# List of top-scoring protein chains for T0316.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gpmA 525 4.34e-06 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1xngA 268 6.68e-06 2c5sA 413 9.65e-06 1wy5A 317 6.75e-05 1vl2A 421 4.76e-04 c.26.2.1,d.210.1.1 108708,108709 1ni5A 433 5.99e-04 c.26.2.5,d.229.1.1 80533,80534 2d13A 227 3.92e-03 1q15A 503 3.12e-02 c.26.2.1,d.153.1.1 95538,95539 1korA 400 3.26e-02 c.26.2.1,d.210.1.1 72824,72825 1ru8A 232 3.37e-02 c.26.2.1 97849 1m1zA 513 5.53e-02 c.26.2.1,d.153.1.1 78457,78458 1k92A 455 8.55e-02 c.26.2.1,d.210.1.1 68325,68326 1kqpA 271 2.69e-01 c.26.2.1 72883 1wxiA 275 7.04e-01 1ct9A 553 1.38e+00 1ct9A c.26.2.1,d.153.1.1 31616,41834 1o89A 345 1.78e+00 b.35.1.2,c.2.1.1 92644,92645 2a22A 215 1.98e+00 2bpqA 373 3.14e+00 1zvwA 378 3.17e+00 1wqaA 455 3.56e+00 1wwrA 171 4.38e+00 1z97A 266 5.42e+00 2bxrA 527 5.97e+00 1z93A 266 6.05e+00 2f5qA 274 6.74e+00 2f5nA 274 6.76e+00 1r2zA 274 6.81e+00 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1l1zA 274 6.83e+00 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 2ax3A 502 7.37e+00 1dekA 241 8.09e+00 1dekA c.37.1.1 31842 1x6hA 86 8.13e+00 1sg0A 230 8.19e+00 1zx1A 231 8.20e+00 2bzsA 236 8.23e+00 7odcA 424 1.01e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 2todA 425 1.02e+01 7odcA b.49.2.3,c.1.6.1 26489,28651 1f3tA 425 1.03e+01 7odcA b.49.2.3,c.1.6.1 26493,28655 1szrA 425 1.03e+01 1njjA 425 1.03e+01 b.49.2.3,c.1.6.1 91905,91906 1nmoA 247 1.50e+01 c.135.1.1 91980 1bolA 222 1.54e+01 1bolA d.124.1.1 41120 1w17A 263 1.62e+01 1treA 255 1.76e+01 1amk c.1.1.1 28505 1t2aA 375 1.77e+01 c.2.1.2 99078 1tmhA 254 1.82e+01 1amk c.1.1.1 28507 1w1b1 257 1.83e+01 2adr 60 1.83e+01 2adr g.37.1.1,g.37.1.1 45030,45031 1ny1A 240 1.89e+01 c.6.2.3 86395 1o5wA 534 2.04e+01 c.3.1.2,d.16.1.5 92520,92521 1dbp 271 2.07e+01 2dri c.93.1.1 35639 1db3A 372 2.15e+01 1db3A c.2.1.2 29813 1rc9A 221 2.24e+01 1d7kA 421 2.34e+01 7odcA b.49.2.3,c.1.6.1 26486,28648 1n4nA 47 2.72e+01 g.3.7.5 91620 2fq1A 287 2.85e+01 1drj 271 2.94e+01 2dri c.93.1.1 35642 2dri 271 2.99e+01 2dri c.93.1.1 35637 1naaA 541 2.99e+01 c.3.1.2,d.16.1.1 80365,80366 1kdgA 546 3.01e+01 c.3.1.2,d.16.1.1 77337,77338 1bccA 446 3.04e+01 1be3A d.185.1.1,d.185.1.1 58946,58947 2f4iA 197 3.07e+01 1vjzA 341 3.07e+01 c.1.8.3 100838 1rpnA 335 3.13e+01 c.2.1.2 97708 1drk 271 3.14e+01 2dri c.93.1.1 35638 1bw0A 416 3.31e+01 1bw0A c.67.1.1 34385 1xg5A 279 3.38e+01 1liiA 363 3.42e+01 c.72.1.1 73921 1pyqA 144 3.48e+01 b.52.2.1 95372 1lioA 363 3.56e+01 c.72.1.1 73924 1t6sA 162 3.61e+01 1rsgA 516 3.68e+01 1bvuA 418 3.74e+01 1hwyA c.2.1.7,c.58.1.1 30226,33874 