# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1eal 127 3.18e-01 1hmt b.60.1.2 27227 1xngA 268 6.39e-01 2a7yA 83 4.97e+00 1theA 260 5.22e+00 1theB d.3.1.1 37056 1theB 260 5.26e+00 1theB d.3.1.1 37057 1lvwA 295 5.82e+00 c.68.1.6 84723 1ru8A 232 5.84e+00 c.26.2.1 97849 1b3mA 389 6.40e+00 1b3mA 1el5A 389 6.69e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1l9fA 389 6.72e+00 c.3.1.2,d.16.1.3 73716,73717 1goh 639 8.38e+00 1gof b.1.18.2,b.18.1.1,b.69.1.1 21809,23711,27633 1gmyA 261 8.50e+00 d.3.1.1 76236 2azqA 311 9.83e+00 1csbB 205 1.11e+01 1theB 1nezG 128 1.14e+01 b.1.1.1 85592 1bqhG 129 1.16e+01 1cd8 b.1.1.1 19715 1dq3A 454 1.18e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1hgxA 183 1.20e+01 1tc1A c.61.1.1 34027 1wosA 364 1.23e+01 b.44.2.1,d.250.1.1 109468,109469 1rsy 152 1.32e+01 1rsy b.7.1.2 23192 1xcbA 211 1.35e+01 a.4.5.38,c.2.1.12 109552,109553 1iloA 77 1.38e+01 c.47.1.1 66205 2cokA 113 1.44e+01 2a9mL 110 1.48e+01 1i8nA 126 1.59e+01 1i8nA g.10.1.2 61976 1vckA 115 1.70e+01 1r26A 125 1.72e+01 c.47.1.1 96847 2gxfA 142 1.80e+01 1k3iA 656 1.92e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1k2yX 463 2.06e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1chmA 401 2.15e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1cauA 181 2.16e+01 1dgwA b.82.1.2 28102 1dgwA 178 2.19e+01 1dgwA b.82.1.2 28090 1gof 639 2.21e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1llwA 1520 2.22e+01 b.80.4.1,c.1.4.1,d.153.1.1 74017,74018,74019 1sb2A 133 2.29e+01 1p5dX 463 2.42e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1ofdA 1520 2.54e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1rzfL 213 2.67e+01 b.1.1.1,b.1.1.2 98152,98153 2f5tX 233 2.75e+01 1s68A 249 2.82e+01 d.142.2.4 98591 1bn7A 294 2.83e+01 1bn6A c.69.1.8 34677 1bn6A 294 2.83e+01 1bn6A c.69.1.8 34678 1qk4A 233 2.84e+01 1qk3A c.61.1.1 34037 1dgrC 178 2.87e+01 1dgwA b.82.1.2 28100 1svpA 161 3.00e+01 1svpA b.47.1.3 26384 1p5hA 428 3.08e+01 c.123.1.1 87802 1fsgA 233 3.12e+01 1qk3A c.61.1.1 34029 1u24A 337 3.15e+01 1yovA 537 3.20e+01 1i3uA 127 3.21e+01 1gc1H b.1.1.1 61636 1bynA 128 3.48e+01 1rsy b.7.1.2 23193 1jmmA 377 3.51e+01 b.30.6.1 71749 1kbaA 66 3.52e+01 3ebx g.7.1.1 44431 1ekgA 127 3.53e+01 1dlxA d.82.2.1 40021 1pmzA 86 3.64e+01 a.39.1.10 104195 1kn0A 212 3.74e+01 d.50.1.3 77444 1v8hA 107 3.82e+01 1wy2A 351 3.97e+01 1upiA 225 4.18e+01 b.82.1.1 99757 1cqwA 295 4.18e+01 1b6g c.69.1.8 34679 1tif 78 4.19e+01 1tif d.15.8.1 37836 1vs0A 310 4.32e+01 1ld4A 