# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dq3A 454 4.67e-01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1k3iA 656 9.05e-01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1xngA 268 1.02e+00 1rsy 152 1.51e+00 1rsy b.7.1.2 23192 1mvfA 135 1.60e+00 b.1.1.1 85141 1el5A 389 1.98e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1xfpA 142 2.13e+00 b.1.1.1 109587 1xcbA 211 2.29e+00 a.4.5.38,c.2.1.12 109552,109553 1p5dX 463 2.49e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1nezG 128 2.78e+00 b.1.1.1 85592 1gmyA 261 2.83e+00 d.3.1.1 76236 2cokA 113 2.91e+00 1lvwA 295 3.04e+00 c.68.1.6 84723 2gxfA 142 3.35e+00 1chmA 401 3.59e+00 1chmA c.55.2.1,d.127.1.1 33545,41142 1zvyA 136 4.16e+00 1v8hA 107 4.25e+00 1rzfL 213 4.46e+00 b.1.1.1,b.1.1.2 98152,98153 1wy2A 351 4.73e+00 1wu7A 434 5.26e+00 1ekgA 127 5.60e+00 1dlxA d.82.2.1 40021 1qtnA 164 5.79e+00 1pauA c.17.1.1 30999 1cojA 212 6.04e+00 1avmA a.2.11.1,d.44.1.1 15737,38734 2ew2A 316 6.13e+00 1iloA 77 6.24e+00 c.47.1.1 66205 1dgwA 178 6.24e+00 1dgwA b.82.1.2 28090 1zvhA 134 6.69e+00 1u0qA 125 6.98e+00 1yu0A 381 7.14e+00 1l9kA 305 7.56e+00 c.66.1.25 84569 1qmeA 702 7.76e+00 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2d13A 227 8.98e+00 1r26A 125 9.29e+00 c.47.1.1 96847 1m4vA 204 9.33e+00 b.40.2.2,d.15.6.1 74459,74460 1fvuB 125 9.65e+00 1ixxB d.169.1.1 42346 2g6fX 59 9.86e+00 2a7yA 83 1.03e+01 1io1A 398 1.04e+01 1io1A e.32.1.1 62611 1t7lA 766 1.06e+01 1gttA 429 1.07e+01 d.177.1.1,d.177.1.1 70529,70530 1uv4A 293 1.09e+01 1s3cA 141 1.10e+01 2fvgA 340 1.17e+01 1xfsA 178 1.17e+01 d.129.3.5 109589 1o4sA 389 1.21e+01 c.67.1.1 86620 1xodA 118 1.24e+01 2ahrA 259 1.27e+01 2a2pA 129 1.33e+01 2f5tX 233 1.34e+01 1kuuA 202 1.39e+01 d.153.2.1 73019 1ee6A 197 1.41e+01 1ee6A b.80.1.1 28024 1wosA 364 1.44e+01 b.44.2.1,d.250.1.1 109468,109469 1nkqA 259 1.44e+01 d.177.1.1 103862 1dqiA 124 1.46e+01 1do6A b.1.13.1 22357 1i8nA 126 1.51e+01 1i8nA g.10.1.2 61976 1eny 268 1.58e+01 1eny c.2.1.2 29910 1obdA 306 1.58e+01 d.143.1.1 86767 1yc7A 124 1.59e+01 2aq8A 269 1.62e+01 1tzyD 103 1.64e+01 a.22.1.1 107533 1u24A 337 1.66e+01 1wxrA 1048 1.69e+01 1iyhA 198 1.71e+01 a.45.1.1,c.47.1.5 83790,83791 1gpmA 525 1.71e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1lgpA 116 1.72e+01 b.26.1.2 73890 1w85I 49 1.74e+01 1mqkH 127 1.75e+01 b.1.1.1 85053 1yg6A 193 1.77e+01 2fzsA 193 1.78e+01 2g76A 335 1.80e+01 1wlyA 333 1.82e+01 1wy5A 317 1.83e+01 1cb8A 678 1.86e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2azwA 148 1.86e+01 2axcA 264 1.89e+01 1rq6A 62 1.92e+01 1jbeA 128 1.93e+01 3chy c.23.1.1 62845 2bu3A 254 1.95e+01 1ub3A 220 2.00e+01 c.1.10.1 88395 2fimA 276 2.08e+01 2gjgA 248 2.10e+01 1yoxA 250 2.11e+01 1os8A 223 2.19e+01 b.47.1.1 93481 1vkiA 181 2.29e+01 d.116.1.1 108664 1po5A 476 2.31e+01 a.104.1.1 94963 2blnA 305 2.32e+01 1hyxH 224 