# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vl2A 421 5.93e-37 c.26.2.1,d.210.1.1 108708,108709 1wy5A 317 6.01e-29 1k92A 455 4.37e-23 c.26.2.1,d.210.1.1 68325,68326 1gpmA 525 1.29e-21 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1xngA 268 2.94e-21 1kqpA 271 1.31e-16 c.26.2.1 72883 1wxiA 275 2.13e-12 1ct9A 553 3.17e-12 1ct9A c.26.2.1,d.153.1.1 31616,41834 2d13A 227 2.71e-09 1m1zA 513 2.15e-08 c.26.2.1,d.153.1.1 78457,78458 1sur 215 3.18e-07 1sur c.26.2.2 31620 1q15A 503 4.28e-07 c.26.2.1,d.153.1.1 95538,95539 1uc8A 280 6.10e-04 c.30.1.6,d.142.1.7 99165,99166 2blnA 305 2.10e-03 1qczA 169 3.38e-03 1qczA c.23.8.1 31276 1jmvA 141 1.45e-02 c.26.2.4 66897 1u11A 182 2.53e-02 c.23.8.1 107576 1v4vA 376 3.84e-02 c.87.1.3 100313 1ii7A 333 4.92e-02 1ii7A d.159.1.4 62415 1xmpA 170 5.52e-02 1dv1A 449 7.01e-02 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1vr6A 350 7.55e-02 1o4vA 183 1.22e-01 c.23.8.1 86628 1jf9A 408 1.24e-01 1c0nA c.67.1.3 62931 1vl5A 260 1.35e-01 c.66.1.41 108720 1v6tA 255 1.60e-01 1af7 274 1.76e-01 1af7 a.58.1.1,c.66.1.8 17928,34203 1f0kA 364 2.08e-01 1f0kA c.87.1.2 35465 1zczA 464 2.23e-01 1ls1A 295 2.36e-01 a.24.13.1,c.37.1.10 78170,78171 1bc5A 269 2.66e-01 1af7 a.58.1.1,c.66.1.8 17929,34204 1j8mF 297 3.15e-01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1cb0A 283 3.48e-01 1cb0A c.56.2.1 33790 1wr2A 238 3.54e-01 2a2pA 129 3.63e-01 2f46A 156 3.75e-01 2c1xA 456 4.26e-01 1gc0A 398 4.52e-01 c.67.1.3 70168 2f5gA 133 5.29e-01 1wjgA 137 6.31e-01 1nmoA 247 7.67e-01 c.135.1.1 91980 1gsoA 431 8.15e-01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2cunA 410 8.62e-01 1iirA 415 9.41e-01 1iirA c.87.1.5 62453 1vp8A 201 1.01e+00 1zccA 248 1.06e+00 1ve3A 227 1.10e+00 1vcoA 550 1.20e+00 c.23.16.1,c.37.1.10 108508,108509 1c0pA 363 1.22e+00 1an9A c.4.1.2,d.16.1.3 30647,37934 1fo8A 343 1.55e+00 1foaA c.68.1.10 59927 1zzmA 259 1.66e+00 1jljA 189 1.82e+00 c.57.1.1 63169 2abqA 306 1.89e+00 1hdoA 206 1.98e+00 1he2A c.2.1.2 60965 1dl5A 317 2.00e+00 1dl5A c.66.1.7,d.197.1.1 64720,64721 1z3eA 132 2.11e+00 1udc 338 2.13e+00 1xel c.2.1.2 29785 1rvgA 305 2.17e+00 c.1.10.2 97920 2gm3A 175 2.22e+00 1vjfA 180 2.23e+00 d.116.1.1 100809 1thfD 253 2.26e+00 1thfD c.1.2.1 28535 1fyeA 229 2.27e+00 1fyeA c.23.16.4 31477 2czcA 334 2.31e+00 1k77A 260 2.35e+00 c.1.15.5 72096 1wo8A 126 2.44e+00 2culA 232 2.45e+00 8abp 306 2.48e+00 8abp c.93.1.1 35647 2cvjA 180 2.67e+00 2dri 271 2.71e+00 