/from_scwrl_168462240.pdb > /var/tmp/scwrl_168462240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_168462240.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1963944237.pdb -s /var/tmp/to_scwrl_1963944237.seq -o /var/tmp/from_scwrl_1963944237.pdb > /var/tmp/scwrl_1963944237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1963944237.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_662793001.pdb -s /var/tmp/to_scwrl_662793001.seq -o /var/tmp/from_scwrl_662793001.pdb > /var/tmp/scwrl_662793001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_662793001.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1392078860.pdb -s /var/tmp/to_scwrl_1392078860.seq -o /var/tmp/from_scwrl_1392078860.pdb > /var/tmp/scwrl_1392078860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1392078860.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1363787077.pdb -s /var/tmp/to_scwrl_1363787077.seq -o /var/tmp/from_scwrl_1363787077.pdb > /var/tmp/scwrl_1363787077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1363787077.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_159148581.pdb -s /var/tmp/to_scwrl_159148581.seq -o /var/tmp/from_scwrl_159148581.pdb > /var/tmp/scwrl_159148581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_159148581.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_2033722433.pdb -s /var/tmp/to_scwrl_2033722433.seq -o /var/tmp/from_scwrl_2033722433.pdb > /var/tmp/scwrl_2033722433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2033722433.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_77699022.pdb -s /var/tmp/to_scwrl_77699022.seq -o /var/tmp/from_scwrl_77699022.pdb > /var/tmp/scwrl_77699022.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_77699022.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0317 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 147 ; scwrl3 -i /var/tmp/to_scwrl_1615148673.pdb -s /var/tmp/to_scwrl_1615148673.seq -o /var/tmp/from_scwrl_1615148673.pdb > /var/tmp/scwrl_1615148673.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1615148673.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 31.4872 sec, elapsed time= 342.221 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_1.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -181.691 shub_TS1 costs 0 real_cost = -185.394 panther2_TS1-scwrl costs 0 real_cost = -179.727 panther2_TS1 costs 0 real_cost = -159.764 nFOLD_TS5-scwrl costs 0 real_cost = 61.5824 nFOLD_TS5 costs 0 real_cost = 131.654 nFOLD_TS4-scwrl costs 0 real_cost = 46.3614 nFOLD_TS4 costs 0 real_cost = 100.161 nFOLD_TS3-scwrl costs 0 real_cost = 86.0784 nFOLD_TS3 costs 0 real_cost = 149.731 nFOLD_TS2-scwrl costs 0 real_cost = -208.327 nFOLD_TS2 costs 0 real_cost = -141.271 nFOLD_TS1-scwrl costs 0 real_cost = -176.951 nFOLD_TS1 costs 0 real_cost = -104.171 mGen-3D_TS1-scwrl costs 0 real_cost = -197.004 mGen-3D_TS1 costs 0 real_cost = -130.039 keasar-server_TS5-scwrl costs 0 real_cost = 24.7789 keasar-server_TS5 costs 0 real_cost = 37.8969 keasar-server_TS4-scwrl costs 0 real_cost = -101.659 keasar-server_TS4 costs 0 real_cost = -91.0048 keasar-server_TS3-scwrl costs 0 real_cost = -173.522 keasar-server_TS3 costs 0 real_cost = -165.643 keasar-server_TS2-scwrl costs 0 real_cost = -208.601 keasar-server_TS2 costs 0 real_cost = -208.232 karypis.srv_TS5-scwrl costs 0 real_cost = 18.9442 karypis.srv_TS5 costs 0 real_cost = 16.5442 karypis.srv_TS4-scwrl costs 0 real_cost = 45.3756 karypis.srv_TS4 costs 0 real_cost = 43.7756 