# List of top-scoring protein chains for T0317.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m3gA 145 1.32e-23 c.45.1.1 84783 1mkp 144 3.81e-23 1vhrA c.45.1.1 32654 1wrmA 165 4.31e-23 2fh7A 595 2.81e-22 2c7sA 313 7.82e-22 1vhrA 184 1.37e-21 1vhrA c.45.1.1 32651 1yz4A 160 1.80e-21 1larA 575 2.44e-21 1larA c.45.1.2,c.45.1.2 32693,32694 1gwz 299 3.62e-21 2shpA c.45.1.2 32685 2b3oA 532 5.72e-21 2b49A 287 9.17e-21 2cfvA 316 1.02e-20 1p15A 253 1.31e-20 c.45.1.2 93894 1j4xA 184 1.37e-20 c.45.1.1 66392 1yfoA 302 1.85e-20 2shpA c.45.1.2 32681 2ahsA 295 3.17e-20 1rpmA 278 4.51e-20 2shpA c.45.1.2 32679 1fprA 284 5.09e-20 2shpA c.45.1.2 59949 2shpA 525 1.15e-19 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2gjtA 295 1.28e-19 2fjmA 310 1.40e-19 2azrA 299 1.64e-19 1bzjA 297 1.65e-19 1pty c.45.1.2 32667 1oemX 321 1.65e-19 c.45.1.2 86916 2f71A 298 1.65e-19 1nwlA 298 1.69e-19 c.45.1.2 86300 2f6fA 302 1.70e-19 1q6nA 310 1.70e-19 c.45.1.2 95984 2g59A 297 1.82e-19 1c86A 298 2.06e-19 1pty c.45.1.2 32668 1c83A 298 2.46e-19 1pty c.45.1.2 32660 1l8gA 321 2.48e-19 c.45.1.2 73689 1bzcA 321 2.70e-19 1pty c.45.1.2 32670 1bzhA 298 2.71e-19 1pty c.45.1.2 32664 1lqfA 295 3.23e-19 c.45.1.2 74187 1ohcA 348 3.30e-19 c.45.1.1,c.45.1.1 87009,87010 1d5rA 324 3.79e-19 1d5rA b.7.1.1,c.45.1.1 23181,32697 1gfyA 298 4.38e-19 1pty c.45.1.2 32666 1a5y 330 8.15e-19 1pty c.45.1.2 32673 1ygrA 610 9.71e-19 2a3kA 296 1.12e-18 1pa1A 310 1.20e-18 c.45.1.2 94404 1zc0A 309 1.21e-18 2gp0A 309 1.55e-18 1aax 321 1.66e-18 1pty c.45.1.2 32657 1eeoA 321 1.67e-18 1pty c.45.1.2 32655 1i57A 310 1.72e-18 1pty c.45.1.2 61772 1ptuA 321 1.74e-18 1pty c.45.1.2 32675 1l8kA 314 1.98e-18 c.45.1.2 73691 1ptvA 321 2.52e-18 1pty c.45.1.2 32665 1oheA 348 3.37e-18 c.45.1.1,c.45.1.1 87013,87014 1g1fA 298 3.61e-18 1pty c.45.1.2 32662 1wchA 315 4.43e-18 2a8bA 283 4.65e-18 1jlnA 297 8.46e-18 1pty c.45.1.2 63172 2bzlA 325 9.72e-18 1rxdA 159 3.08e-17 1zckA 154 3.11e-17 1x24A 180 3.22e-17 1xm2A 173 1.46e-16 2bijA 305 1.73e-16 1v3aA 173 2.37e-16 1r6hA 172 2.39e-16 c.45.1.1 97150 1zclA 180 2.73e-16 2bv5A 282 1.49e-15 2cjzA 305 1.89e-15 2c46A 241 3.42e-15 1i9sA 210 5.98e-15 1i9sA c.45.1.1 62099 1xriA 151 5.15e-14 1yn9A 169 6.81e-14 1fpzA 212 1.18e-13 1fpzA c.45.1.1 59976 1pa9A 284 3.36e-08 c.45.1.2 94411 1yptA 305 3.49e-08 1ytw c.45.1.2 32686 1qz0A 306 3.49e-08 c.45.1.2 96607 1xxvA 306 3.49e-08 1g4wR 383 4.01e-08 1g4uS a.24.11.1,c.45.1.2 16644,32692 1yts 278 2.73e-07 1ytw c.45.1.2 32690 1lyvA 306 5.18e-07 c.45.1.2 74348 1xxpA 306 5.18e-07 1ywfA 296 6.12e-07 1u24A 337 1.36e-04 2f46A 156 8.67e-04 1zsqA 528 7.57e-02 1lw3A 657 7.98e-02 b.55.1.8,c.45.1.3 