2dri c.93.1.1 35637 1s3eA 520 2.73e+00 c.3.1.2,d.16.1.5 98426,98427 1kao 167 2.79e+00 1ctqA c.37.1.8 32014 1sqhA 312 3.16e+00 d.108.1.5 98966 1r3eA 309 3.21e+00 b.122.1.1,d.265.1.2 96907,96908 1ri5A 298 3.33e+00 c.66.1.34 97502 1zxxA 319 3.42e+00 1ae9A 179 3.45e+00 1ae9A d.163.1.1 42153 1nv8A 284 3.49e+00 c.66.1.30 86224 1tuoA 464 3.56e+00 1iow 306 3.70e+00 1iow c.30.1.2,d.142.1.1 31713,41481 1o97C 264 3.79e+00 c.26.2.3 81232 1xxlA 239 3.79e+00 1vg0A 650 3.98e+00 c.3.1.3,d.16.1.6 108596,108597 1trb 320 4.00e+00 1trb c.3.1.5,c.3.1.5 30529,30530 2a8yA 270 4.22e+00 1vkmA 297 4.41e+00 c.138.1.1 108670 1q74A 303 4.54e+00 c.134.1.1 96019 1w2xA 758 4.74e+00 c.14.1.4,c.14.1.4 109134,109135 1uluA 261 4.93e+00 1j31A 262 4.93e+00 d.160.1.2 90808 1ex2A 189 4.98e+00 1ex2A c.51.4.2 33225 1xdwA 331 5.18e+00 1siqA 392 5.18e+00 a.29.3.1,e.6.1.1 105585,105586 1uyrA 737 5.26e+00 c.14.1.4,c.14.1.4 100188,100189 1tif 78 5.66e+00 1tif d.15.8.1 37836 1efvA 315 5.82e+00 1efvA c.26.2.3,c.31.1.2 31633,31728 1b93A 152 5.86e+00 1b93A c.24.1.2 31507 1ufkA 254 6.07e+00 c.66.1.39 99340 1l7aA 318 6.46e+00 c.69.1.25 77772 1zrn 232 6.46e+00 1qq5A c.108.1.1 43323 1ja1A 622 6.46e+00 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1x1zA 252 6.53e+00 1ihuA 589 6.69e+00 c.37.1.10,c.37.1.10 62394,62395 1ir6A 424 6.83e+00 c.107.1.2 71342 1bf6A 291 6.91e+00 1pscA c.1.9.3 29065 1w0mA 226 7.17e+00 c.1.1.1 109027 1seiA 130 7.33e+00 1seiA d.140.1.1 41463 2d5cA 263 7.44e+00 1r6fA 310 7.56e+00 e.46.1.1 97149 1ve1A 304 7.71e+00 1km4A 247 7.96e+00 c.1.2.3 72740 1agi 125 8.10e+00 7rsa d.5.1.1 37303 1m32A 366 8.14e+00 c.67.1.3 78508 1vljA 407 8.33e+00 e.22.1.2 108832 1l7mA 211 8.36e+00 c.108.1.4 73664 1z15A 344 8.53e+00 2a25A 193 8.61e+00 1wu7A 434 8.83e+00 1wloA 136 8.85e+00 1neyA 247 8.86e+00 c.1.1.1 80449 2bwkA 121 8.95e+00 2gf9A 189 9.13e+00 2tpsA 227 9.16e+00 2tpsA c.1.3.1 28591 1i39A 225 9.43e+00 1ekeA c.55.3.1 61585 2pgd 482 9.51e+00 2pgd a.100.1.1,c.2.1.6 18778,30190 1byfA 125 9.87e+00 1byfA d.169.1.1 42419 1y1pA 342 9.99e+00 1efvB 255 1.00e+01 1efvB c.26.2.3 31634 1eljA 381 1.00e+01 4mbp c.94.1.1 35791 1vlmA 219 1.02e+01 c.66.1.41 108836 1uarA 285 1.04e+01 c.46.1.2,c.46.1.2 107762,107763 1ux6A 350 1.07e+01 b.29.1.16,g.75.1.1 100145,100146 2cdnA 201 1.07e+01 2cveA 191 1.10e+01 1jtvA 327 1.14e+01 c.2.1.2 84230 1pkhA 204 1.17e+01 b.85.4.1 94832 2napA 723 1.18e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1ekeA 230 