# List of top-scoring protein chains for T0316.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gpmA 525 2.09e-12 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vl2A 421 1.07e-10 c.26.2.1,d.210.1.1 108708,108709 1korA 400 1.10e-10 c.26.2.1,d.210.1.1 72824,72825 1wy5A 317 1.05e-08 2c5sA 413 5.00e-08 1xngA 268 1.34e-07 1ni5A 433 1.08e-05 c.26.2.5,d.229.1.1 80533,80534 2d13A 227 2.56e-04 1k92A 455 4.46e-04 c.26.2.1,d.210.1.1 68325,68326 1ru8A 232 4.67e-04 c.26.2.1 97849 1m1zA 513 2.03e-03 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 2.46e-03 1ct9A c.26.2.1,d.153.1.1 31616,41834 1kqpA 271 3.48e-03 c.26.2.1 72883 1q15A 503 5.22e-03 c.26.2.1,d.153.1.1 95538,95539 1wxiA 275 8.69e-02 2bpqA 373 1.09e-01 1zvwA 378 1.14e-01 1zunA 325 3.84e-01 1wqaA 455 3.92e-01 1o89A 345 7.86e-01 b.35.1.2,c.2.1.1 92644,92645 1i3oA 175 1.53e+00 1pauA c.17.1.1 61603 1o5wA 534 1.57e+00 c.3.1.2,d.16.1.5 92520,92521 1g8kB 133 1.59e+00 1g8jB b.33.1.1 24435 1g8jB 133 1.69e+00 1g8jB b.33.1.1 24439 2bxrA 527 1.83e+00 1uj2A 252 2.09e+00 c.37.1.6 99452 1xrjA 261 2.13e+00 1z2iA 358 2.70e+00 1cp3A 277 3.12e+00 1pauA c.17.1.1 30992 1nmeA 146 3.49e+00 c.17.1.1 85874 1rhjA 147 3.53e+00 c.17.1.1 97481 1t2aA 375 6.24e+00 c.2.1.2 99078 1tx2A 297 6.42e+00 c.1.21.1 107420 1wjgA 137 6.46e+00 1sauA 115 6.86e+00 2ebn 289 7.53e+00 2ebn c.1.8.5 28990 1nmsA 249 7.77e+00 c.17.1.1 85879 1qx3A 257 7.82e+00 c.17.1.1 96515 2c72A 520 9.70e+00 2bk5A 520 9.71e+00 1s3eA 520 9.71e+00 c.3.1.2,d.16.1.5 98426,98427 2c76A 520 9.72e+00 1rpnA 335 9.76e+00 c.2.1.2 97708 2c75A 520 9.87e+00 2c73A 520 9.94e+00 2fliA 220 1.05e+01 1l7pA 211 1.19e+01 c.108.1.4 73670 1j97A 211 1.20e+01 1f5sA c.108.1.4 62753 1l7mA 211 1.22e+01 c.108.1.4 73664 1sur 215 1.24e+01 1sur c.26.2.2 31620 1jmvA 141 1.25e+01 c.26.2.4 66897 1rr7A 129 1.53e+01 a.4.1.14 105075 1vbkA 307 1.64e+01 1bw0A 416 1.70e+01 1bw0A c.67.1.1 34385 2b7oA 464 1.75e+01 1dekA 241 1.85e+01 1dekA c.37.1.1 31842 2cvhA 220 2.08e+01 1f5xA 208 2.11e+01 1f5xA a.87.1.1 18516 7odcA 424 2.14e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1ulzA 451 2.14e+01 b.84.2.1,c.30.1.1,d.142.1.2 99575,99576,99577 1js1X 324 2.22e+01 c.78.1.1,c.78.1.1 71834,71835 1vmdA 178 2.24e+01 c.24.1.2 108891 2todA 425 2.31e+01 7odcA b.49.2.3,c.1.6.1 26489,28651 1f3tA 425 2.33e+01 7odcA b.49.2.3,c.1.6.1 26493,28655 1njjA 425 2.33e+01 b.49.2.3,c.1.6.1 91905,91906 1szrA 