# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1el5A 389 2.56e-01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1dgwA 178 4.40e-01 1dgwA b.82.1.2 28090 1mvfA 135 6.74e-01 b.1.1.1 85141 1nezG 128 8.28e-01 b.1.1.1 85592 1xngA 268 1.17e+00 1dq3A 454 1.71e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1cb8A 678 1.81e+00 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1lvwA 295 2.30e+00 c.68.1.6 84723 1wosA 364 2.60e+00 b.44.2.1,d.250.1.1 109468,109469 1p5dX 463 2.82e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1xfpA 142 3.23e+00 b.1.1.1 109587 2fvgA 340 4.68e+00 1iloA 77 4.86e+00 c.47.1.1 66205 1rsy 152 4.99e+00 1rsy b.7.1.2 23192 1chmA 401 5.03e+00 1chmA c.55.2.1,d.127.1.1 33545,41142 1twfA 1733 5.27e+00 1lgpA 116 5.76e+00 b.26.1.2 73890 2gxfA 142 5.90e+00 1ofdA 1520 6.46e+00 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 2a7yA 83 7.23e+00 1ekgA 127 7.32e+00 1dlxA d.82.2.1 40021 1k3iA 656 7.45e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1tzyD 103 7.63e+00 a.22.1.1 107533 2d13A 227 7.78e+00 1ub3A 220 8.35e+00 c.1.10.1 88395 1r26A 125 9.20e+00 c.47.1.1 96847 1zvhA 134 1.00e+01 2f5tX 233 1.04e+01 1gpmA 525 1.13e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1g5cA 170 1.19e+01 1g5cA c.53.2.1 60264 1eylA 186 1.21e+01 1wba b.42.4.1 25593 1ru4A 400 1.33e+01 b.80.1.9 97836 2fimA 276 1.34e+01 1xcbA 211 1.36e+01 a.4.5.38,c.2.1.12 109552,109553 2cokA 113 1.37e+01 1wy2A 351 1.44e+01 1p1jA 533 1.53e+01 c.2.1.3,d.81.1.3 87687,87688 1yu0A 381 1.60e+01 1rzfL 213 1.61e+01 b.1.1.1,b.1.1.2 98152,98153 2blnA 305 1.61e+01 1yfsA 465 1.76e+01 1io1A 398 1.81e+01 1io1A e.32.1.1 62611 1nycA 111 1.93e+01 b.61.2.2 92336 1s68A 249 1.94e+01 d.142.2.4 98591 1u0qA 125 2.03e+01 1x99A 145 2.05e+01 1x0pA 143 2.11e+01 2c0zA 216 2.35e+01 1qmeA 702 2.40e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1hgxA 183 2.41e+01 1tc1A c.61.1.1 34027 2azwA 148 2.43e+01 2absA 383 2.44e+01 2djkA 133 2.46e+01 1cojA 212 2.50e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1zvyA 136 2.52e+01 1y0yA 353 2.66e+01 1xzoA 174 2.67e+01 2b4hA 254 2.73e+01 1upiA 225 2.74e+01 b.82.1.1 99757 1yc7A 124 2.78e+01 1rjcA 137 2.83e+01 1wqsA 173 2.85e+01 1mqkH 127 2.89e+01 b.1.1.1 85053 1mbmA 198 3.06e+01 b.47.1.3 78916 1jbeA 128 3.10e+01 3chy c.23.1.1 62845 1wlgA 299 3.13e+01 1i8nA 126 3.17e+01 1i8nA g.10.1.2 61976 2a2pA 129 3.22e+01 1wy5A 317 3.23e+01 1w85I 49 3.27e+01 1hmt 132 3.33e+01 1hmt b.60.1.2 27169 1qmyA 167 3.37e+01 1qmyA d.3.1.2 37094 1svpA 161 3.45e+01 1svpA b.47.1.3 26384 1mxmA 254 3.47e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1u4gA 301 3.50e+01 d.92.1.2 107670 1jmxB 349 3.54e+01 b.69.2.2 66906 1t2jA 116 3.55e+01 1y89A 238 3.55e+01 1wckA 220 3.58e+01 1pqhA 143 3.59e+01 b.52.2.1 95017 1sb2A 133 3.74e+01 2gjgA 248 3.86e+01 2bu3A 254 3.89e+01 1qw1A 121 3.91e+01 1qtnA 164 3.92e+01 1pauA c.17.1.1 30999 1wdcB 156 3.96e+01 1wdcB a.39.1.5 17302 1kk8B 139 4.00e+01 a.39.1.5 77430 1z5yE 149 4.13e+01 1i8kB 124 4.13e+01 b.1.1.1 71131 1zk5A 176 4.23e+01 1eny 268 4.45e+01 