karypis.srv_TS3-scwrl costs 0 real_cost = -201.659 karypis.srv_TS3 costs 0 real_cost = -201.117 karypis.srv_TS2-scwrl costs 0 real_cost = -130.824 karypis.srv_TS2 costs 0 real_cost = -137.343 karypis.srv_TS1-scwrl costs 0 real_cost = 40.3527 karypis.srv_TS1 costs 0 real_cost = 37.9263 karypis.srv.4_TS5-scwrl costs 0 real_cost = 246.906 karypis.srv.4_TS5 costs 0 real_cost = 246.906 karypis.srv.4_TS4-scwrl costs 0 real_cost = 278.924 karypis.srv.4_TS4 costs 0 real_cost = 281.514 karypis.srv.4_TS3-scwrl costs 0 real_cost = 228.962 karypis.srv.4_TS3 costs 0 real_cost = 228.962 karypis.srv.4_TS2-scwrl costs 0 real_cost = 287.096 karypis.srv.4_TS2 costs 0 real_cost = 287.633 karypis.srv.4_TS1-scwrl costs 0 real_cost = 317.784 karypis.srv.4_TS1 costs 0 real_cost = 317.784 karypis.srv.2_TS5-scwrl costs 0 real_cost = -209.734 karypis.srv.2_TS5 costs 0 real_cost = -209.734 karypis.srv.2_TS4-scwrl costs 0 real_cost = -232.486 karypis.srv.2_TS4 costs 0 real_cost = -232.486 karypis.srv.2_TS3-scwrl costs 0 real_cost = -214.521 karypis.srv.2_TS3 costs 0 real_cost = -214.521 karypis.srv.2_TS2-scwrl costs 0 real_cost = -245.237 karypis.srv.2_TS2 costs 0 real_cost = -245.237 karypis.srv.2_TS1-scwrl costs 0 real_cost = -236.221 karypis.srv.2_TS1 costs 0 real_cost = -236.221 gtg_AL5-scwrl costs 0 real_cost = 158.006 gtg_AL5 costs 0 real_cost = 251.94 gtg_AL4-scwrl costs 0 real_cost = 159.859 gtg_AL4 costs 0 real_cost = 264.07 gtg_AL3-scwrl costs 0 real_cost = 138.103 gtg_AL3 costs 0 real_cost = 243.094 gtg_AL2-scwrl costs 0 real_cost = -106.535 gtg_AL2 costs 0 real_cost = -30.1967 gtg_AL1-scwrl costs 0 real_cost = 42.1477 gtg_AL1 costs 0 real_cost = 117.74 forecast-s_AL5-scwrl costs 0 real_cost = 121.229 forecast-s_AL5 costs 0 real_cost = 190.627 forecast-s_AL4-scwrl costs 0 real_cost = 64.2367 forecast-s_AL4 costs 0 real_cost = 149.753 forecast-s_AL3-scwrl costs 0 real_cost = 54.2235 forecast-s_AL3 costs 0 real_cost = 153.792 forecast-s_AL2-scwrl costs 0 real_cost = -185.205 forecast-s_AL2 costs 0 real_cost = -96.7906 forecast-s_AL1-scwrl costs 0 real_cost = -110.533 forecast-s_AL1 costs 0 real_cost = -24.2512 beautshotbase_TS1-scwrl costs 0 real_cost = -195.024 beautshotbase_TS1 costs 0 real_cost = -189.668 beautshot_TS1-scwrl costs 0 real_cost = -191.673 beautshot_TS1 costs 0 real_cost = -181.277 Zhang-Server_TS5-scwrl costs 0 real_cost = -199.552 Zhang-Server_TS5 costs 0 real_cost = -199.024 Zhang-Server_TS4-scwrl costs 0 real_cost = 1.31455 Zhang-Server_TS4 costs 0 real_cost = 18.0222 Zhang-Server_TS3-scwrl costs 0 real_cost = -230.532 Zhang-Server_TS3 costs 0 real_cost = -222.404 Zhang-Server_TS2-scwrl costs 0 real_cost = -218.301 Zhang-Server_TS2 costs 0 real_cost = -211.174 Zhang-Server_TS1-scwrl costs 0 real_cost = -202.002 Zhang-Server_TS1 costs 0 real_cost = -198.499 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -203.66 UNI-EID_sfst_AL5 costs 0 real_cost = -118.925 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -171.096 UNI-EID_sfst_AL4 costs 0 real_cost = -98.9486 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -165.52 UNI-EID_sfst_AL3 costs 0 real_cost = -89.1494 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -99.7914 UNI-EID_sfst_AL2 costs 0 real_cost = -20.1792 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 53.0785 UNI-EID_sfst_AL1 costs 0 real_cost = 123.129 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -150.502 UNI-EID_expm_TS1 costs 0 real_cost = -84.7693 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -187.922 