1.22e+01 1ekeA c.55.3.1 33572 1yhfA 115 1.24e+01 1qsgA 265 1.24e+01 1eny c.2.1.2 29935 2avyM 117 1.25e+01 1i58A 189 1.26e+01 1b3qA d.122.1.3 61773 1n2sA 299 1.32e+01 c.2.1.2 79857 1gvfA 286 1.36e+01 c.1.10.2 70599 1w85A 368 1.38e+01 2cq2A 114 1.38e+01 1hqkA 154 1.40e+01 c.16.1.1 65902 1m40A 263 1.41e+01 e.3.1.1 74437 1nffA 260 1.43e+01 c.2.1.2 80457 1ryp1 222 1.45e+01 1ryp1 2f8mA 244 1.47e+01 2fsxA 148 1.58e+01 2fyxA 143 1.62e+01 1xccA 220 1.64e+01 1l3iA 192 1.66e+01 c.66.1.22 77676 1gjwA 637 1.67e+01 b.71.1.1,c.1.8.1 60582,60583 1vhqA 232 1.69e+01 c.23.16.2 100696 1xeaA 323 1.73e+01 c.2.1.3,d.81.1.5 109572,109573 1iy8A 267 1.74e+01 c.2.1.2 83774 1vheA 373 1.75e+01 b.49.3.1,c.56.5.4 100669,100670 1vzwA 244 1.78e+01 1g0oA 283 1.79e+01 1ybvA c.2.1.2 60181 1ekqA 272 1.83e+01 1c3qA c.72.1.2 34941 1qg8A 255 1.87e+01 1qg8A c.68.1.1 34505 1yxcA 292 1.87e+01 1sr9A 644 1.92e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1grj 158 1.92e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1x8hA 228 1.95e+01 1vdc 333 1.98e+01 1trb c.3.1.5,c.3.1.5 30545,30546 1rd5A 262 1.99e+01 2cy2A 174 2.03e+01 1ceo 343 2.05e+01 1ceo c.1.8.3 28808 1vhcA 224 2.05e+01 c.1.10.1 100661 1sbyA 254 2.11e+01 1wh5A 80 2.13e+01 1mo0A 275 2.15e+01 c.1.1.1 79329 1vl4A 447 2.18e+01 d.283.1.1 108718 1b7yA 350 2.19e+01 1pysA d.104.1.1 40776 1szoA 257 2.20e+01 c.14.1.3 106164 1wd7A 261 2.22e+01 1p3dA 475 2.26e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1w96A 554 2.29e+01 1wx1A 335 2.30e+01 1cjxA 357 2.30e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1rreA 200 2.31e+01 d.14.1.10 97791 1vbuA 328 2.34e+01 1m6yA 301 2.38e+01 a.60.13.1,c.66.1.23 78716,78717 1v8fA 276 2.41e+01 c.26.1.4 100503 1wtaA 275 2.42e+01 2aq8A 269 2.42e+01 1yixA 265 2.45e+01 1aua 296 2.47e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1uzmA 247 2.49e+01 1lqaA 346 2.51e+01 c.1.7.1 84674 1nuuA 252 2.52e+01 c.26.1.3 86209 2fz4A 237 2.54e+01 1xyzA 347 2.60e+01 1taxA c.1.8.3 28804 1t3iA 420 2.61e+01 c.67.1.3 106354 1upaA 573 2.62e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1y5eA 169 2.65e+01 1vhoA 346 2.69e+01 b.49.3.1,c.56.5.4 100694,100695 2f02A 323 2.75e+01 1uzeA 589 2.75e+01 d.92.1.5 108174 1u55A 188 2.78e+01 d.278.1.1 107677 1o69A 394 2.78e+01 c.67.1.4 92560 1s6lA 212 2.78e+01 1x1rA 178 2.79e+01 1wznA 252 2.81e+01 2a61A 145 2.81e+01 1h05A 146 2.91e+01 c.23.13.1 76433 1zemA 262 2.93e+01 1l0bA 229 2.93e+01 c.15.1.3,c.15.1.3 73391,73392 