CreatePredAlphaCost pred_alpha2k alpha11 T0316.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0316.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0316.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 15 way_back 5 dry5 20 dry6.5 25 dry8 20 dry12 10 \ phobic_fit 2 \ sidechain 10 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 60 backbone_clashes 2 \ break 200 \ pred_alpha2k 2 \ pred_alpha04 3 \ pred_alpha06 4 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ maybe_metal 0.5 \ missing_atoms 1