UNI-EID_bnmx_TS5 costs 0 real_cost = -83.6249 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -184.608 UNI-EID_bnmx_TS4 costs 0 real_cost = -104.754 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -178.477 UNI-EID_bnmx_TS3 costs 0 real_cost = -95.1077 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -104.599 UNI-EID_bnmx_TS2 costs 0 real_cost = -26.8986 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 44.1706 UNI-EID_bnmx_TS1 costs 0 real_cost = 118.837 SPARKS2_TS5-scwrl costs 0 real_cost = -14.4041 SPARKS2_TS5 costs 0 real_cost = -12.7813 SPARKS2_TS4-scwrl costs 0 real_cost = -21.9342 SPARKS2_TS4 costs 0 real_cost = -21.1769 SPARKS2_TS3-scwrl costs 0 real_cost = -207.398 SPARKS2_TS3 costs 0 real_cost = -209.473 SPARKS2_TS2-scwrl costs 0 real_cost = -241.289 SPARKS2_TS2 costs 0 real_cost = -234.699 SPARKS2_TS1-scwrl costs 0 real_cost = -114.917 SPARKS2_TS1 costs 0 real_cost = -112.142 SP4_TS5-scwrl costs 0 real_cost = -79.4949 SP4_TS5 costs 0 real_cost = -85.1497 SP4_TS4-scwrl costs 0 real_cost = -53.4467 SP4_TS4 costs 0 real_cost = -45.7051 SP4_TS3-scwrl costs 0 real_cost = -130.275 SP4_TS3 costs 0 real_cost = -128.622 SP4_TS2-scwrl costs 0 real_cost = -208.996 SP4_TS2 costs 0 real_cost = -208.073 SP4_TS1-scwrl costs 0 real_cost = -214.592 SP4_TS1 costs 0 real_cost = -206.406 SP3_TS5-scwrl costs 0 real_cost = -16.2156 SP3_TS5 costs 0 real_cost = -4.6881 SP3_TS4-scwrl costs 0 real_cost = -6.41718 SP3_TS4 costs 0 real_cost = -10.4322 SP3_TS3-scwrl costs 0 real_cost = -130.275 SP3_TS3 costs 0 real_cost = -128.622 SP3_TS2-scwrl costs 0 real_cost = -208.996 SP3_TS2 costs 0 real_cost = -208.073 SP3_TS1-scwrl costs 0 real_cost = -246.351 SP3_TS1 costs 0 real_cost = -240.823 SAM_T06_server_TS5-scwrl costs 0 real_cost = 75.6055 SAM_T06_server_TS5 costs 0 real_cost = 39.1671 SAM_T06_server_TS4-scwrl costs 0 real_cost = -102.359 SAM_T06_server_TS4 costs 0 real_cost = -107.326 SAM_T06_server_TS3-scwrl costs 0 real_cost = -182.356 SAM_T06_server_TS3 costs 0 real_cost = -190.577 SAM_T06_server_TS2-scwrl costs 0 real_cost = -209.98 SAM_T06_server_TS2 costs 0 real_cost = -213.416 SAM_T06_server_TS1-scwrl costs 0 real_cost = -152.019 SAM_T06_server_TS1 costs 0 real_cost = -149.489 SAM-T99_AL5-scwrl costs 0 real_cost = -172.832 SAM-T99_AL5 costs 0 real_cost = -102.059 SAM-T99_AL4-scwrl costs 0 real_cost = -149.832 SAM-T99_AL4 costs 0 real_cost = -66.6275 SAM-T99_AL3-scwrl costs 0 real_cost = -178.197 SAM-T99_AL3 costs 0 real_cost = -81.1442 SAM-T99_AL2-scwrl costs 0 real_cost = -187.031 SAM-T99_AL2 costs 0 real_cost = -114.128 SAM-T99_AL1-scwrl costs 0 real_cost = 42.1477 SAM-T99_AL1 costs 0 real_cost = 117.74 SAM-T02_AL5-scwrl costs 0 real_cost = -137.932 SAM-T02_AL5 costs 0 real_cost = -49.9952 SAM-T02_AL4-scwrl costs 0 real_cost = 46.3614 SAM-T02_AL4 costs 0 real_cost = 126.4 SAM-T02_AL3-scwrl costs 0 real_cost = -102.414 SAM-T02_AL3 costs 0 real_cost = -21.4455 SAM-T02_AL2-scwrl costs 0 real_cost = -192.724 SAM-T02_AL2 costs 0 real_cost = -115.216 SAM-T02_AL1-scwrl costs 0 real_cost = -212.874 SAM-T02_AL1 costs 0 real_cost = -121.521 ROKKY_TS5-scwrl costs 0 real_cost = -190.685 ROKKY_TS5 costs 0 real_cost = -183.655 ROKKY_TS4-scwrl costs 0 real_cost = -153.176 ROKKY_TS4 costs 0 real_cost = -148.76 ROKKY_TS3-scwrl costs 0 real_cost = -145.202 ROKKY_TS3 costs 0 real_cost = -143.958 ROKKY_TS2-scwrl costs 0 real_cost = -188.711 ROKKY_TS2 costs 0 real_cost = -182.799 ROKKY_TS1-scwrl costs 0 real_cost = -0.296974 ROKKY_TS1 