425 2.37e+01 1dusA 194 2.48e+01 1dusA c.66.1.4 34182 1x7oA 287 2.48e+01 2c6qA 351 2.60e+01 2a7rA 366 2.60e+01 2fg6C 338 2.65e+01 2liv 344 2.67e+01 2liv c.93.1.1 35708 1irxA 523 2.77e+01 a.97.1.2,c.26.1.1 71378,71379 1z15A 344 2.81e+01 1jhzA 289 2.95e+01 c.93.1.1 66731 1jfsA 340 2.95e+01 a.35.1.5,c.93.1.1 66650,66651 1p3dA 475 3.06e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1jztA 246 3.17e+01 c.104.1.1 63319 1l1sA 113 3.19e+01 c.114.1.1 73484 1lt8A 406 3.36e+01 c.1.26.1 78186 2gfqA 298 3.37e+01 2c57A 180 3.38e+01 1vhh 162 3.42e+01 1vhh d.65.1.2 39550 1rtwA 220 3.43e+01 a.132.1.3 97823 1ezrA 314 3.58e+01 2masA c.70.1.1 34816 1dbp 271 3.65e+01 2dri c.93.1.1 35639 1m1tA 392 3.70e+01 c.95.1.1,c.95.1.1 78433,78434 1m3kA 392 3.73e+01 c.95.1.1,c.95.1.1 78565,78566 2givA 295 3.73e+01 1ou6A 392 3.73e+01 c.95.1.1,c.95.1.1 104025,104026 1dluA 389 3.73e+01 1afwA c.95.1.1,c.95.1.1 35916,35917 1qflA 389 3.74e+01 1afwA c.95.1.1,c.95.1.1 35908,35909 1m4tA 392 3.74e+01 c.95.1.1,c.95.1.1 78617,78618 1h5yA 253 3.78e+01 c.1.2.1 65638 1hbxG 157 3.92e+01 1awcA a.4.5.21 60934 1xxxA 303 4.01e+01 2c4wA 176 4.01e+01 1eepA 404 4.04e+01 1ak5 c.1.5.1 28636 1ge9A 184 4.07e+01 1dd5A d.67.3.1 60463 1pvnA 376 4.11e+01 c.1.5.1 88312 1wh5A 80 4.11e+01 1wdkA 715 4.12e+01 a.100.1.3,a.100.1.3,c.2.1.6,c.14.1.3 109250,109251,109252,109253 1t3gA 159 4.19e+01 1vp8A 201 4.28e+01 2adr 60 4.34e+01 2adr g.37.1.1,g.37.1.1 45030,45031 2bleA 367 4.35e+01 1d7kA 421 4.41e+01 7odcA b.49.2.3,c.1.6.1 26486,28648 1ytkA 398 4.51e+01 1iukA 140 4.65e+01 c.2.1.8 83712 1onfA 500 4.69e+01 c.3.1.5,c.3.1.5,d.87.1.1 87141,87142,87143 1tbhA 314 4.72e+01 1d6nA 214 4.72e+01 1qk3A c.61.1.1 34077 2d8aA 348 4.76e+01 2c4vA 167 4.78e+01 1doqA 69 4.98e+01 1coo a.60.3.1 17968 1mzhA 225 5.03e+01 c.1.10.1 79698 2bw0A 329 5.05e+01 2gm3A 175 5.13e+01 1jftA 340 5.23e+01 a.35.1.5,c.93.1.1 66652,66653 1xm7A 195 5.23e+01 1g67A 225 5.25e+01 c.1.3.1 60311 1qqbA 340 5.29e+01 1qpzA a.35.1.5,c.93.1.1 17099,35674 1vpwA 340 5.30e+01 1qpzA a.35.1.5,c.93.1.1 17087,35680 1dbqA 289 5.30e+01 1qpzA c.93.1.1 35666 1qpzA 340 5.30e+01 1qpzA a.35.1.5,c.93.1.1 17097,35673 1sg9A 282 5.31e+01 c.66.1.30 105526 1nv8A 284 5.31e+01 c.66.1.30 86224 1r46A 398 5.31e+01 b.71.1.1,c.1.8.1 96973,96974 1vq1A 294 5.32e+01 2pugA 340 5.35e+01 1qpzA a.35.1.5,c.93.1.1 17088,35683 2masA 314 5.36e+01 2masA c.70.1.1 34810 1qy7A 112 5.42e+01 