# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b7yB 785 3.49e-02 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1xngA 268 2.96e-01 1g5cA 170 5.65e-01 1g5cA c.53.2.1 60264 1dceB 331 7.97e-01 1dceB a.102.4.3 18872 1el5A 389 7.98e-01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1iq4A 179 8.68e-01 1iq4A d.77.1.1 62641 1po5A 476 9.60e-01 a.104.1.1 94963 1cxqA 162 1.10e+00 1cxqA c.55.3.2 33621 1snnA 227 1.28e+00 d.115.1.2 105821 1tif 78 1.40e+00 1tif d.15.8.1 37836 1gmyA 261 1.50e+00 d.3.1.1 76236 1i2aA 219 1.50e+00 e.24.1.1 90660 1k3iA 656 1.87e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1ps1A 337 1.93e+00 1ps1A a.128.1.4 19450 2d13A 227 1.94e+00 2f9lA 199 2.23e+00 1lbvA 252 2.29e+00 e.7.1.1 73813 1bkf 107 2.51e+00 1fkj d.26.1.1 38382 2cokA 113 2.57e+00 1j8mF 297 2.67e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1pvdA 537 3.02e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1yovA 537 3.18e+00 1b43A 340 3.31e+00 1a76 a.60.7.1,c.120.1.2 18092,33362 1dq3A 454 3.35e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1ykjA 394 3.90e+00 1j83A 180 4.23e+00 b.18.1.12 66430 1vlmA 219 4.34e+00 c.66.1.41 108836 1aop 497 4.39e+00 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1k0iA 394 4.47e+00 c.3.1.2,d.16.1.2 67942,67943 1h05A 146 5.09e+00 c.23.13.1 76433 2cxaA 256 5.54e+00 1pzgA 331 5.71e+00 c.2.1.5,d.162.1.1 95425,95426 1vckA 115 6.52e+00 1at3A 247 6.76e+00 1at3A b.57.1.1 27021 1cqqA 180 6.77e+00 1cqqA b.47.1.4 26422 1hlvA 131 7.00e+00 a.4.1.7,a.4.1.7 65854,65855 2f2gA 221 7.53e+00 2fyxA 143 7.81e+00 1qxoA 388 7.92e+00 d.258.1.1 96539 2g76A 335 8.41e+00 1tzyD 103 8.88e+00 a.22.1.1 107533 1qzzA 374 9.16e+00 a.4.5.29,c.66.1.12 96719,96720 1lgpA 116 9.23e+00 b.26.1.2 73890 1qsgA 265 9.39e+00 1eny c.2.1.2 29935 1wi6A 88 9.87e+00 1a62 130 1.01e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1ok0A 74 1.10e+01 b.5.1.1 93191 1vhqA 232 1.14e+01 c.23.16.2 100696 1ewkA 490 1.16e+01 1ewkA c.93.1.1 35712 1odkA 235 1.27e+01 c.56.2.1 86863 1wcwA 261 1.35e+01 1oaqL 120 1.40e+01 b.1.1.1 92708 1q7hA 153 1.40e+01 b.122.1.1,d.17.6.2 96042,96043 2a6hC 1119 1.47e+01 1uv4A 293 1.51e+01 2pii 112 1.51e+01 2pii d.58.5.1 39071 1nezG 128 1.54e+01 b.1.1.1 85592 2bcmA 165 1.55e+01 1jbeA 128 1.59e+01 3chy c.23.1.1 62845 1k4iA 233 1.79e+01 d.115.1.2 72056 1a76 326 1.82e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 2g6bA 180 1.82e+01 2aq8A 269 1.88e+01 1chmA 401 1.90e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1m32A 366 1.90e+01 c.67.1.3 78508 1y96A 86 1.96e+01 2f5gA 133 1.98e+01 1t5iA 172 2.06e+01 c.37.1.19 106450 1rsy 152 2.20e+01 1rsy b.7.1.2 23192 1xwyA 264 2.29e+01 1ta0A 197 2.30e+01 c.108.1.16 106729 1h97A 147 2.36e+01 1h97A a.1.1.2 60812 1rypI 222 2.36e+01 d.153.1.4 41877 1mxrA 375 2.42e+01 a.25.1.2 85197 2gjgA 248 2.50e+01 2djkA 133 2.52e+01 1tocR 120 2.66e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1v6tA 255 2.71e+01 1lmmA 40 2.72e+01 g.3.6.2 91080 1dz3A 130 2.74e+01 1dz3A c.23.1.1 31105 1ek0A 170 2.79e+01 1ctqA c.37.1.8 32076 1gzsB 165 2.87e+01 a.168.1.1 76425 1wd7A 261 2.95e+01 1wy7A 207 2.98e+01 1ew0A 130 2.98e+01 1drmA d.110.3.2 40905 1ut9A 609 3.05e+01 a.102.1.2,b.1.18.2 99912,99913 1w85I 49 3.07e+01 1gxuA 91 3.08e+01 d.58.10.1 76378 1zczA 464 3.09e+01 1gefA 123 3.26e+01 1gefA c.52.1.18 60465 1fmtA 314 3.28e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1fdr 248 3.33e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1no1A 126 3.34e+01 a.179.1.1 85913 1wh5A 80 3.34e+01 