costs 0 real_cost = 8.52699 ROBETTA_TS5-scwrl costs 0 real_cost = -172.254 ROBETTA_TS5 costs 0 real_cost = -177.961 ROBETTA_TS4-scwrl costs 0 real_cost = -207.933 ROBETTA_TS4 costs 0 real_cost = -204.539 ROBETTA_TS3-scwrl costs 0 real_cost = -191.216 ROBETTA_TS3 costs 0 real_cost = -190.718 ROBETTA_TS2-scwrl costs 0 real_cost = -211.408 ROBETTA_TS2 costs 0 real_cost = -211.186 ROBETTA_TS1-scwrl costs 0 real_cost = -195.633 ROBETTA_TS1 costs 0 real_cost = -191.433 RAPTOR_TS5-scwrl costs 0 real_cost = -197.292 RAPTOR_TS5 costs 0 real_cost = -199.431 RAPTOR_TS4-scwrl costs 0 real_cost = -180.795 RAPTOR_TS4 costs 0 real_cost = -177.392 RAPTOR_TS3-scwrl costs 0 real_cost = -191.589 RAPTOR_TS3 costs 0 real_cost = -189.837 RAPTOR_TS2-scwrl costs 0 real_cost = -200.544 RAPTOR_TS2 costs 0 real_cost = -192.001 RAPTOR_TS1-scwrl costs 0 real_cost = -170.457 RAPTOR_TS1 costs 0 real_cost = -172.572 RAPTORESS_TS5-scwrl costs 0 real_cost = -177.189 RAPTORESS_TS5 costs 0 real_cost = -178.924 RAPTORESS_TS4-scwrl costs 0 real_cost = -189.027 RAPTORESS_TS4 costs 0 real_cost = -188.462 RAPTORESS_TS3-scwrl costs 0 real_cost = -189.242 RAPTORESS_TS3 costs 0 real_cost = -176.742 RAPTORESS_TS2-scwrl costs 0 real_cost = -196.628 RAPTORESS_TS2 costs 0 real_cost = -191.095 RAPTORESS_TS1-scwrl costs 0 real_cost = -104.658 RAPTORESS_TS1 costs 0 real_cost = -112.847 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -246.351 RAPTOR-ACE_TS5 costs 0 real_cost = -240.823 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -227.759 RAPTOR-ACE_TS4 costs 0 real_cost = -221.266 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -192.689 RAPTOR-ACE_TS3 costs 0 real_cost = -187.185 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -203.825 RAPTOR-ACE_TS2 costs 0 real_cost = -197.621 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -232.093 RAPTOR-ACE_TS1 costs 0 real_cost = -228.304 Pmodeller6_TS5-scwrl costs 0 real_cost = -172.254 Pmodeller6_TS5 costs 0 real_cost = -177.961 Pmodeller6_TS4-scwrl costs 0 real_cost = -116.462 Pmodeller6_TS4 costs 0 real_cost = -119.588 Pmodeller6_TS3-scwrl costs 0 real_cost = -70.7509 Pmodeller6_TS3 costs 0 real_cost = -83.034 Pmodeller6_TS2-scwrl costs 0 real_cost = -225.247 Pmodeller6_TS2 costs 0 real_cost = -226.525 Pmodeller6_TS1-scwrl costs 0 real_cost = -211.408 Pmodeller6_TS1 costs 0 real_cost = -211.186 Phyre-2_TS5-scwrl costs 0 real_cost = -179.759 Phyre-2_TS5 costs 0 real_cost = -180.007 Phyre-2_TS4-scwrl costs 0 real_cost = -179.759 Phyre-2_TS4 costs 0 real_cost = -180.007 Phyre-2_TS3-scwrl costs 0 real_cost = -168.383 Phyre-2_TS3 costs 0 real_cost = -170.098 Phyre-2_TS2-scwrl costs 0 real_cost = -168.383 Phyre-2_TS2 costs 0 real_cost = -170.098 Phyre-2_TS1-scwrl costs 0 real_cost = -180.068 Phyre-2_TS1 costs 0 real_cost = -181.651 Phyre-1_TS1-scwrl costs 0 real_cost = -66.2581 Phyre-1_TS1 costs 0 real_cost = -78.0889 Pcons6_TS5-scwrl costs 0 real_cost = -165.227 Pcons6_TS5 costs 0 real_cost = -167.399 Pcons6_TS4-scwrl costs 0 real_cost = -184.431 Pcons6_TS4 costs 0 real_cost = -187.031 Pcons6_TS3-scwrl costs 0 real_cost = -175.535 Pcons6_TS3 costs 0 real_cost = -174.887 Pcons6_TS2-scwrl costs 0 real_cost = -189.251 Pcons6_TS2 costs 0 real_cost = -191.674 Pcons6_TS1-scwrl costs 0 real_cost = -225.247 Pcons6_TS1 costs 0 real_cost = -226.525 PROTINFO_TS5-scwrl costs 0 real_cost = -189.787 PROTINFO_TS5 costs 0 real_cost = -188.56 PROTINFO_TS4-scwrl costs 0 real_cost = -181.42 PROTINFO_TS4 costs 0 real_cost = -186.692 