1dtyA 429 3.94e+01 1dtyA c.67.1.4 34495 1vbkA 307 3.97e+01 1qcrA 446 3.97e+01 1be3A d.185.1.1,d.185.1.1 59025,59026 1ppjA 446 3.99e+01 d.185.1.1,d.185.1.1 104252,104253 1s09A 429 4.01e+01 c.67.1.4 98261 1usvB 170 4.11e+01 d.83.2.1 99888 2gfqA 298 4.14e+01 1eaxA 241 4.15e+01 b.47.1.2 64889 1s06A 429 4.18e+01 c.67.1.4 98255 1sqbA 480 4.18e+01 d.185.1.1,d.185.1.1 105890,105891 1usuB 170 4.20e+01 d.83.2.1 99886 1qnxA 209 4.21e+01 1qnxA d.111.1.1 40914 1ulzA 451 4.23e+01 b.84.2.1,c.30.1.1,d.142.1.2 99575,99576,99577 1ti6B 274 4.28e+01 b.3.5.1,d.58.1.5 106976,106977 2gm3A 175 4.64e+01 1uj2A 252 4.65e+01 c.37.1.6 99452 1xrjA 261 4.66e+01 1ff3A 211 4.70e+01 1fvaA d.58.28.1 39411 2absA 383 4.78e+01 2a8nA 144 4.82e+01 1n4kA 381 4.83e+01 a.118.22.1,b.42.6.1 79992,79993 1ba2A 271 4.87e+01 2dri c.93.1.1 35640 1mgvA 429 4.96e+01 c.67.1.4 79107 1s0aA 429 4.96e+01 c.67.1.4 98263 1qj5A 429 4.96e+01 1dtyA c.67.1.4 34493 1w19A 160 5.00e+01 1sauA 115 5.04e+01 1s08A 429 5.18e+01 c.67.1.4 98259 1pt0A 144 5.21e+01 b.52.2.1 95082 1dgmA 363 5.28e+01 1bx4A c.72.1.1 34936 1x7uA 748 5.34e+01 2b3jA 159 5.51e+01 1rc2A 231 5.54e+01 f.19.1.1 97281 1izcA 339 5.63e+01 c.1.12.5 83838 1yy5A 513 5.66e+01 1ehyA 294 5.77e+01 1ehyA c.69.1.11 34693 2amlA 373 5.88e+01 1y7yA 74 6.03e+01 1ds1A 324 6.25e+01 1drtA b.82.2.2 28127 1mwvA 714 6.38e+01 a.93.1.3,a.93.1.3 85161,85162 1eepA 404 6.50e+01 1ak5 c.1.5.1 28636 2bv1A 145 6.52e+01 1nnhA 294 6.65e+01 d.104.1.1 92005 1tykA 34 6.69e+01 g.3.6.2 107462 1lu8A 35 6.71e+01 g.3.6.2 91125 1dflW 139 6.94e+01 1wdcB a.39.1.5 17306 1s07A 429 6.96e+01 c.67.1.4 98257 1kk8B 139 6.98e+01 a.39.1.5 77430 1z1vA 80 7.00e+01 1eceA 358 7.12e+01 1eceA c.1.8.3 28813 1ka2A 499 7.27e+01 d.92.1.5 77305 1wepA 79 7.28e+01 1scmB 145 7.42e+01 1wdcB a.39.1.5 17304 1kqzA 273 7.43e+01 c.1.8.5 68844 2b43A 526 7.48e+01 1sh0A 510 7.50e+01 e.8.1.4 98876 5eas 548 7.58e+01 5eat a.102.4.1,a.128.1.3 18852,19444 5eat 548 7.58e+01 5eat a.102.4.1,a.128.1.3 18853,19445 1vrxA 358 7.63e+01 1wdcB 156 7.74e+01 1wdcB a.39.1.5 17302 1uqvA 85 7.78e+01 a.60.1.2 99798 1x6eA 72 7.95e+01 1ryyA 652 7.99e+01 1amk 251 7.99e+01 1amk c.1.1.1 28503 1y791 680 8.07e+01 1wirA 121 8.11e+01 2b9vA 652 8.23e+01 1n55A 251 8.23e+01 c.1.1.1 80007 1x3lA 440 8.37e+01 1nx9A 652 8.45e+01 b.18.1.13,c.69.1.21 92285,92286 1ag8A 499 8.47e+01 1bpwA c.82.1.1 35341 1tqyB 415 8.54e+01 c.95.1.1,c.95.1.1 107247,107248 1vhtA 218 8.63e+01 c.37.1.1 100700 1vl1A 232 8.70e+01 c.124.1.1 108707 1tx2A 297 8.75e+01 c.1.21.1 107420 8tfvA 21 8.82e+01 j.3.1.2 46071 2at2A 300 8.85e+01 3csuA c.78.1.1,c.78.1.1 35196,35197 1kr0A 273 8.89e+01 c.1.8.5 68845