91152,91153 1tw3A 360 1.82e+00 a.4.5.29,c.66.1.12 107373,107374 1z6tA 591 2.15e+00 1oi4A 193 2.28e+00 c.23.16.2 87047 1zxxA 319 2.32e+00 1g6oA 330 2.67e+00 1g6oA c.37.1.11 32430 1sqgA 429 2.75e+00 a.79.1.3,c.66.1.38 105912,105913 1eufA 227 3.71e+00 5ptp b.47.1.2 59506 1uirA 314 4.00e+00 c.66.1.17 99429 1qlwA 328 4.91e+00 1qlwA c.69.1.15 34722 1jhzA 289 5.38e+00 c.93.1.1 66731 1jfsA 340 5.57e+00 a.35.1.5,c.93.1.1 66650,66651 2pucA 340 5.79e+00 1qpzA a.35.1.5,c.93.1.1 17094,35684 2pugA 340 6.08e+00 1qpzA a.35.1.5,c.93.1.1 17088,35683 1dbqA 289 6.42e+00 1qpzA c.93.1.1 35666 1vpwA 340 6.67e+00 1qpzA a.35.1.5,c.93.1.1 17087,35680 1qpzA 340 6.67e+00 1qpzA a.35.1.5,c.93.1.1 17097,35673 1qqbA 340 6.73e+00 1qpzA a.35.1.5,c.93.1.1 17099,35674 1jftA 340 6.81e+00 a.35.1.5,c.93.1.1 66652,66653 1ojrA 274 7.34e+00 c.74.1.1 93147 2fsxA 148 7.51e+00 1kyzA 365 7.59e+00 a.4.5.29,c.66.1.12 73312,73313 1qlwB 328 7.77e+00 1qlwA c.69.1.15 34723 1jh9A 340 7.78e+00 a.35.1.5,c.93.1.1 66710,66711 1gt7A 274 8.24e+00 c.74.1.1 70398 1ylhA 560 9.34e+00 1npyA 271 1.04e+01 c.2.1.7,c.58.1.5 85995,85996 1zoiA 276 1.04e+01 1vjzA 341 1.27e+01 c.1.8.3 100838 1z34A 235 1.50e+01 1l3iA 192 1.93e+01 c.66.1.22 77676 2clpA 347 2.02e+01 1gveA 327 2.05e+01 c.1.7.1 70597 1vljA 407 2.13e+01 e.22.1.2 108832 1a88A 275 2.16e+01 1brt c.69.1.12 34707 1zsyA 357 2.22e+01 1gveB 327 2.37e+01 c.1.7.1 70598 1ys7A 233 2.37e+01 2c4kA 370 2.50e+01 1q0gA 117 2.66e+01 a.24.22.1 104428 1vimA 200 2.67e+01 c.80.1.3 100758 1tmy 120 2.74e+01 1dbwA c.23.1.1 31083 1rbaA 466 2.80e+01 1burA c.1.14.1,d.58.9.1 29390,39296 1qxnA 137 2.88e+01 c.46.1.3 96537 1u0sY 118 2.90e+01 c.23.1.1 107566 5rubA 490 2.91e+01 1burA c.1.14.1,d.58.9.1 29382,39288 2fnaA 357 2.91e+01 1mzpA 217 2.95e+01 e.24.1.1 79710 9rubA 466 2.96e+01 1burA c.1.14.1,d.58.9.1 29386,39292 1rrsA 369 3.09e+01 a.96.1.2,d.113.1.3 97800,97801 1tq1A 129 3.28e+01 c.46.1.3 107198 1bxdA 161 3.32e+01 1bxdA d.122.1.3 41111 1vcnA 550 3.58e+01 c.23.16.1,c.37.1.10 108506,108507 2d5cA 263 3.63e+01 4nll 138 3.66e+01 5nul c.23.5.1 31203 1m3sA 186 3.67e+01 c.80.1.3 78573 1vpaA 234 3.82e+01 1vivA 197 3.85e+01 c.80.1.3 100775 1m6yA 301 3.92e+01 a.60.13.1,c.66.1.23 78716,78717 1ftxA 387 3.94e+01 b.49.2.2,c.1.6.1 76191,76192 1bd0A 388 3.94e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 2sfpA 388 3.94e+01 1bd0A b.49.2.2,c.1.6.1 26484,28646 1skz 119 3.95e+01 1skz g.3.15.1,g.3.15.1 44366,44367 1xqlA 388 3.97e+01 1xdwA 331 3.97e+01 2b8nA 429 4.00e+01 1vcoA 550 4.11e+01 c.23.16.1,c.37.1.10 108508,108509 2a8yA 270 4.26e+01 2b9lA 394 4.34e+01 2c1hA 328 4.49e+01 1p0iA 529 4.56e+01 c.69.1.1 93867 1bj8 109 