PROTINFO_TS3-scwrl costs 0 real_cost = -192.044 PROTINFO_TS3 costs 0 real_cost = -195.086 PROTINFO_TS2-scwrl costs 0 real_cost = -232.476 PROTINFO_TS2 costs 0 real_cost = -242.876 PROTINFO_TS1-scwrl costs 0 real_cost = -177.035 PROTINFO_TS1 costs 0 real_cost = -178.687 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -192.6 PROTINFO-AB_TS5 costs 0 real_cost = -187.43 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -189.806 PROTINFO-AB_TS4 costs 0 real_cost = -189.903 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -189.787 PROTINFO-AB_TS3 costs 0 real_cost = -188.56 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -194.16 PROTINFO-AB_TS2 costs 0 real_cost = -195.826 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -204.713 PROTINFO-AB_TS1 costs 0 real_cost = -205.405 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -176.951 NN_PUT_lab_TS1 costs 0 real_cost = -104.171 MetaTasser_TS5-scwrl costs 0 real_cost = -160.979 MetaTasser_TS5 costs 0 real_cost = -151.819 MetaTasser_TS4-scwrl costs 0 real_cost = -47.591 MetaTasser_TS4 costs 0 real_cost = -43.2258 MetaTasser_TS3-scwrl costs 0 real_cost = -154.399 MetaTasser_TS3 costs 0 real_cost = -145.052 MetaTasser_TS2-scwrl costs 0 real_cost = -153.934 MetaTasser_TS2 costs 0 real_cost = -154.589 MetaTasser_TS1-scwrl costs 0 real_cost = -165.033 MetaTasser_TS1 costs 0 real_cost = -148.255 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 26.2112 Ma-OPUS-server_TS5 costs 0 real_cost = 31.8092 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -32.4213 Ma-OPUS-server_TS4 costs 0 real_cost = -22.6913 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -133.769 Ma-OPUS-server_TS3 costs 0 real_cost = -136.269 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -209.049 Ma-OPUS-server_TS2 costs 0 real_cost = -206 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -224.092 Ma-OPUS-server_TS1 costs 0 real_cost = -213.473 LOOPP_TS5-scwrl costs 0 real_cost = -176.408 LOOPP_TS5 costs 0 real_cost = -179.531 LOOPP_TS4-scwrl costs 0 real_cost = -60.9044 LOOPP_TS4 costs 0 real_cost = -64.1058 LOOPP_TS3-scwrl costs 0 real_cost = 84.1997 LOOPP_TS3 costs 0 real_cost = 79.9021 LOOPP_TS2-scwrl costs 0 real_cost = -112.646 LOOPP_TS2 costs 0 real_cost = -110.254 LOOPP_TS1-scwrl costs 0 real_cost = -169.04 LOOPP_TS1 costs 0 real_cost = -165.574 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -149.032 Huber-Torda-Server_TS5 costs 0 real_cost = -94.3419 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 52.8552 Huber-Torda-Server_TS4 costs 0 real_cost = 101.938 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -161.135 Huber-Torda-Server_TS3 costs 0 real_cost = -92.4365 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -100.33 Huber-Torda-Server_TS2 costs 0 real_cost = -46.6825 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -132.355 Huber-Torda-Server_TS1 costs 0 real_cost = -74.1025 HHpred3_TS1-scwrl costs 0 real_cost = 14.1696 HHpred3_TS1 costs 0 real_cost = 22.4461 HHpred2_TS1-scwrl costs 0 real_cost = 14.1696 HHpred2_TS1 costs 0 real_cost = 22.4461 HHpred1_TS1-scwrl costs 0 real_cost = -211.708 HHpred1_TS1 costs 0 real_cost = -207.858 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -116.649 GeneSilicoMetaServer_TS5 costs 0 real_cost = -114.843 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -182.039 GeneSilicoMetaServer_TS4 costs 0 real_cost = -171.887 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -197.658 GeneSilicoMetaServer_TS3 costs 0 