# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 7.55e-01 1lvwA 295 1.46e+00 c.68.1.6 84723 1el5A 389 1.70e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1chmA 401 2.11e+00 1chmA c.55.2.1,d.127.1.1 33545,41142 1gmyA 261 2.59e+00 d.3.1.1 76236 2a7yA 83 2.94e+00 1wosA 364 3.50e+00 b.44.2.1,d.250.1.1 109468,109469 1p5dX 463 4.47e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1xcbA 211 4.73e+00 a.4.5.38,c.2.1.12 109552,109553 1nezG 128 4.82e+00 b.1.1.1 85592 1dgwA 178 5.17e+00 1dgwA b.82.1.2 28090 1iloA 77 5.50e+00 c.47.1.1 66205 1rsy 152 5.81e+00 1rsy b.7.1.2 23192 2d13A 227 5.92e+00 1dq3A 454 7.00e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1iq4A 179 7.09e+00 1iq4A d.77.1.1 62641 1yovA 537 7.99e+00 1wy2A 351 8.03e+00 2f5tX 233 8.06e+00 1r26A 125 9.94e+00 c.47.1.1 96847 1lgpA 116 1.07e+01 b.26.1.2 73890 2gxfA 142 1.07e+01 1hgxA 183 1.08e+01 1tc1A c.61.1.1 34027 1zvhA 134 1.29e+01 1vckA 115 1.35e+01 1wckA 220 1.37e+01 2cokA 113 1.38e+01 1v8hA 107 1.44e+01 1s68A 249 1.45e+01 d.142.2.4 98591 1svpA 161 1.48e+01 1svpA b.47.1.3 26384 1k3iA 656 1.57e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1jssA 224 1.61e+01 d.129.3.2 71844 1u24A 337 1.71e+01 1cb8A 678 1.74e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1mvfA 135 1.79e+01 b.1.1.1 85141 2fimA 276 1.80e+01 1vrmA 325 1.81e+01 1ub3A 220 1.89e+01 c.1.10.1 88395 1io1A 398 2.09e+01 1io1A e.32.1.1 62611 1xfpA 142 2.21e+01 b.1.1.1 109587 1j8mF 297 2.38e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 2axcA 264 2.46e+01 1u6zA 513 2.46e+01 1ru4A 400 2.48e+01 b.80.1.9 97836 1x99A 145 2.50e+01 1yu0A 381 2.57e+01 1ee6A 197 2.59e+01 1ee6A b.80.1.1 28024 1o6sB 105 2.63e+01 b.1.6.1 81096 1tif 78 2.65e+01 1tif d.15.8.1 37836 1sb2A 133 2.88e+01 1upiA 225 2.92e+01 b.82.1.1 99757 1ekgA 127 2.94e+01 1dlxA d.82.2.1 40021 1twfA 1733 3.16e+01 1ut7A 171 3.38e+01 b.143.1.1 99906 1rzfL 213 3.44e+01 b.1.1.1,b.1.1.2 98152,98153 1m4vA 204 3.57e+01 b.40.2.2,d.15.6.1 74459,74460 2bu3A 254 3.65e+01 2fvgA 340 3.68e+01 1wqsA 173 3.77e+01 1qmeA 702 3.78e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1s3cA 141 3.82e+01 2blnA 305 3.85e+01 2azwA 148 3.94e+01 1pk6B 132 4.00e+01 b.22.1.1 94802 1tp6A 128 4.10e+01 d.17.4.12 107184 1i0rA 169 4.13e+01 1i0rA b.45.1.2 61489 1f06A 320 4.15e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 2fp4B 395 4.25e+01 1gpmA 525 4.25e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1qw1A 121 4.28e+01 1fsgA 233 4.33e+01 1qk3A c.61.1.1 34029 1u0qA 125 4.40e+01 1vfgA 390 4.45e+01 a.173.1.1,d.218.1.4 108570,108571 1x0vA 354 4.45e+01 1uv4A 293 4.46e+01 1zmaA 