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Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0316 AAK74304, Streptococcus pneumoniae, 373 res
    • gi|83569546|ref|ZP_00920998.1|_1:365 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Shigella dysenteriae 1012]
    • gi|75511661|ref|ZP_00734308.1|_1:365 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli 53638]
    • gi|75179245|ref|ZP_00699263.1|_1:365 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Shigella boydii BS512]
    • gi|75209213|ref|ZP_00709460.1|_1:365 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli B171]
    • gi|75239631|ref|ZP_00723598.1|_1:365 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli F11]
    • gi|75830143|ref|ZP_00759427.1|_6:368 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Vibrio cholerae MO10]
    • gi|75826429|ref|ZP_00755864.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Vibrio cholerae O395]
    • gi|75817331|ref|ZP_00747783.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Vibrio cholerae V52]
    • gi|75823486|ref|ZP_00752984.1|_6:368 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Vibrio cholerae RC385]
    • gi|75819721|ref|ZP_00749789.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Vibrio cholerae V51]
    • gi|77635911|ref|ZP_00797990.1|_21:386 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Yersinia pestis Angola]
    • gi|53728682|ref|ZP_00131757.2|_18:382 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Haemophilus somnus 2336]
    • gi|53692257|ref|ZP_00123536.2|_2:357 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Haemophilus somnus 129PT]
    • gi|75854522|ref|ZP_00762211.1|_2:336 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Vibrio sp. Ex25]
    • gi|53731980|ref|ZP_00153456.2|_6:365 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Rickettsia rickettsii]
    • gi|73969262|ref|XP_538325.2|_1:396 PREDICTED: similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 isoform a [Canis familiaris]
    • gi|62652886|ref|XP_343307.2|_1:396 PREDICTED: similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 [Rattus norvegicus]
    • gi|55771666|dbj|BAD70107.1|_1:393 argininosuccinate synthetase [Thermus thermophilus HB8]
    • gi|34921440|sp|P59846|ASSY_THET8 Argininosuccinate synthase (Citrulline--aspartate ligase) [Taxonomy]
    • gi|55980253|ref|YP_143550.1| argininosuccinate synthetase [Thermus thermophilus HB8]
    • gi|30749372|pdb|1KH3|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Inhibitor [Taxonomy]
    • gi|30749371|pdb|1KH3|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Inhibitor [Taxonomy]
    • gi|30749370|pdb|1KH3|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Inhibitor [Taxonomy]
    • gi|30749369|pdb|1KH3|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Inhibitor [Taxonomy]
    • gi|30749328|pdb|1J21|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Atp And Citrulline [Taxonomy]
    • gi|30749327|pdb|1J21|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Atp And Citrulline [Taxonomy]
    • gi|30749326|pdb|1J21|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Atp And Citrulline [Taxonomy]
    • gi|30749325|pdb|1J21|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Atp And Citrulline [Taxonomy]
    • gi|30749324|pdb|1J20|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Product [Taxonomy]
    • gi|30749323|pdb|1J20|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Product [Taxonomy]
    • gi|30749322|pdb|1J20|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Product [Taxonomy]
    • gi|30749321|pdb|1J20|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Product [Taxonomy]
    • gi|30749320|pdb|1J1Z|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Substrate [Taxonomy]
    • gi|30749319|pdb|1J1Z|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Substrate [Taxonomy]
    • gi|30749318|pdb|1J1Z|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Substrate [Taxonomy]
    • gi|30749317|pdb|1J1Z|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Substrate [Taxonomy]
    • gi|20150953|pdb|1KOR|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Inhibitors [Taxonomy]
    • gi|20150952|pdb|1KOR|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Inhibitors [Taxonomy]
    • gi|20150951|pdb|1KOR|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Inhibitors [Taxonomy]
    • gi|20150950|pdb|1KOR|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Inhibitors [Taxonomy]
    • gi|20150781|pdb|1KH2|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Atp [Taxonomy]
    • gi|20150780|pdb|1KH2|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Atp [Taxonomy]
    • gi|20150779|pdb|1KH2|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Atp [Taxonomy]
    • gi|20150778|pdb|1KH2|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase In Complex With Atp [Taxonomy]
    • gi|20150777|pdb|1KH1|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase [Taxonomy]
    • gi|20150776|pdb|1KH1|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase [Taxonomy]
    • gi|20150775|pdb|1KH1|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase [Taxonomy]
    • gi|20150774|pdb|1KH1|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase [Taxonomy]
    • gi|73967748|ref|XP_860201.1|_1:405 PREDICTED: similar to Argininosuccinate synthase (Citrulline--aspartate ligase) isoform 5 [Canis familiaris]
    • gi|73967742|ref|XP_849895.1| PREDICTED: similar to Argininosuccinate synthase (Citrulline--aspartate ligase) isoform 3 [Canis familiaris]
    • gi|48853937|ref|ZP_00308102.1|_1:362 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Cytophaga hutchinsonii]
    • gi|52696142|pdb|1VL2|D_13:415 Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780) From Thermotoga Maritima At 1.65 A Resolution [Taxonomy]
    • gi|52696141|pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780) From Thermotoga Maritima At 1.65 A Resolution [Taxonomy]
    • gi|52696140|pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780) From Thermotoga Maritima At 1.65 A Resolution [Taxonomy]
    • gi|52696139|pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780) From Thermotoga Maritima At 1.65 A Resolution [Taxonomy]
    • gi|62425242|ref|ZP_00380378.1|_1:390 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Brevibacterium linens BL2]
    • gi|68539939|ref|ZP_00579706.1|_286:551 GMP synthase, C-terminal:GMP synthase, N-terminal [Sphingopyxis alaskensis RB2256]
    • gi|145342|gb|AAA23482.1|_5:416 argininosuccinate synthetase (argG; E.C. 6.8.4.5) [Taxonomy]
    • gi|20664156|pdb|1KP3|A_4:415 Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase In Complex With Atp And Citrulline [Taxonomy]
    • gi|20664153|pdb|1KP2|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase In Complex With Atp [Taxonomy]
    • gi|17943194|pdb|1K97|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase In Complex With Aspartate And Citrulline [Taxonomy]
    • gi|17943198|pdb|1K92|A Chain A, Crystal Structure Of Uncomplexed E. Coli Argininosuccinate Synthetase [Taxonomy]
    • gi|171085|gb|AAA34437.1|_1:368 argininosuccinate synthetase (ARG1; E.C. 6.8.4.5) [Taxonomy]