real_cost = -199.379 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -222.954 GeneSilicoMetaServer_TS2 costs 0 real_cost = -223.124 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -213.712 GeneSilicoMetaServer_TS1 costs 0 real_cost = -214.934 FUNCTION_TS5-scwrl costs 0 real_cost = -183.306 FUNCTION_TS5 costs 0 real_cost = -169.776 FUNCTION_TS4-scwrl costs 0 real_cost = -110.336 FUNCTION_TS4 costs 0 real_cost = -100.023 FUNCTION_TS3-scwrl costs 0 real_cost = -176.918 FUNCTION_TS3 costs 0 real_cost = -176.44 FUNCTION_TS2-scwrl costs 0 real_cost = -202.847 FUNCTION_TS2 costs 0 real_cost = -191.078 FUNCTION_TS1-scwrl costs 0 real_cost = -205.188 FUNCTION_TS1 costs 0 real_cost = -200.172 FUGUE_AL5-scwrl costs 0 real_cost = 34.3342 FUGUE_AL5 costs 0 real_cost = 113.873 FUGUE_AL4-scwrl costs 0 real_cost = 11.8632 FUGUE_AL4 costs 0 real_cost = 104.801 FUGUE_AL3-scwrl costs 0 real_cost = 193.157 FUGUE_AL3 costs 0 real_cost = 193.157 FUGUE_AL2-scwrl costs 0 real_cost = 65.3136 FUGUE_AL2 costs 0 real_cost = 139.737 FUGUE_AL1-scwrl costs 0 real_cost = -177.47 FUGUE_AL1 costs 0 real_cost = -84.8073 FUGMOD_TS5-scwrl costs 0 real_cost = -9.39312 FUGMOD_TS5 costs 0 real_cost = -16.54 FUGMOD_TS4-scwrl costs 0 real_cost = 2.81206 FUGMOD_TS4 costs 0 real_cost = 1.44606 FUGMOD_TS3-scwrl costs 0 real_cost = 77.2624 FUGMOD_TS3 costs 0 real_cost = 82.0954 FUGMOD_TS2-scwrl costs 0 real_cost = 19.9477 FUGMOD_TS2 costs 0 real_cost = 29.1803 FUGMOD_TS1-scwrl costs 0 real_cost = -206.761 FUGMOD_TS1 costs 0 real_cost = -206.25 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 296.006 FPSOLVER-SERVER_TS5 costs 0 real_cost = 299.972 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 299.276 FPSOLVER-SERVER_TS4 costs 0 real_cost = 302.638 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 290.631 FPSOLVER-SERVER_TS3 costs 0 real_cost = 296.243 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 299.466 FPSOLVER-SERVER_TS2 costs 0 real_cost = 303.79 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 280.04 FPSOLVER-SERVER_TS1 costs 0 real_cost = 284.091 FORTE2_AL5-scwrl costs 0 real_cost = 221.6 FORTE2_AL5 costs 0 real_cost = 221.6 FORTE2_AL4-scwrl costs 0 real_cost = 70.1375 FORTE2_AL4 costs 0 real_cost = 173.063 FORTE2_AL3-scwrl costs 0 real_cost = 159.254 FORTE2_AL3 costs 0 real_cost = 250.159 FORTE2_AL2-scwrl costs 0 real_cost = 103.853 FORTE2_AL2 costs 0 real_cost = 197.824 FORTE2_AL1-scwrl costs 0 real_cost = -116.302 FORTE2_AL1 costs 0 real_cost = -32.4358 FORTE1_AL5-scwrl costs 0 real_cost = 53.9153 FORTE1_AL5 costs 0 real_cost = 147.3 FORTE1_AL4-scwrl costs 0 real_cost = 180.988 FORTE1_AL3-scwrl costs 0 real_cost = 78.2052 FORTE1_AL3 costs 0 real_cost = 176.216 FORTE1_AL2-scwrl costs 0 real_cost = 161.562 FORTE1_AL2 costs 0 real_cost = 248.402 FORTE1_AL1-scwrl costs 0 real_cost = -116.302 FORTE1_AL1 costs 0 real_cost = -32.4358 FOLDpro_TS5-scwrl costs 0 real_cost = 165.798 FOLDpro_TS5 costs 0 real_cost = 173.051 FOLDpro_TS4-scwrl costs 0 real_cost = 105.572 FOLDpro_TS4 costs 0 real_cost = 119.667 FOLDpro_TS3-scwrl costs 0 real_cost = 168.121 FOLDpro_TS3 costs 0 real_cost = 172.252 FOLDpro_TS2-scwrl costs 0 real_cost = 195.606 FOLDpro_TS2 costs 0 real_cost = 205.336 FOLDpro_TS1-scwrl costs 0 real_cost = -237.525 FOLDpro_TS1 costs 0 real_cost = -235.815 FAMS_TS5-scwrl costs 0 real_cost = -189.626 FAMS_TS5 costs 0 real_cost = -190.872 FAMS_TS4-scwrl costs 0 real_cost = -210.466 FAMS_TS4 costs 0 real_cost = -210.934 FAMS_TS3-scwrl