2.35e+01 1igtB b.1.1.1,b.1.1.2 20167,21191 1jm1A 204 2.40e+01 b.33.1.1 71745 1f5nA 592 2.41e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1oeyA 83 2.42e+01 d.15.2.2 92800 1ofdA 1520 2.45e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1o6sB 105 2.50e+01 b.1.6.1 81096 1twiA 434 2.50e+01 b.49.2.3,c.1.6.1 107399,107400 1ru4A 400 2.53e+01 b.80.1.9 97836 1iq4A 179 2.56e+01 1iq4A d.77.1.1 62641 1hgxA 183 2.56e+01 1tc1A c.61.1.1 34027 1ws0A 156 2.57e+01 1eylA 186 2.65e+01 1wba b.42.4.1 25593 1a12A 413 2.66e+01 1a12A b.69.5.1 27663 2a7mA 250 2.67e+01 1w4vA 119 2.68e+01 1knmA 130 2.69e+01 b.42.2.1 72781 1x99A 145 2.70e+01 2c0zA 216 2.71e+01 1vddA 228 2.71e+01 e.49.1.1 108519 1y89A 238 2.72e+01 1upiA 225 2.79e+01 b.82.1.1 99757 1khqA 212 2.81e+01 d.3.1.1 90964 1nykA 165 2.87e+01 b.33.1.1 86408 1j8mF 297 2.94e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1tuhA 156 2.97e+01 d.17.4.11 107345 1x0vA 354 2.97e+01 2b8wA 328 2.99e+01 1wcgA 464 2.99e+01 1cfb 205 3.01e+01 1cfb b.1.2.1,b.1.2.1 21991,21992 1ra0A 430 3.04e+01 1vqoT 120 3.04e+01 1f7dA 136 3.05e+01 1dun b.85.4.1 28353 1g5cA 170 3.06e+01 1g5cA c.53.2.1 60264 1xh3A 276 3.11e+01 2g5dA 422 3.11e+01 1vfgA 390 3.12e+01 a.173.1.1,d.218.1.4 108570,108571 1f3uA 118 3.14e+01 1f3uA b.65.1.1 27521 1qw1A 121 3.20e+01 1nycA 111 3.31e+01 b.61.2.2 92336 1i8kB 124 3.35e+01 b.1.1.1 71131 1sb2A 133 3.38e+01 1tif 78 3.39e+01 1tif d.15.8.1 37836 1dp4A 435 3.41e+01 1dp4A c.93.1.1 35710 1uz8B 212 3.45e+01 b.1.1.1,b.1.1.2 108168,108169 2cioA 212 3.47e+01 1lucB 324 3.48e+01 1lucA c.1.16.1 29548 1k3yA 221 3.51e+01 a.45.1.1,c.47.1.5 77245,77246 2cvdA 198 3.54e+01 1uwvA 433 3.68e+01 b.40.4.12,c.66.1.40 100128,100129 1f8fA 371 3.69e+01 b.35.1.2,c.2.1.1 83246,83247 1gxuA 91 3.70e+01 d.58.10.1 76378 1jmxB 349 3.79e+01 b.69.2.2 66906 1s6lA 212 3.81e+01 1g1cA 99 3.83e+01 b.1.1.4 65078 2basA 431 3.83e+01 1snnA 227 3.87e+01 d.115.1.2 105821 1ybiA 288 3.88e+01 1v3yA 192 3.89e+01 1wiwA 290 3.90e+01 1pguA 615 4.00e+01 b.69.4.1,b.69.4.1 88069,88070 1czfA 362 4.07e+01 1czfA b.80.1.3 28031 2fp4B 395 4.28e+01 1neyA 247 4.32e+01 c.1.1.1 80449 1twfA 1733 4.37e+01 1xwyA 264 4.45e+01 1wfxA 186 4.45e+01 1qr0A 228 4.50e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1gyhA 318 4.52e+01 b.67.2.1 70757 1s68A 249 4.53e+01 d.142.2.4 98591 1x8dA 104 4.53e+01 1vrmA 325 4.54e+01 1o4wA 147 4.62e+01 c.120.1.1 86629 2absA 383 4.65e+01 1pyoA 167 4.66e+01 c.17.1.1 95370 1zmaA 118 4.71e+01 1vckA 115 4.88e+01 1wqsA 173 4.97e+01 1bxoA 323 5.03e+01 2er7E b.50.1.2 26805 1j83A 180 5.06e+01 b.18.1.12 66430 1vjgA 218 5.14e+01 c.23.10.6 100810 1g1tA 157 5.17e+01 d.169.1.1,g.3.11.1 65104,65105 1jssA 224 5.22e+01 d.129.3.2 71844 1nofA 383 5.22e+01 b.71.1.2,c.1.8.3 92020,92021 1g6gA 127 5.38e+01 1g6gA b.26.1.2 23916 1k07A 263 5.43e+01 d.157.1.1 77218 1svpA 161 5.46e+01 1svpA b.47.1.3 26384 1e4cP 