# List of top-scoring protein chains for T0316.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1korA 400 1.04e-49 c.26.2.1,d.210.1.1 72824,72825 1vl2A 421 1.30e-45 c.26.2.1,d.210.1.1 108708,108709 1gpmA 525 8.46e-41 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wy5A 317 5.96e-31 1ni5A 433 1.53e-30 c.26.2.5,d.229.1.1 80533,80534 1k92A 455 2.48e-22 c.26.2.1,d.210.1.1 68325,68326 2c5sA 413 2.35e-17 1xngA 268 3.82e-15 1kqpA 271 2.95e-06 c.26.2.1 72883 2d13A 227 1.96e-05 1ru8A 232 1.98e-05 c.26.2.1 97849 1wxiA 275 7.53e-05 1zunA 325 1.07e-04 1m1zA 513 2.76e-03 c.26.2.1,d.153.1.1 78457,78458 1r89A 437 8.48e-03 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1sur 215 1.75e-02 1sur c.26.2.2 31620 1nmeA 146 1.10e-01 c.17.1.1 85874 1rhjA 147 1.14e-01 c.17.1.1 97481 1i3oA 175 1.24e-01 1pauA c.17.1.1 61603 1ulzA 451 1.83e-01 b.84.2.1,c.30.1.1,d.142.1.2 99575,99576,99577 1q15A 503 2.85e-01 c.26.2.1,d.153.1.1 95538,95539 1ct9A 553 3.27e-01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1jmvA 141 5.62e-01 c.26.2.4 66897 1vp8A 201 8.06e-01 1znnA 325 1.09e+00 1qx3A 257 2.56e+00 c.17.1.1 96515 1nmsA 249 2.59e+00 c.17.1.1 85879 1v6tA 255 2.62e+00 1zccA 248 2.82e+00 1sr9A 644 2.84e+00 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1qyaA 307 3.44e+00 d.21.1.2,d.21.1.2 104653,104654 1x42A 232 4.56e+00 1cp3A 277 4.87e+00 1pauA c.17.1.1 30992 1j6oA 268 4.94e+00 c.1.9.12 77088 1yo8A 634 5.28e+00 1umhA 184 5.28e+00 b.18.1.21 99605 1qy9A 297 5.67e+00 d.21.1.2,d.21.1.2 104645,104646 2a2pA 129 5.71e+00 2bpqA 373 5.90e+00 1j6uA 469 6.44e+00 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1zvwA 378 6.61e+00 1yrwA 302 7.40e+00 1umiA 184 7.97e+00 b.18.1.21 99606 1uc9A 280 8.44e+00 c.30.1.6,d.142.1.7 99169,99170 1flcB 175 8.92e+00 1flcB h.3.1.1 45716 2ffhA 425 9.05e+00 1ng1 a.24.13.1,a.36.1.1,c.37.1.10 16965,17122,32276 1wjgA 137 9.05e+00 1uc8A 280 9.27e+00 c.30.1.6,d.142.1.7 99165,99166 2blnA 305 9.56e+00 1e08A 371 9.91e+00 i.4.1.1 45914 1zzmA 259 1.14e+01 2ng1 293 1.20e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1cd9A 175 1.25e+01 1bgc a.26.1.1 16815 1rhgA 174 1.25e+01 1bgc a.26.1.1 16812 1ffh 294 1.28e+01 1ng1 a.24.13.1,c.37.1.10 16960,32271 2c7fA 513 1.33e+01 1cb0A 283 1.35e+01 1cb0A c.56.2.1 33790 1zh2A 121 1.41e+01 2bdqA 224 1.45e+01 1rj9B 300 1.48e+01 a.24.13.1,c.37.1.10 97555,97556 1sdjA 310 1.49e+01 d.21.1.2,d.21.1.2 98807,98808 1d6nA 214 1.50e+01 1qk3A c.61.1.1 34077 1gx3A 284 1.51e+01 d.3.1.5 70678 1w6fA 278 1.53e+01 1f76A 336 