264 4.34e+01 i.6.1.1 77886 1qydA 313 4.35e+01 c.2.1.2 96583 1ass 159 4.37e+01 1a6dA c.8.5.2 30818 1jssA 224 4.47e+01 d.129.3.2 71844 1qk3A 233 4.53e+01 1qk3A c.61.1.1 34031 1nslA 184 4.57e+01 d.108.1.1 86137 1b69A 69 4.66e+01 2bb8 d.10.1.1 37479 1qtfA 246 4.67e+01 1agjA b.47.1.1 25830 2cavA 445 4.77e+01 1dgwA b.82.1.2,b.82.1.2 28094,28095 1a12A 413 4.97e+01 1a12A b.69.5.1 27663 1ll8A 114 5.01e+01 d.110.3.5 78089 1bb8 71 5.52e+01 2bb8 d.10.1.1 37478 1mvfA 135 5.53e+01 b.1.1.1 85141 1io1A 398 5.54e+01 1io1A e.32.1.1 62611 1zmaA 118 5.60e+01 2bb8 71 5.66e+01 2bb8 d.10.1.1 37480 1vgwA 231 5.67e+01 c.68.1.13 100612 1ru4A 400 5.69e+01 b.80.1.9 97836 2bu3A 254 5.71e+01 1vrmA 325 5.81e+01 1gkuB 1054 5.84e+01 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 1wckA 220 5.84e+01 1eudB 396 5.89e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1i6uA 130 5.98e+01 d.140.1.1 61850 1dhy 292 6.04e+01 1han d.32.1.3,d.32.1.3 38504,38505 1twfA 1733 6.12e+01 1eucB 396 6.12e+01 2scuB c.23.4.1,d.142.1.4 31149,41570 2d13A 227 6.16e+01 1dbrA 231 6.26e+01 1qk3A c.61.1.1 34041 1m4vA 204 6.32e+01 b.40.2.2,d.15.6.1 74459,74460 1kk8B 139 6.34e+01 a.39.1.5 77430 1kp0A 402 6.38e+01 c.55.2.1,d.127.1.1 72834,72835 1gpmA 525 6.38e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1lfo 128 6.40e+01 1hmt b.60.1.2 27223 1i50A 1733 6.41e+01 e.29.1.2 61754 1y89A 238 6.52e+01 1mbmA 198 6.63e+01 b.47.1.3 78916 1xzoA 174 6.72e+01 1a6dA 545 6.77e+01 1a6dA a.129.1.2,c.8.5.2,d.56.1.2 19488,30819,38936 1yezA 68 6.83e+01 1scmB 145 6.90e+01 1wdcB a.39.1.5 17304 1c14A 262 7.31e+01 1eny c.2.1.2 29927 2fp4B 395 7.35e+01 1kppA 145 7.36e+01 d.20.1.2 72846 1k32A 1045 7.45e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1qmeA 702 7.53e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1wu7A 434 7.57e+01 1iq4A 179 7.60e+01 1iq4A d.77.1.1 62641 1j8mF 297 7.85e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1httA 423 7.87e+01 1adjA c.51.1.1,d.104.1.1 33178,40727 1wdcB 156 7.87e+01 1wdcB a.39.1.5 17302 1s6cA 183 7.90e+01 a.39.1.5 98594 1wsrA 375 7.95e+01 3ait 74 7.97e+01 1hoe b.5.1.1 22835 1txb 73 8.18e+01 1txb g.7.1.1 44455 1y4oA 104 8.39e+01 1lbvA 252 8.44e+01 e.7.1.1 73813 1xauA 122 8.46e+01 1j8yF 297 8.51e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1x99A 145 8.52e+01 1qsgA 265 8.78e+01 1eny c.2.1.2 29935 2absA 383 8.83e+01 1vj0A 380 8.83e+01 b.35.1.2,c.2.1.1 100786,100787 1o0wA 252 8.90e+01 a.149.1.1,d.50.1.1 80751,80752 2snv 151 8.95e+01 1svpA b.47.1.3 26394