4.56e+01 1bquA b.1.2.1 22070 1t9kA 347 4.57e+01 c.124.1.5 106721 1ihuA 589 4.74e+01 c.37.1.10,c.37.1.10 62394,62395 1jeoA 180 4.75e+01 c.80.1.3 66611 1yyaA 250 4.82e+01 1p1tA 104 5.10e+01 d.58.7.1 93899 1dxgA 36 5.12e+01 1dxgA g.41.5.2 45247 1k6mA 432 5.17e+01 c.37.1.7,c.60.1.4 77275,77276 2up1A 183 5.31e+01 1ha1 d.58.7.1,d.58.7.1 39151,39152 1yv9A 264 5.39e+01 1ju6A 313 5.41e+01 d.117.1.1 63289 1h7sA 365 5.42e+01 d.14.1.3,d.122.1.2 65705,65706 1ea6A 364 5.42e+01 d.14.1.3,d.122.1.2 64871,64872 1pcfA 66 5.43e+01 1pcfA d.18.1.1 38142 1xg4A 295 5.64e+01 1m5yA 408 5.67e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1rh9A 373 5.70e+01 1up1 182 5.81e+01 1ha1 d.58.7.1,d.58.7.1 39149,39150 1q2xA 371 5.97e+01 c.2.1.3,d.81.1.1 104503,104504 1wzcA 249 5.97e+01 1ha1 184 5.99e+01 1ha1 d.58.7.1,d.58.7.1 39147,39148 1w6sA 599 6.00e+01 1mumA 295 6.10e+01 c.1.12.7 85108 1pgzA 195 6.11e+01 d.58.7.1,d.58.7.1 94697,94698 1l3kA 196 6.21e+01 d.58.7.1,d.58.7.1 73539,73540 1pu2A 371 6.32e+01 c.2.1.3,d.81.1.1 104308,104309 1urhA 280 6.34e+01 c.46.1.2,c.46.1.2 99829,99830 1h4jA 599 6.34e+01 4aahA b.70.1.1 60590 1ps8A 371 6.35e+01 c.2.1.3,d.81.1.1 104304,104305 1sjiA 350 6.37e+01 2fctA 313 6.37e+01 1h4iA 599 6.38e+01 4aahA b.70.1.1 60586 1kw3B 292 6.45e+01 d.32.1.3,d.32.1.3 77549,77550 1nn6A 228 6.58e+01 b.47.1.2 85893 1t31A 226 6.59e+01 1pqpA 371 6.59e+01 c.2.1.3,d.81.1.1 104286,104287 1pr3A 371 6.60e+01 c.2.1.3,d.81.1.1 104300,104301 1klt 226 6.61e+01 5ptp b.47.1.2 26300 2b3wA 168 6.62e+01 1ru8A 232 6.65e+01 c.26.2.1 97849 2dldA 337 6.69e+01 1dxy c.2.1.4,c.23.12.1 30099,31359 1nwhA 371 6.78e+01 c.2.1.3,d.81.1.1 92233,92234 1nwcA 371 6.78e+01 c.2.1.3,d.81.1.1 92229,92230 1h3fA 432 6.93e+01 c.26.1.1,d.66.1.4 76631,76632 1ozaA 371 6.98e+01 c.2.1.3,d.81.1.1 104045,104046 1jwoA 97 7.07e+01 d.93.1.1 63310 1phwA 284 7.09e+01 c.1.10.4 104155 1ohvA 472 7.09e+01 c.67.1.4 93031 1g7uA 284 7.10e+01 1d9eA c.1.10.4 60334 2tscA 264 7.16e+01 1bkpA d.117.1.1 40952 1ireB 228 7.38e+01 b.34.4.4 76770 1ve3A 227 7.43e+01 1pquA 371 7.49e+01 c.2.1.3,d.81.1.1 104288,104289 2cqhA 93 7.61e+01 1ugpB 226 7.63e+01 b.34.4.4 107832 1xi1A 575 7.71e+01 1bm9A 122 7.97e+01 1bm9A a.4.5.7 16116 1vi7A 217 7.99e+01 d.14.1.11,d.58.11.2 100740,100741 1sxgA 280 8.06e+01 1hzwA 290 8.08e+01 1bkpA d.117.1.1 61464 1uanA 227 8.10e+01 c.134.1.1 99135 2arhA 203 8.11e+01 1ypvA 313 8.18e+01 1hw4A 355 8.35e+01 1bkpA d.117.1.1 41054 1zj8A 566 8.39e+01 1o17A 345 8.53e+01 a.46.2.1,c.27.1.1 80765,80766 2f57A 317 8.66e+01 1smkA 326 8.82e+01 2bg9B 370 8.83e+01 1pjhA 280 8.89e+01 c.14.1.3 94761 1avqA 228 8.97e+01 1avqA c.52.1.13 33326 2ftnA 264 8.99e+01