1eny c.2.1.2 29910 2g76A 335 4.47e+01 1f5nA 592 4.52e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 2fk9A 157 4.54e+01 1tp6A 128 4.57e+01 d.17.4.12 107184 1dro 122 4.63e+01 1btn b.55.1.1 26954 1xfsA 178 4.65e+01 d.129.3.5 109589 1lucB 324 4.66e+01 1lucA c.1.16.1 29548 2axcA 264 4.67e+01 1obdA 306 4.73e+01 d.143.1.1 86767 1ut7A 171 4.74e+01 b.143.1.1 99906 1snnA 227 4.75e+01 d.115.1.2 105821 1jssA 224 4.88e+01 d.129.3.2 71844 1m4vA 204 4.95e+01 b.40.2.2,d.15.6.1 74459,74460 1oeyA 83 5.00e+01 d.15.2.2 92800 1dp4A 435 5.16e+01 1dp4A c.93.1.1 35710 1f7dA 136 5.25e+01 1dun b.85.4.1 28353 1uwvA 433 5.25e+01 b.40.4.12,c.66.1.40 100128,100129 1w4vA 119 5.37e+01 1o9wA 177 5.43e+01 b.2.3.5 86713 2ew2A 316 5.43e+01 1zud2 66 5.47e+01 2a6hC 1119 5.55e+01 8fabB 224 5.58e+01 1igtB b.1.1.1,b.1.1.2 19773,20883 1zmaA 118 5.63e+01 1vddA 228 5.67e+01 e.49.1.1 108519 1h8pA 109 5.68e+01 g.14.1.2,g.14.1.2 70916,70917 1l5xA 280 5.77e+01 c.106.1.1 77718 2aq8A 269 5.85e+01 1g1cA 99 5.90e+01 b.1.1.4 65078 1odkA 235 5.91e+01 c.56.2.1 86863 1v5vA 401 5.93e+01 1drw 273 5.93e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1hyxH 224 6.08e+01 1igtB b.1.1.1,b.1.1.2 20167,21191 1xovA 326 6.12e+01 1o6sB 105 6.14e+01 b.1.6.1 81096 1iq4A 179 6.17e+01 1iq4A d.77.1.1 62641 1y96B 85 6.35e+01 1tif 78 6.39e+01 1tif d.15.8.1 37836 1gmyA 261 6.41e+01 d.3.1.1 76236 1k3xA 262 6.55e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1k3yA 221 6.57e+01 a.45.1.1,c.47.1.5 77245,77246 1y2tA 142 6.61e+01 1zc3B 113 6.69e+01 1a12A 413 6.69e+01 1a12A b.69.5.1 27663 1rq6A 62 6.78e+01 1jlyA 304 6.79e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1uz8B 212 6.91e+01 b.1.1.1,b.1.1.2 108168,108169 1xh3A 276 6.93e+01 1nofA 383 6.94e+01 b.71.1.2,c.1.8.3 92020,92021 1p1lA 102 6.95e+01 d.58.5.2 87695 1dqiA 124 7.01e+01 1do6A b.1.13.1 22357 1x0vA 354 7.10e+01 1ok7A 366 7.15e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 2fs3A 282 7.23e+01 1vrbA 342 7.26e+01 1jm1A 204 7.36e+01 b.33.1.1 71745 1t7lA 766 7.38e+01 1gttA 429 7.41e+01 d.177.1.1,d.177.1.1 70529,70530 1k07A 263 7.45e+01 d.157.1.1 77218 1ybiA 288 7.52e+01 2a7mA 250 7.57e+01 2coeA 120 7.61e+01 1wcgA 464 7.61e+01 1zvnA 99 7.62e+01 1cfb 205 7.65e+01 1cfb b.1.2.1,b.1.2.1 21991,21992 1vrmA 325 7.71e+01 1ei5A 520 7.72e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1dkiA 371 7.82e+01 1dkiA d.3.1.1 37090 1qwdA 177 7.92e+01 b.60.1.1 96471 2cu3A 64 7.97e+01 2cioA 212 8.02e+01 1xodA 118 8.13e+01 1khqA 212 8.21e+01 d.3.1.1 90964 1dzfA 215 8.26e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1p0hA 318 8.34e+01 d.108.1.1 93866 1wvfA 520 8.38e+01 1s6lA 212 8.43e+01 1ijtA 128 8.51e+01 1bfg b.42.1.1 62510 1l5wA 796 8.52e+01 c.87.1.4 73605 1f89A 291 8.52e+01 d.160.1.1 64988 1tuhA 156 8.59e+01 d.17.4.11 107345 1ok0A 74 8.61e+01 b.5.1.1 93191 2c27A 315 8.66e+01 1w6sA 599 8.68e+01 1twiA 434 8.78e+01 b.49.2.3,c.1.6.1 107399,107400 1qhoA 686 8.80e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1gxuA 91 8.96e+01 d.58.10.1 76378 1pk6B 132 8.96e+01 b.22.1.1 94802