costs 0 real_cost = -200.334 FAMS_TS3 costs 0 real_cost = -208.27 FAMS_TS2-scwrl costs 0 real_cost = -246.976 FAMS_TS2 costs 0 real_cost = -234.784 FAMS_TS1-scwrl costs 0 real_cost = -239.659 FAMS_TS1 costs 0 real_cost = -232.261 FAMSD_TS5-scwrl costs 0 real_cost = -112.55 FAMSD_TS5 costs 0 real_cost = -105.921 FAMSD_TS4-scwrl costs 0 real_cost = -189.626 FAMSD_TS4 costs 0 real_cost = -190.872 FAMSD_TS3-scwrl costs 0 real_cost = -149.341 FAMSD_TS3 costs 0 real_cost = -149.336 FAMSD_TS2-scwrl costs 0 real_cost = -169.088 FAMSD_TS2 costs 0 real_cost = -175.351 FAMSD_TS1-scwrl costs 0 real_cost = -170.416 FAMSD_TS1 costs 0 real_cost = -167.14 Distill_TS5-scwrl costs 0 real_cost = 286.258 Distill_TS4-scwrl costs 0 real_cost = 289.877 Distill_TS3-scwrl costs 0 real_cost = 288.535 Distill_TS2-scwrl costs 0 real_cost = 282.757 Distill_TS1-scwrl costs 0 real_cost = 276.602 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 77.4977 CaspIta-FOX_TS5 costs 0 real_cost = 80.4157 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 95.7267 CaspIta-FOX_TS4 costs 0 real_cost = 97.5772 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 46.3614 CaspIta-FOX_TS3 costs 0 real_cost = 42.9425 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -105.141 CaspIta-FOX_TS2 costs 0 real_cost = -107.528 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -96.3743 CaspIta-FOX_TS1 costs 0 real_cost = -96.6929 CPHmodels_TS1-scwrl costs 0 real_cost = -149.024 CPHmodels_TS1 costs 0 real_cost = -161.642 CIRCLE_TS5-scwrl costs 0 real_cost = -210.466 CIRCLE_TS5 costs 0 real_cost = -210.934 CIRCLE_TS4-scwrl costs 0 real_cost = -196.937 CIRCLE_TS4 costs 0 real_cost = -195.621 CIRCLE_TS3-scwrl costs 0 real_cost = -191.377 CIRCLE_TS3 costs 0 real_cost = -196.297 CIRCLE_TS2-scwrl costs 0 real_cost = -200.334 CIRCLE_TS2 costs 0 real_cost = -208.27 CIRCLE_TS1-scwrl costs 0 real_cost = -246.976 CIRCLE_TS1 costs 0 real_cost = -234.784 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -202.736 Bilab-ENABLE_TS5 costs 0 real_cost = -202.736 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -220.94 Bilab-ENABLE_TS4 costs 0 real_cost = -220.94 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -222.46 Bilab-ENABLE_TS3 costs 0 real_cost = -222.46 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -212.784 Bilab-ENABLE_TS2 costs 0 real_cost = -212.784 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -192.101 Bilab-ENABLE_TS1 costs 0 real_cost = -192.101 BayesHH_TS1-scwrl costs 0 real_cost = 9.66955 BayesHH_TS1 costs 0 real_cost = 21.893 ABIpro_TS5-scwrl costs 0 real_cost = 176.569 ABIpro_TS5 costs 0 real_cost = 176.569 ABIpro_TS4-scwrl costs 0 real_cost = 174.478 ABIpro_TS4 costs 0 real_cost = 177.242 ABIpro_TS3-scwrl costs 0 real_cost = 230.399 ABIpro_TS3 costs 0 real_cost = 230.399 ABIpro_TS2-scwrl costs 0 real_cost = 214.499 ABIpro_TS2 costs 0 real_cost = 214.499 ABIpro_TS1-scwrl costs 0 real_cost = 185.657 ABIpro_TS1 costs 0 real_cost = 182.319 3Dpro_TS5-scwrl costs 0 real_cost = 231.663 3Dpro_TS5 costs 0 real_cost = 242.6 3Dpro_TS4-scwrl costs 0 real_cost = 124.849 3Dpro_TS4 costs 0 real_cost = 126.431 3Dpro_TS3-scwrl costs 0 real_cost = 126.108 3Dpro_TS3 costs 0 real_cost = 124.483 3Dpro_TS2-scwrl costs 0 real_cost = 127.412 3Dpro_TS2 costs 0 real_cost = 136.565 3Dpro_TS1-scwrl costs 0 real_cost = -255.784 3Dpro_TS1 costs 0 real_cost = -259.802 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 45.0262 3D-JIGSAW_TS5 costs 0 real_cost = 50.4306 