1.59e+01 c.1.4.1 76160 1gnc 178 1.63e+01 1bgc a.26.1.1 16821 1vddA 228 1.64e+01 e.49.1.1 108519 1ng1 294 1.64e+01 1ng1 a.24.13.1,c.37.1.10 16961,32272 2a1hA 365 1.66e+01 1ls1A 295 1.75e+01 a.24.13.1,c.37.1.10 78170,78171 2fiyA 309 1.76e+01 1s7jA 262 1.78e+01 d.21.1.2 98647 1jmxA 494 1.82e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1jpnA 296 1.84e+01 a.24.13.1,c.37.1.10 67039,67040 1o87A 297 1.90e+01 a.24.13.1,c.37.1.10 92640,92641 1p4sA 181 2.11e+01 c.37.1.1 94117 1pssM 296 2.22e+01 6prcM f.26.1.1 43501 1iq4A 179 2.31e+01 1iq4A d.77.1.1 62641 1oizA 278 2.31e+01 a.5.3.1,c.13.1.1 93079,93080 1l0bA 229 2.41e+01 c.15.1.3,c.15.1.3 73391,73392 1aijS 301 2.55e+01 6prcM f.26.1.1 43465 1de3A 150 2.93e+01 1aqzA d.1.1.3 36240 1qovM 307 2.93e+01 6prcM f.26.1.1 43456 1anxA 319 2.94e+01 1avc a.65.1.1 18161 1shsA 147 2.96e+01 1shsA b.15.1.1 23675 1umxM 307 2.98e+01 f.26.1.1 107964 1rcwA 231 2.99e+01 a.132.1.4 97299 1ipaA 274 3.04e+01 c.116.1.1,d.79.3.3 71254,71255 1avhA 320 3.05e+01 1avc a.65.1.1 18159 1iu9A 111 3.05e+01 c.78.2.1 90694 1ystM 305 3.06e+01 6prcM f.26.1.1 43510 1uumA 372 3.08e+01 c.1.4.1 100010 1zbxB 141 3.09e+01 1jgyM 307 3.13e+01 f.26.1.1 63029 1jgxM 307 3.18e+01 f.26.1.1 63025 1rzhM 307 3.19e+01 f.26.1.1 98165 1ps9A 671 3.22e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1pstM 296 3.25e+01 6prcM f.26.1.1 43504 2a7mA 250 3.26e+01 1dv3M 307 3.30e+01 6prcM f.26.1.1 43477 2br6A 252 3.31e+01 1ry5M 307 3.34e+01 f.26.1.1 98089 1idpA 172 3.35e+01 d.17.4.1 83685 1nbwB 117 3.35e+01 c.51.3.2 80396 1suwA 249 3.41e+01 e.52.1.1 106027 2afbA 351 3.44e+01 1d7aA 161 3.46e+01 1qczA c.23.8.1 31277 1m4iA 181 3.49e+01 d.108.1.1 74457 1z9jB 307 3.50e+01 1qw9A 502 3.51e+01 b.71.1.2,c.1.8.3 96466,96467 1pz3A 502 3.51e+01 b.71.1.2,c.1.8.3 95396,95397 1hve 319 3.56e+01 1avc a.65.1.1 18156 1xmgC 388 3.56e+01 1g2qA 187 3.60e+01 c.61.1.1 65117 1e6dM 307 3.66e+01 6prcM f.26.1.1 43459 1qczA 169 3.68e+01 1qczA c.23.8.1 31276 1k6lM 314 3.73e+01 f.26.1.1 72087 1dt2A 245 3.75e+01 b.47.1.1 76138 1s0yA 76 3.84e+01 d.80.1.1 98314 1r4yA 136 3.85e+01 d.1.1.3 97056 1z2iA 358 3.90e+01 1hvd 319 3.91e+01 1avc a.65.1.1 18154 1sc3A 178 3.96e+01 c.17.1.1 105416 1jgwM 307 3.99e+01 f.26.1.1 63021 1hfeL 421 4.03e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1yf6M 307 4.07e+01 1n4qB 377 4.15e+01 a.102.4.3 91636 1oywA 523 4.17e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wniA 201 4.21e+01 d.92.1.9 109435 1yixA 265 4.24e+01 2fqrA 178 4.48e+01 1idm 343 4.49e+01 1cnzA