215 5.56e+01 2fua c.74.1.1 34969 1cxqA 162 5.63e+01 1cxqA c.55.3.2 33621 1b2pA 119 5.65e+01 1b2pA b.78.1.1 27998 1z5yE 149 5.70e+01 1fsgA 233 5.74e+01 1qk3A c.61.1.1 34029 1a2yB 116 5.74e+01 1gc1H b.1.1.1 19927 1i4fA 275 5.76e+01 1agdA b.1.1.2,d.19.1.1 61687,61688 1mfgA 95 5.82e+01 b.36.1.1 79043 1vj7A 393 5.88e+01 a.211.1.1,d.218.1.8 100801,100802 1sglA 209 5.90e+01 d.124.1.1 105536 1o9wA 177 5.93e+01 b.2.3.5 86713 1qsgA 265 5.94e+01 1eny c.2.1.2 29935 1rwiA 270 5.99e+01 b.68.9.1 97987 1z3eB 73 6.07e+01 1m6yA 301 6.10e+01 a.60.13.1,c.66.1.23 78716,78717 2af4C 333 6.14e+01 1ok7A 366 6.15e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1v74B 87 6.21e+01 a.24.20.1 100443 2aotA 292 6.30e+01 1dz3A 130 6.32e+01 1dz3A c.23.1.1 31105 1lba 146 6.36e+01 1lba d.118.1.1 41062 1bfg 146 6.38e+01 1bfg b.42.1.1 25485 1f7sA 139 6.43e+01 1cof d.109.1.2 40857 1bb8 71 6.44e+01 2bb8 d.10.1.1 37478 1xovA 326 6.52e+01 1ut7A 171 6.53e+01 b.143.1.1 99906 2bkdN 134 6.56e+01 1uaiA 224 6.61e+01 b.29.1.18 107761 1n4xH 120 6.68e+01 b.1.1.1 85324 1gzcA 239 6.81e+01 b.29.1.1 70803 1mhnA 59 6.83e+01 b.34.9.1 84964 2axwA 134 6.83e+01 1t2jA 116 6.84e+01 1tuaA 191 6.84e+01 d.51.1.1,d.51.1.1 107321,107322 2fd6U 276 6.84e+01 2coeA 120 6.90e+01 2gfaA 119 6.93e+01 1kmqA 184 6.96e+01 c.37.1.8 84412 1kk8B 139 6.97e+01 a.39.1.5 77430 1f89A 291 7.05e+01 d.160.1.1 64988 2b4hA 254 7.11e+01 1oygA 447 7.15e+01 b.67.2.2 93726 1neu 124 7.23e+01 1neu b.1.1.1 19704 1jwiB 125 7.23e+01 d.169.1.1 67384 1tafB 70 7.24e+01 1tafB a.22.1.3 16482 1xer 103 7.35e+01 1xer d.58.1.3 38990 2cu3A 64 7.39e+01 1y0yA 353 7.41e+01 1i40A 175 7.50e+01 b.40.5.1 66024 2g6bA 180 7.58e+01 1i7dA 659 7.59e+01 1d6mA e.10.1.1 61886 1oaqL 120 7.61e+01 b.1.1.1 92708 1x6zA 123 7.62e+01 2fyxA 143 7.63e+01 1k32A 1045 7.64e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1rcwA 231 7.67e+01 a.132.1.4 97299 8fabB 224 7.72e+01 1igtB b.1.1.1,b.1.1.2 19773,20883 1vf1A 229 7.72e+01 2ga9D 469 7.72e+01 1k0eA 453 7.73e+01 d.161.1.1 67938 1sawA 225 7.76e+01 1zvnA 99 7.80e+01 1pwaA 162 7.86e+01 b.42.1.1 95211 1gzsB 165 7.94e+01 a.168.1.1 76425 2acaA 189 7.94e+01 1zud2 66 7.98e+01 1wloA 136 7.99e+01 1m93C 41 7.99e+01 1l5xA 280 8.09e+01 c.106.1.1 77718 1u4gA 301 8.11e+01 d.92.1.2 107670 1z02A 446 8.15e+01 1u8fO 335 8.16e+01 1yovA 537 8.19e+01 1rjcA 137 8.27e+01 1mbmA 198 8.34e+01 b.47.1.3 78916 1ng7A 60 8.38e+01 a.178.1.1 85671 2c27A 315 8.43e+01 1xfjA 261 8.43e+01 d.194.1.2 109585 1avwB 171 8.45e+01 1wba b.42.4.1 25599 1i4uA 181 8.49e+01 b.60.1.1 61732 1x74A 360 8.49e+01 1odkA 235 8.57e+01 c.56.2.1 86863 1p90A 145 8.61e+01 c.55.5.2 94377 1zrjA 50 8.63e+01 1dg6A 191 8.65e+01 1d4vB b.22.1.1 23883 1v6tA 255 8.75e+01 1x0pA 143 8.78e+01 2a4aA 281 8.79e+01 1mkfA 382 8.83e+01 b.116.1.1 79232 1fp0A 88 8.84e+01 1fp0A g.50.1.2 45361 1tjyA 316 8.93e+01 c.93.1.1 107062 1xzoA 174 8.99e+01