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -150.277 3D-JIGSAW_TS4 costs 0 real_cost = -154.016 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -156.392 3D-JIGSAW_TS3 costs 0 real_cost = -157.965 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -153.469 3D-JIGSAW_TS2 costs 0 real_cost = -153.195 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 48.0169 3D-JIGSAW_TS1 costs 0 real_cost = 64.6575 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -150.072 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -166.079 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -35.1542 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -46.4303 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -107.248 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -119.938 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -164.185 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -178.663 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -171.558 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -187.77 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -175.496 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -176.059 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -175.482 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -175.826 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -164.436 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -166.419 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -212.145 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -213.191 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -219.098 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -222.463 T0317.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -227.359 T0317.try2-opt2.pdb.gz costs 0 real_cost = -230.698 T0317.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -232.278 T0317.try2-opt1.pdb.gz costs 0 real_cost = -230.524 T0317.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -233.407 T0317.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -233.825 T0317.try1-opt2.pdb.gz costs 0 real_cost = -231.542 T0317.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -235.872 T0317.try1-opt1.pdb.gz costs 0 real_cost = -224.105 T0317.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -225.781 ../model5.ts-submitted costs 0 real_cost = -185.6 ../model4.ts-submitted costs 0 real_cost = -192.419 ../model3.ts-submitted costs 0 real_cost = -207.789 ../model2.ts-submitted costs 0 real_cost = -230.792 ../model1.ts-submitted costs 0 real_cost = -230.696 align5 costs 0 real_cost = 31.1803 align4 costs 0 real_cost = 5.384 align3 costs 0 real_cost = -186.269 align2 costs 0 real_cost = -185.88 align1 costs 0 real_cost = -208.479 T0317.try1-opt2.pdb costs 0 real_cost = -231.522 model5-scwrl costs 0 real_cost = -177.59 model5.ts-submitted costs 0 real_cost = -185.6 model4-scwrl costs 0 real_cost = -184.268 model4.ts-submitted costs 0 real_cost = -192.419 model3-scwrl costs 0 real_cost = -203.821 model3.ts-submitted costs 0 real_cost = -207.789 model2-scwrl costs 0 real_cost = -234.366 model2.ts-submitted costs 0 real_cost = -230.792 model1-scwrl costs 0 real_cost = -232.921 model1.ts-submitted costs 0 real_cost = -230.695 T0317_1.real.pdb costs 0 real_cost = -875.6 # command:CPU_time= 505.928 sec, elapsed time= 817.323 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_1.rdb mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory make: [decoys/evaluate_1.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty