# List of top-scoring protein chains for T0316.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b7yB 785 3.32e-01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1eal 127 7.53e-01 1hmt b.60.1.2 27227 1iq4A 179 1.11e+00 1iq4A d.77.1.1 62641 1ok0A 74 1.69e+00 b.5.1.1 93191 1hm7A 336 2.54e+00 a.128.1.4 76719 1mjiA 182 3.37e+00 d.77.1.1 79208 1s1iH 191 3.64e+00 i.1.1.1 105182 1zovA 386 4.15e+00 1mkeA 152 4.27e+00 b.55.1.4 79231 1ps1A 337 4.44e+00 1ps1A a.128.1.4 19450 1o1uA 127 4.44e+00 b.60.1.2 81076 1t2xA 639 6.29e+00 b.1.18.2,b.18.1.1,b.69.1.1 106292,106293,106294 1gof 639 6.29e+00 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1k3iA 656 6.29e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1mioA 533 6.46e+00 1qguA c.92.2.3 35601 2aw4F 178 6.94e+00 1po5A 476 7.94e+00 a.104.1.1 94963 1xrtA 467 8.85e+00 1l9cA 389 9.08e+00 c.3.1.2,d.16.1.3 77815,77816 1el5A 389 9.54e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1suoA 476 9.97e+00 a.104.1.1 106026 1yaaA 412 1.05e+01 1ajsA c.67.1.1 34280 1m94A 93 1.07e+01 d.15.1.1 78865 1bkf 107 1.09e+01 1fkj d.26.1.1 38382 1xngA 268 1.17e+01 2azqA 311 1.25e+01 1m5xA 170 1.29e+01 d.95.2.1 84844 1oy1A 228 1.36e+01 c.23.16.2 87548 1vhqA 232 1.39e+01 c.23.16.2 100696 1cicA 214 1.43e+01 8fabA b.1.1.1,b.1.1.2 19964,21024 1eymA 107 1.44e+01 1fkj d.26.1.1 38403 1bl4A 107 1.47e+01 1fkj d.26.1.1 38393 1tcoC 107 1.47e+01 1fkj d.26.1.1 38426 1fkj 107 1.49e+01 1fkj d.26.1.1 38384 1qdqA 253 1.51e+01 1theB d.3.1.1 37064 1lbvA 252 1.53e+01 e.7.1.1 73813 1tt5A 531 1.58e+01 c.111.1.2 107291 1r4mA 529 1.58e+01 c.111.1.2 96999 1yovA 537 1.62e+01 1xwyA 264 1.64e+01 2dg4A 107 1.88e+01 1dq3A 454 1.90e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1g5cA 170 1.93e+01 1g5cA c.53.2.1 60264 1j83A 180 1.94e+01 b.18.1.12 66430 1nkwD 180 2.04e+01 i.1.1.2 80589 1vorG 178 2.05e+01 2ctkA 104 2.15e+01 1fkl 107 2.16e+01 1fkj d.26.1.1 38423 2dg9A 107 2.16e+01 2a6hC 1119 2.21e+01 1pswA 348 2.26e+01 c.87.1.7 88287 1ojt 482 2.28e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30581,30582,40212 1bhy 482 2.29e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30583,30584,40213 1sm2A 264 2.37e+01 d.144.1.7 105754 1cqqA 180 2.53e+01 1cqqA b.47.1.4 26422 1ntyA 311 2.54e+01 a.87.1.1,b.55.1.1 103873,103874 1g47A 77 2.56e+01 1g47A g.39.1.3,g.39.1.3 45147,45148 6cgt 684 2.78e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21837,22506,27744,28731 1dn0B 232 2.79e+01 1igtB b.1.1.1,b.1.1.2 19831,20935 1qlrB 232 2.82e+01 1igtB b.1.1.1,b.1.1.2 19835,20939 5cgt 684 2.92e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21824,22493,27731,28718 4cgt 678 2.92e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21825,22494,27732,28719 1cgt 684 2.92e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21815,22484,27722,28709 8cgtA 684 2.93e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21831,22500,27738,28725 1cteA 254 3.12e+01 1theB d.3.1.1 37058 1theA 260 3.14e+01 1theB d.3.1.1 37056 1eoaA 209 3.45e+01 3pchA b.3.6.1 22732 1tv5A 443 3.54e+01 1eo9A 209 3.54e+01 3pchA b.3.6.1 22731 1vckA 115 3.62e+01 1z7dA 433 3.80e+01 1odkA 235 3.98e+01 c.56.2.1 86863 1xcvA 139 4.02e+01 1uv4A 293 4.02e+01 1rynA 202 4.23e+01 c.56.3.1 98107 1mirA 322 4.42e+01 1theB d.3.1.1 37062 2atpA 122 4.42e+01 1rybA 212 4.47e+01 c.56.3.1 98098 1rymA 212 4.47e+01 c.56.3.1 98106 2aj3A 213 4.55e+01 1nezG 128 4.61e+01 b.1.1.1 85592 1ru8A 232 4.62e+01 c.26.2.1 97849 2b7aA 293 4.65e+01 1ynjC 1119 4.67e+01 1l9uC 1118 4.67e+01 i.8.1.1 73750 1i6vC 1118 4.67e+01 e.29.1.1 61856 1hqmC 1119 4.67e+01 i.8.1.1 45974 1bqhG 129 4.71e+01 1cd8 b.1.1.1 19715 1yat 113 4.85e+01 1fkj d.26.1.1 38427 1yc1A 264 4.88e+01 1csbB 205 4.89e+01 1theB 1sp4B 205 4.93e+01 1chmA 401 5.03e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2dccA 256 5.12e+01 1qtfA 246 5.15e+01 1agjA b.47.1.1 25830 1dt2A 245 5.24e+01 b.47.1.1 76138 1gmyA 261 5.28e+01 d.3.1.1 76236 1mc8A 343 5.46e+01 a.60.7.1,c.120.1.2 78945,78946 1kbaA 66 5.49e+01 3ebx g.7.1.1 44431 1jn6A 210 5.85e+01 b.1.1.1,b.1.1.2 66923,66924 1lgqA 112 5.86e+01 b.26.1.2 73891 1jnhA 212 5.86e+01 b.1.1.1,b.1.1.2 66939,66940 1ev13 239 5.88e+01 1aym3 1fyvA 161 5.90e+01 1fyvA c.23.2.1 31127 1wqsA 173 5.94e+01 3pbh 317 6.09e+01 1theB d.3.1.1 37053 1jwiB 125 6.16e+01 d.169.1.1 67384 1ydlA 79 6.28e+01 1b43A 340 6.30e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1f89A 291 6.46e+01 d.160.1.1 64988 2creA 71 6.48e+01 2tdx 226 6.49e+01 1bi0 a.4.5.24,a.76.1.1 16201,18407 1izcA 339 6.52e+01 c.1.12.5 83838 1flgA 582 6.56e+01 4aahA b.70.1.1 27682 1cc1L 498 6.72e+01 1h2rL e.18.1.1 43301 2cooA 70 6.78e+01 1qmjA 132 7.18e+01 1c1lA b.29.1.3 24210 1jmmA 377 7.32e+01 b.30.6.1 71749 1k3vA 579 7.34e+01 b.121.5.2 68122 1weuA 91 7.35e+01 1wu9A 80 7.56e+01 1tocR 120 7.58e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1y0lA 216 7.67e+01 1jssA 224 7.68e+01 d.129.3.2 71844 2cp0A 95 7.72e+01 1g3tA 226 7.72e+01 a.4.5.24,a.76.1.1,b.34.1.2 65127,65128,65129 1rhhA 215 7.85e+01 b.1.1.1,b.1.1.2 97473,97474 1lba 146 7.94e+01 1lba d.118.1.1 41062 1x0vA 354 7.94e+01 1txqB 86 8.09e+01 1fdr 248 8.22e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1x4xA 106 8.22e+01 1ocwL 120 8.34e+01 b.1.1.1 92780 1aroL 151 8.45e+01 1lba d.118.1.1 41063 2bcmA 165 8.72e+01