# List of top-scoring protein chains for T0316.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 8.37e-09 1gpmA 525 1.63e-07 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wy5A 317 3.43e-06 2c5sA 413 3.69e-06 1ni5A 433 3.50e-05 c.26.2.5,d.229.1.1 80533,80534 1vl2A 421 7.31e-04 c.26.2.1,d.210.1.1 108708,108709 1korA 400 9.74e-03 c.26.2.1,d.210.1.1 72824,72825 2d13A 227 1.18e-02 1ru8A 232 4.00e-02 c.26.2.1 97849 1q15A 503 5.98e-02 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 6.57e-02 c.26.2.1,d.153.1.1 78457,78458 1kqpA 271 1.11e-01 c.26.2.1 72883 1k92A 455 1.62e-01 c.26.2.1,d.210.1.1 68325,68326 1ct9A 553 4.60e-01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1b7yB 785 1.06e+00 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1wxiA 275 1.26e+00 1o89A 345 2.12e+00 b.35.1.2,c.2.1.1 92644,92645 1eal 127 2.83e+00 1hmt b.60.1.2 27227 2a2pA 129 6.21e+00 2bxrA 527 9.21e+00 2bpqA 373 1.00e+01 1zvwA 378 1.01e+01 1v6fA 151 1.14e+01 d.109.1.2 108395 1ok0A 74 1.19e+01 b.5.1.1 93191 1wqaA 455 1.24e+01 1w17A 263 1.24e+01 1r89A 437 1.26e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1w1b1 257 1.36e+01 1ny1A 240 1.36e+01 c.6.2.3 86395 1sh0A 510 1.41e+01 e.8.1.4 98876 1ntyA 311 1.44e+01 a.87.1.1,b.55.1.1 103873,103874 1d2eA 397 1.45e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2ax3A 502 1.45e+01 2a22A 215 1.46e+01 1iq4A 179 1.46e+01 1iq4A d.77.1.1 62641 1xrtA 467 1.47e+01 1wh0A 134 1.55e+01 1rc9A 221 1.57e+01 1gof 639 1.57e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1k3iA 656 1.58e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1xb2A 409 1.60e+01 1bkf 107 1.66e+01 1fkj d.26.1.1 38382 1fkl 107 1.70e+01 1fkj d.26.1.1 38423 1hm7A 336 1.71e+01 a.128.1.4 76719 2ff4A 388 1.71e+01 2b43A 526 1.74e+01 2azqA 311 1.74e+01 1t2xA 639 1.83e+01 b.1.18.2,b.18.1.1,b.69.1.1 106292,106293,106294 1wy1A 172 1.84e+01 1pswA 348 1.91e+01 c.87.1.7 88287 1pmzA 86 1.94e+01 a.39.1.10 104195 1fkj 107 2.13e+01 1fkj d.26.1.1 38384 1iruE 241 2.15e+01 d.153.1.4 71356 1tcoC 107 2.15e+01 1fkj d.26.1.1 38426 1kn1A 160 2.18e+01 a.1.1.3 77455 1dekA 241 2.25e+01 1dekA c.37.1.1 31842 1ps1A 337 2.42e+01 1ps1A a.128.1.4 19450 1bn7A 294 2.44e+01 1bn6A c.69.1.8 34677 1awcB 153 2.49e+01 1bd8 d.211.1.1 19156 1mkeA 152 2.62e+01 b.55.1.4 79231 1eymA 107 2.68e+01 1fkj d.26.1.1 38403 1dl7L 109 2.70e+01 1mfa b.1.1.1 20498 2adr 60 2.73e+01 2adr g.37.1.1,g.37.1.1 45030,45031 1po5A 476 2.84e+01 a.104.1.1 94963 1wlfA 179 2.87e+01 b.52.2.3,d.31.1.1 109396,109397 1bl4A 107 2.89e+01 1fkj d.26.1.1 38393 2dg4A 107 2.89e+01 1xmxA 385 2.93e+01 1zn8A 180 2.93e+01 1cqwA 295 2.94e+01 1b6g c.69.1.8 34679 1x6hA 86 2.94e+01 1zczA 464 3.25e+01 1g13A 162 3.27e+01 1g13A b.95.1.1 60194 1allA 160 3.29e+01 1qgwC a.1.1.3 15647 2dg9A 107 3.30e+01 1suoA 476 3.33e+01 a.104.1.1 106026 2b59B 172 3.40e+01 1bccA 446 3.51e+01 1be3A d.185.1.1,d.185.1.1 58946,58947 1mioA 533 3.62e+01 1qguA c.92.2.3 35601 2f4iA 197 3.65e+01 1gkpA 458 3.73e+01 b.92.1.3,c.1.9.6 70231,70232 1wwrA 171 3.80e+01 1z1vA 80 3.94e+01 2b7aA 293 4.02e+01 7odcA 424 4.02e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1ulzA 451 4.11e+01 b.84.2.1,c.30.1.1,d.142.1.2 99575,99576,99577 1qcrA 446 4.15e+01 1be3A d.185.1.1,d.185.1.1 59025,59026 1ppjA 446 4.15e+01 d.185.1.1,d.185.1.1 104252,104253 2ag9A 164 4.15e+01 1n8pA 393 4.17e+01 c.67.1.3 80304 1sqbA 480 4.24e+01 d.185.1.1,d.185.1.1 105890,105891 1ydxA 406 4.32e+01 2ag4A 164 4.36e+01 1b33A 160 4.45e+01 1qgwC a.1.1.3 15649 1qtnA 164 4.47e+01 1pauA c.17.1.1 30999 1n4kA 381 4.50e+01 a.118.22.1,b.42.6.1 79992,79993 2aamA 309 4.51e+01 1szrA 425 4.54e+01 2todA 425 4.54e+01 7odcA b.49.2.3,c.1.6.1 26489,28651 1n4nA 47 4.57e+01 g.3.7.5 91620 1f3tA 425 4.59e+01 7odcA b.49.2.3,c.1.6.1 26493,28655 1njjA 425 4.59e+01 b.49.2.3,c.1.6.1 91905,91906 1o5wA 534 4.63e+01 c.3.1.2,d.16.1.5 92520,92521 1uqvA 85 4.68e+01 a.60.1.2 99798 1zv1A 65 4.69e+01 1rsgA 516 4.76e+01 1frn 314 4.77e+01 1fnc b.43.4.2,c.25.1.1 25631,31521 1xcbA 211 4.90e+01 a.4.5.38,c.2.1.12 109552,109553 1xjdA 345 5.07e+01 1wlyA 333 5.21e+01 1yhfA 115 5.24e+01 1lf1A 308 5.30e+01 c.1.8.3 73877 1nnhA 294 5.38e+01 d.104.1.1 92005 1hey 128 5.54e+01 3chy c.23.1.1 31061 1o1uA 127 5.71e+01 b.60.1.2 81076 1qduA 153 5.79e+01 1pauA c.17.1.1 31000 1fyvA 161 5.84e+01 1fyvA c.23.2.1 31127 2aj3A 213 5.92e+01 1dq3A 454 5.92e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1ff3A 211 6.01e+01 1fvaA d.58.28.1 39411 1es7A 116 6.17e+01 2tgi g.17.1.2 44786 1t2aA 375 6.20e+01 c.2.1.2 99078 1rewA 114 6.27e+01 g.17.1.2 97334 1j83A 180 6.43e+01 b.18.1.12 66430 1sg0A 230 6.50e+01 1zx1A 231 6.52e+01 2bzsA 236 6.58e+01 1db3A 372 6.97e+01 1db3A c.2.1.2 29813 1gnd 447 7.04e+01 1gnd c.3.1.3,d.16.1.6 30423,37987 1v7pA 134 7.12e+01 d.169.1.1 108406 1nezG 128 7.18e+01 b.1.1.1 85592 8tfvA 21 7.18e+01 j.3.1.2 46071 1yy5A 513 7.20e+01 1bqhG 129 7.21e+01 1cd8 b.1.1.1 19715 1d5tA 433 7.22e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 2atpA 122 7.25e+01 2ajfE 180 7.28e+01 1fx8A 281 7.34e+01 f.19.1.1 43651 1lv0A 449 7.42e+01 c.3.1.3,d.16.1.6 91130,91131 1z45A 699 7.45e+01 1cqqA 180 7.63e+01 1cqqA b.47.1.4 26422 1x9nA 688 7.68e+01 2a8nA 144 7.75e+01 1cjbA 231 7.76e+01 1qk3A c.61.1.1 34079 1lvwA 295 7.99e+01 c.68.1.6 84723 2f5qA 274 8.02e+01 2f5nA 274 8.04e+01 1xg5A 279 8.07e+01 1r2zA 274 8.14e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1l1zA 274 8.16e+01 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1kyhA 276 8.59e+01 c.72.1.4 73222 1pg7W 210 8.65e+01 b.1.1.1,b.1.1.2 94682,94683 2dd8S 202 8.71e+01 1ocwL 120 8.73e+01 b.1.1.1 92780 1liiA 363 8.80e+01 c.72.1.1 73921 1tykA 34 8.88e+01 g.3.6.2 107462 2cokA 113 8.90e+01 1cicA 214 8.95e+01 8fabA b.1.1.1,b.1.1.2 19964,21024