1rds 105 2.95e+01 9rnt d.1.1.4 36236 1npyA 271 2.99e+01 c.2.1.7,c.58.1.5 85995,85996 2anuA 255 3.01e+01 1q7hA 153 3.01e+01 b.122.1.1,d.17.6.2 96042,96043 2fywA 267 3.01e+01 2flsA 132 3.03e+01 1w41A 101 3.06e+01 1ydmA 187 3.09e+01 1y7lA 316 3.15e+01 2avdA 219 3.17e+01 1mdoA 393 3.22e+01 c.67.1.4 79013 1wcwA 261 3.25e+01 1ad1A 266 3.27e+01 1aj2 c.1.21.1 29668 1iyeA 309 3.30e+01 e.17.1.1 83786 1yreA 197 3.31e+01 1s50A 259 3.31e+01 1uuhA 159 3.32e+01 d.169.1.4 100008 2d1yA 256 3.32e+01 1snnA 227 3.34e+01 d.115.1.2 105821 1zmaA 118 3.35e+01 1x7oA 287 3.38e+01 1lbvA 252 3.38e+01 e.7.1.1 73813 1ehiA 377 3.46e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1zy9A 564 3.46e+01 1zh2A 121 3.47e+01 1dcfA 136 3.47e+01 1dcfA c.23.1.2 31124 1u6tA 121 3.49e+01 1dbhA 354 3.50e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1e19A 314 3.52e+01 1b7bA c.73.1.1 34967 1a7tA 232 3.53e+01 1a7tA d.157.1.1 42041 1xw8A 252 3.54e+01 1x42A 232 3.59e+01 1dxy 333 3.63e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1tedA 393 3.64e+01 c.95.1.2 106807 1y14A 187 3.65e+01 2ez6A 221 3.66e+01 1twdA 256 3.67e+01 c.1.30.1 107397 1yhtA 367 3.71e+01 1yksA 440 3.75e+01 2fnaA 357 3.76e+01 1zud2 66 3.79e+01 1uf3A 228 3.87e+01 d.159.1.6 99317 1x6vA 630 3.89e+01 1tx2A 297 3.91e+01 c.1.21.1 107420 1ek6A 348 3.92e+01 1xel c.2.1.2 29800 1yt5A 258 3.93e+01 1v98A 140 3.93e+01 1o08A 221 3.95e+01 c.108.1.6 86525 1ifc 132 3.96e+01 b.60.1.2 27173 1q6zA 528 4.09e+01 2a13A 166 4.11e+01 1gxuA 91 4.12e+01 d.58.10.1 76378 2cklA 108 4.18e+01 1x8gA 227 4.20e+01 1efpB 252 4.22e+01 1efvB c.26.2.3 31636 1j2rA 199 4.24e+01 c.33.1.3 90788 1ujnA 348 4.25e+01 e.22.1.1 99460 1y0eA 223 4.25e+01 2bmfA 451 4.27e+01 1wleA 501 4.28e+01 1i3cA 149 4.28e+01 c.23.1.1 71112 1tljA 213 4.30e+01 d.282.1.1 107126 1zuwA 272 4.32e+01 1k3iA 656 4.32e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1jqlB 140 4.33e+01 c.37.1.20 63234 1yovA 537 4.33e+01 1dqaA 467 4.35e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 2aukA 190 4.38e+01 1r0vA 305 4.39e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1o5kA 306 4.59e+01 c.1.10.1 92504 1s2oA 244 4.59e+01 1ooyA 481 4.60e+01 c.124.1.3,c.124.1.2 93388,93389 1qyaA 307 4.71e+01 d.21.1.2,d.21.1.2 104653,104654 1m3qA 317 4.74e+01 a.96.1.3,d.129.1.2 91184,91185 1ryoA 327 4.77e+01 c.94.1.2 98108 1wg8A 285 4.77e+01 1iukA 140 4.82e+01 c.2.1.8 83712 1wekA 217 4.84e+01 1fmtA 314 