c.77.1.1 35035 2std 172 4.50e+01 3stdA d.17.4.1 38085 1mpsM 307 4.55e+01 6prcM f.26.1.1 43468 1td9A 329 4.63e+01 1kbyM 307 4.78e+01 f.26.1.1 77330 1hvf 319 4.82e+01 1avc a.65.1.1 18155 1e14M 307 5.06e+01 6prcM f.26.1.1 43498 1l0wA 580 5.20e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1zhiB 138 5.22e+01 1z1aA 142 5.30e+01 1zuwA 272 5.31e+01 1qy7A 112 5.39e+01 d.58.5.1 96575 1xvbC 389 5.44e+01 2bozM 307 5.49e+01 2gjsA 176 5.56e+01 1mtyB 384 5.57e+01 1mtyB a.25.1.2 16740 1irxA 523 5.57e+01 a.97.1.2,c.26.1.1 71378,71379 1qtfA 246 5.58e+01 1agjA b.47.1.1 25830 1kuuA 202 5.64e+01 d.153.2.1 73019 1mp1A 111 5.74e+01 a.188.1.1 91382 1bmqA 167 5.75e+01 1pauA c.17.1.1 30998 1rpnA 335 5.84e+01 c.2.1.2 97708 1sawA 225 6.07e+01 2fug4 409 6.07e+01 1zp6A 191 6.15e+01 1mreH 215 6.17e+01 1mfa b.1.1.1,b.1.1.2 20019,21073 2cwcA 303 6.20e+01 2a8yA 270 6.27e+01 1d3gA 367 6.38e+01 1d3gA c.1.4.1 28600 1efrA 510 6.41e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18299,26464,32344 2ck3A 510 6.43e+01 1bc1 319 6.57e+01 1avc a.65.1.1 18173 1eexG 173 6.68e+01 1dioG a.23.2.1 16490 1dbhA 354 6.70e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1ibcA 194 6.71e+01 1pauA c.17.1.1 30997 1bi7B 156 6.73e+01 1bd8 d.211.1.1 19166 1vorG 178 6.75e+01 1vr6A 350 6.80e+01 1e0rB 159 6.89e+01 1a6dA c.8.5.2 30824 1nkwD 180 6.92e+01 i.1.1.2 80589 1ekqA 272 6.92e+01 1c3qA c.72.1.2 34941 1jgzM 307 6.94e+01 f.26.1.1 63033 1snnA 227 6.94e+01 d.115.1.2 105821 1gxtA 91 6.95e+01 d.58.10.1 76377 1gxuA 91 7.01e+01 d.58.10.1 76378 1pvwA 227 7.02e+01 d.115.1.2 95192 1oqpA 77 7.03e+01 a.39.1.5 87319 1sedA 117 7.20e+01 a.219.1.1 105449 1z0sA 278 7.23e+01 1rzmA 338 7.28e+01 c.1.10.4 105137 1yhfA 115 7.32e+01 1n0lA 224 7.35e+01 b.1.11.1,b.7.2.1 79744,79745 2fqvA 178 7.40e+01 1fyeA 229 7.43e+01 1fyeA c.23.16.4 31477 1pdkA 218 7.43e+01 1qpxA b.1.11.1,b.7.2.1 22322,23204 1ad1A 266 7.52e+01 1aj2 c.1.21.1 29668 1vhzA 198 7.53e+01 d.113.1.1 100718 1vf5B 160 7.62e+01 f.32.1.1 100579 1qzzA 374 7.67e+01 a.4.5.29,c.66.1.12 96719,96720 1b9rA 105 7.71e+01 1ayfA d.15.4.1 37683 1g5hA 454 7.72e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1y4jA 284 7.77e+01 2adr 60 7.88e+01 2adr g.37.1.1,g.37.1.1 45030,45031 1wf1A 110 8.07e+01 1yadA 221 8.09e+01 1wdnA 226 8.18e+01 1lst c.94.1.1 35816 1w36C 1122 8.20e+01 1g0dA 695 8.37e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1p27B 106 8.55e+01 d.58.7.1 93908 1bev3 242 8.76e+01 1aym3 1esjA 284 8.97e+01 1c3qA c.72.1.2 34943 1mxiA 160 8.98e+01 c.116.1.1 79646