1vj2A 126 3.36e+01 b.82.1.10 100796 2g9iA 249 3.39e+01 1nycA 111 3.48e+01 b.61.2.2 92336 1mp1A 111 3.49e+01 a.188.1.1 91382 2pvbA 107 3.72e+01 1a75A a.39.1.4 17205 1qtnA 164 3.72e+01 1pauA c.17.1.1 30999 1o9wA 177 3.74e+01 b.2.3.5 86713 1z2lA 423 3.75e+01 2d4qA 257 3.82e+01 1eny 268 3.90e+01 1eny c.2.1.2 29910 1zrjA 50 3.92e+01 1l6rA 227 3.95e+01 c.108.1.10 77768 1q79A 514 3.97e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1izcA 339 3.97e+01 c.1.12.5 83838 1j2gA 319 4.01e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1bb8 71 4.07e+01 2bb8 d.10.1.1 37478 1cjwA 166 4.14e+01 1cjwA d.108.1.1 40818 1yz1A 174 4.16e+01 1ee6A 197 4.16e+01 1ee6A b.80.1.1 28024 1lba 146 4.18e+01 1lba d.118.1.1 41062 1kb9D 246 4.21e+01 a.3.1.3,f.23.11.1 77317,77318 1t13A 158 4.21e+01 1gpmA 525 4.21e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1qw1A 121 4.24e+01 1h6kZ 98 4.26e+01 d.58.7.1 60686 1vp4A 425 4.29e+01 2fkbA 180 4.31e+01 1jalA 363 4.33e+01 c.37.1.8,d.15.10.2 84138,84139 1zk5A 176 4.36e+01 2ffcA 353 4.39e+01 1pqhA 143 4.43e+01 b.52.2.1 95017 1dgwA 178 4.49e+01 1dgwA b.82.1.2 28090 2fgeA 995 4.52e+01 1z3eB 73 4.63e+01 1vr0A 247 4.66e+01 1wy5A 317 4.67e+01 1s1hC 192 4.78e+01 i.1.1.1 105156 1dzaA 129 4.86e+01 7rsa d.5.1.1 37275 1o4wA 147 4.91e+01 c.120.1.1 86629 1oygA 447 4.91e+01 b.67.2.2 93726 1eziA 228 5.05e+01 1eyrA c.68.1.13 34512 2a7yA 83 5.10e+01 1cfr 285 5.14e+01 1cfr c.52.1.7 33312 1q1vA 70 5.20e+01 a.159.4.1 104479 1vcoA 550 5.28e+01 c.23.16.1,c.37.1.10 108508,108509 1tafB 70 5.32e+01 1tafB a.22.1.3 16482 1v74B 87 5.37e+01 a.24.20.1 100443 1i4uA 181 5.59e+01 b.60.1.1 61732 1jssA 224 5.60e+01 d.129.3.2 71844 1zx2A 147 5.63e+01 2gtrA 261 5.76e+01 1vjgA 218 5.79e+01 c.23.10.6 100810 2gf9A 189 5.83e+01 1xmxA 385 5.94e+01 1ybiA 288 5.96e+01 1qmeA 702 6.07e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1tuzA 118 6.09e+01 1rwiA 270 6.27e+01 b.68.9.1 97987 1ru4A 400 6.30e+01 b.80.1.9 97836 1p7tA 731 6.32e+01 c.1.13.1 94319 1u24A 337 6.46e+01 1wr8A 231 6.55e+01 1keaA 221 6.56e+01 a.96.1.2 68491 2aotA 292 6.88e+01 2absA 383 6.89e+01 1ulrA 88 6.89e+01 1a4pA 96 6.95e+01 1b4cA a.39.1.2 17176 1f7lA 121 7.02e+01 1f7lA d.150.1.2 59666 1vphA 149 7.04e+01 1dro 122 7.08e+01 1btn b.55.1.1 26954 1oksA 56 7.08e+01 a.8.5.1 93271 1y9wA 140 7.16e+01 1x1rA 178 7.17e+01 1io2A 213 7.17e+01 1ekeA c.55.3.1 62612 1k4mA 213 7.29e+01 c.26.1.3 77258 1xj4A 119 7.31e+01 1gnkA 112 7.35e+01 2pii d.58.5.1 39073 1n91A 108 7.36e+01 d.206.1.1 80326 1klxA 138 7.49e+01 a.118.18.1 77440 1s35A 214 7.52e+01 a.7.1.1,a.7.1.1 98420,98421 1ytaA 180 7.66e+01 1o6sB 105 7.66e+01 b.1.6.1 81096 2genA 197 7.73e+01 1uf3A 228 7.74e+01 d.159.1.6 99317 1jkzA 46 7.80e+01 g.3.7.5 66820 1sqhA 312 7.81e+01 d.108.1.5 98966 1i58A 189 7.89e+01 1b3qA d.122.1.3 61773 1bywA 110 7.90e+01 1bywA d.110.3.6 40912 1zxfA 155 7.92e+01 1cb8A 678 7.93e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1i8nA 126 8.03e+01 1i8nA g.10.1.2 61976 2blnA 305 8.08e+01 1fnd 314 8.09e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1jmvA 141 8.09e+01 c.26.2.4 66897 1p6oA 161 8.15e+01 c.97.1.2 94185 1uz5A 402 8.26e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1jb9A 316 8.27e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1jwiB 125 8.29e+01 d.169.1.1 67384 1yb2A 275 8.35e+01 1zmoA 244 8.43e+01 1b63A 333 8.48e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1wznA 252 8.49e+01 1u96A 69 8.51e+01 1y9iA 178 8.56e+01 1s6cA 183 8.66e+01 a.39.1.5 98594 1iw0A 215 8.80e+01 a.132.1.1 83720