d.58.5.1 96575 1wp9A 494 5.45e+01 1j5tA 242 5.51e+01 c.1.2.4 71583 1hslA 238 5.51e+01 1lst c.94.1.1 35804 1lrtA 376 5.53e+01 c.1.5.1 84685 1me8A 503 5.58e+01 c.1.5.1 79028 1g4sA 226 5.62e+01 c.1.3.1 60247 1r1hA 696 5.67e+01 d.92.1.4 104756 1ngnA 155 5.67e+01 a.96.1.2 85697 1oc7A 364 5.71e+01 c.6.1.1 86794 1v9lA 421 5.73e+01 2pucA 340 5.77e+01 1qpzA a.35.1.5,c.93.1.1 17094,35684 1wnvA 215 5.77e+01 1uqvA 85 5.87e+01 a.60.1.2 99798 1gz1A 362 5.88e+01 c.6.1.1 76405 1i4nA 251 5.88e+01 c.1.2.4 71114 1ocjA 362 5.88e+01 c.6.1.1 86801 1db3A 372 5.93e+01 1db3A c.2.1.2 29813 1bvwA 360 5.95e+01 1bvwA c.6.1.1 30668 2bvwA 362 5.96e+01 1bvwA c.6.1.1 30666 1ez4A 318 6.09e+01 c.2.1.5,d.162.1.1 64917,64918 1yvkA 163 6.11e+01 1fnpL 281 6.12e+01 6prcL f.26.1.1 59914 1z1vA 80 6.20e+01 1j0eA 341 6.20e+01 c.79.1.1 83906 2a22A 215 6.40e+01 1w8rA 263 6.42e+01 2tpsA 227 6.53e+01 2tpsA c.1.3.1 28591 1xg5A 279 6.56e+01 1g6cA 227 6.56e+01 c.1.3.1 60315 1d2vC 466 6.58e+01 1mhlC 1tidB 119 6.65e+01 c.13.2.1 107000 1ihuA 589 6.67e+01 c.37.1.10,c.37.1.10 62394,62395 1s3iA 310 6.75e+01 b.46.1.1,c.65.1.1 98435,98436 2c71A 216 6.79e+01 2fupA 168 6.81e+01 1y6jA 318 6.86e+01 1gotG 73 6.93e+01 1tbgE a.137.3.1 19629 1jqlB 140 6.97e+01 c.37.1.20 63234 1f6nL 281 6.99e+01 6prcL f.26.1.1 59660 1u9pA 120 7.03e+01 1m11R 243 7.20e+01 i.6.1.1 74366 1g69A 228 7.22e+01 c.1.3.1 60313 1bccA 446 7.23e+01 1be3A d.185.1.1,d.185.1.1 58946,58947 1dctA 324 7.26e+01 6mhtA c.66.1.26 34244 1w8sA 263 7.51e+01 1j0dA 341 7.65e+01 c.79.1.1 83902 1ok3A 254 7.69e+01 g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 93208,93209,93210,93211 1dofA 403 7.70e+01 1c3cA a.127.1.1 19429 1aol 228 7.83e+01 1aol b.20.1.1 23840 1lgbC 159 7.92e+01 1cb6A c.94.1.2 35858 1zh2A 121 7.92e+01 1jexA 94 7.98e+01 1cyo d.120.1.1 62923 1s1iB 253 7.98e+01 i.1.1.1 105176 2a3nA 355 7.99e+01 1f2dA 341 8.04e+01 1f2dA c.79.1.1 35298 1vbjA 281 8.05e+01 1kmjA 406 8.22e+01 c.67.1.3 68695 1jf9A 408 8.26e+01 1c0nA c.67.1.3 62931 1kmkA 406 8.28e+01 c.67.1.3 68696 1th8B 116 8.39e+01 c.13.2.1 106909 1ti6A 875 8.50e+01 b.52.2.2,c.81.1.1 106974,106975 1p2fA 220 8.51e+01 a.4.6.1,c.23.1.1 87720,87721 1l9yA 263 8.63e+01 d.157.1.1 84574 1ymqA 261 8.64e+01 1ojxA 263 8.74e+01 c.1.10.1 93164 1ve3A 227 8.77e+01 1fnqL 281 8.87e+01 6prcL f.26.1.1 59918 1jh9A 340 8.89e+01 a.35.1.5,c.93.1.1 66710,66711 1qgnA 445 8.99e+01 1ibjA c.67.1.3 34403