4.86e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1qqqA 264 4.92e+01 1bkpA d.117.1.1 40931 1ynpA 317 4.93e+01 1g57A 217 4.93e+01 1g57A d.115.1.2 60253 1mkzA 172 4.97e+01 c.57.1.1 84998 1geqA 248 4.97e+01 2tysA c.1.2.4 28589 2c6cA 707 5.05e+01 1qhxA 178 5.07e+01 1qhsA c.37.1.3 31936 1lqtA 456 5.10e+01 c.3.1.1,c.4.1.1 74198,74199 1j7xA 302 5.18e+01 c.14.1.2 66425 1s57A 153 5.18e+01 1lrzA 426 5.22e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1vkiA 181 5.23e+01 d.116.1.1 108664 1pz1A 333 5.27e+01 c.1.7.1 95390 1r5lA 262 5.27e+01 a.5.3.1,c.13.1.1 97099,97100 1flcB 175 5.29e+01 1flcB h.3.1.1 45716 2gh1A 301 5.33e+01 1kb9D 246 5.35e+01 a.3.1.3,f.23.11.1 77317,77318 1yvhA 329 5.38e+01 1muwA 386 5.47e+01 c.1.15.3 79495 1u69A 163 5.48e+01 d.32.1.7 107699 1jwiB 125 5.51e+01 d.169.1.1 67384 1crzA 403 5.52e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 2bfwA 200 5.53e+01 1v84A 253 5.56e+01 c.68.1.7 108419 2g6bA 180 5.57e+01 1ars 396 5.57e+01 1ajsA c.67.1.1 34287 1d8bA 81 5.63e+01 1d8bA a.60.8.1 18094 2gasA 307 5.63e+01 1st9A 143 5.63e+01 c.47.1.10 98987 1wmiA 90 5.67e+01 1mnaA 298 5.67e+01 c.69.1.22 79322 2cc0A 195 5.69e+01 1n7kA 234 5.69e+01 c.1.10.1 85374 1xwyA 264 5.83e+01 2b5eA 504 5.84e+01 1wyxA 69 5.84e+01 1yyaA 250 5.86e+01 1fthA 122 5.86e+01 d.150.1.2 60028 1iloA 77 5.92e+01 c.47.1.1 66205 1n0wA 243 5.93e+01 c.37.1.11 79772 1m65A 245 5.95e+01 c.6.3.1 84847 1w8sA 263 5.96e+01 1p4cA 380 5.97e+01 c.1.4.1 94100 1xesA 413 6.01e+01 1rxyA 253 6.21e+01 c.56.2.1 98065 1hyeA 313 6.27e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1wbhA 214 6.39e+01 1mk4A 157 6.43e+01 d.108.1.1 84979 1jbeA 128 6.43e+01 3chy c.23.1.1 62845 1rqbA 539 6.47e+01 a.5.7.2,c.1.10.5 105057,105058 1vb5A 276 6.57e+01 1rypI 222 6.57e+01 d.153.1.4 41877 2f9lA 199 6.59e+01 1xvaA 292 6.60e+01 1xvaA c.66.1.5 34183 1qzzA 374 6.61e+01 a.4.5.29,c.66.1.12 96719,96720 1y10A 407 6.62e+01 1p5tA 127 6.67e+01 b.55.1.2 94148 1i24A 404 6.68e+01 c.2.1.2 83663 1gudA 288 6.70e+01 c.93.1.1 83326 1sdjA 310 6.71e+01 d.21.1.2,d.21.1.2 98807,98808 1wyuA 438 6.72e+01 1b5pA 385 6.74e+01 c.67.1.1 90403 1uj2A 252 6.81e+01 c.37.1.6 99452 1tqhA 247 6.87e+01 c.69.1.29 107225 1i0lA 221 6.88e+01 c.61.1.1 71096 1j6oA 268 6.94e+01 c.1.9.12 77088 1jihA 531 7.01e+01 d.240.1.1,e.8.1.7 90374,90375 1zwwA 256 7.06e+01 1kicA 339 7.08e+01 c.70.1.1 72510 1b7yB 785 7.09e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 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