118 4.54e+01 1cv8 174 4.64e+01 1cv8 d.3.1.1 37089 2ew2A 316 4.73e+01 1jbeA 128 4.74e+01 3chy c.23.1.1 62845 1ofdA 1520 4.88e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1dz3A 130 4.91e+01 1dz3A c.23.1.1 31105 1wu7A 434 4.96e+01 1k3xA 262 4.98e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1l5xA 280 5.04e+01 c.106.1.1 77718 1pmzA 86 5.21e+01 a.39.1.10 104195 1xauA 122 5.21e+01 2g5dA 422 5.22e+01 1tuhA 156 5.36e+01 d.17.4.11 107345 1s6lA 212 5.42e+01 1eny 268 5.55e+01 1eny c.2.1.2 29910 1im3D 95 5.58e+01 1im3D b.1.18.5 62568 1rq6A 62 5.72e+01 1qhoA 686 5.73e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1o9wA 177 5.76e+01 b.2.3.5 86713 1ok0A 74 5.77e+01 b.5.1.1 93191 1mbmA 198 5.77e+01 b.47.1.3 78916 1cojA 212 5.82e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1kk8B 139 5.83e+01 a.39.1.5 77430 2djkA 133 5.88e+01 2bvbA 137 5.94e+01 2aq8A 269 6.05e+01 2cxaA 256 6.09e+01 1f5nA 592 6.20e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1a12A 413 6.21e+01 1a12A b.69.5.1 27663 1nycA 111 6.37e+01 b.61.2.2 92336 1bn7A 294 6.37e+01 1bn6A c.69.1.8 34677 1drw 273 6.38e+01 1drw c.2.1.3,d.81.1.3 30057,39972 2absA 383 6.42e+01 1qtnA 164 6.64e+01 1pauA c.17.1.1 30999 1gttA 429 6.71e+01 d.177.1.1,d.177.1.1 70529,70530 1e8yA 966 6.74e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2fk9A 157 6.90e+01 1n7oA 721 6.91e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1fvuB 125 7.01e+01 1ixxB d.169.1.1 42346 1y89A 238 7.35e+01 1oaqL 120 7.47e+01 b.1.1.1 92708 1xfsA 178 7.49e+01 d.129.3.5 109589 1i8nA 126 7.52e+01 1i8nA g.10.1.2 61976 1xer 103 7.57e+01 1xer d.58.1.3 38990 1zo0A 126 7.62e+01 1fiqC 763 7.64e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1y2tA 142 7.70e+01 2b8wA 328 7.73e+01 1v10A 521 7.85e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1wdcB 156 7.90e+01 1wdcB a.39.1.5 17302 1t7lA 766 7.90e+01 1gycA 499 7.90e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1tzyD 103 8.00e+01 a.22.1.1 107533 1rwiA 270 8.13e+01 b.68.9.1 97987 1dg6A 191 8.14e+01 1d4vB b.22.1.1 23883 1f3uA 118 8.17e+01 1f3uA b.65.1.1 27521 1t64A 377 8.18e+01 c.42.1.2 106543 1nofA 383 8.44e+01 b.71.1.2,c.1.8.3 92020,92021 1f7dA 136 8.47e+01 1dun b.85.4.1 28353 1yg6A 193 8.47e+01 2fzsA 193 8.52e+01 1k24A 253 8.58e+01 f.4.4.2 72002 1hmt 132 8.61e+01 1hmt b.60.1.2 27169 1nkqA 259 8.62e+01 d.177.1.1 103862 1w85I 49 8.65e+01 1qsgA 265 8.65e+01 1eny c.2.1.2 29935 2g6fX 59 8.75e+01 1snnA 227 8.75e+01 d.115.1.2 105821 1hf2A 210 8.78e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1qr0A 228 8.98e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039