# List of top-scoring protein chains for T0316.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b7yB 785 5.80e-01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1eal 127 1.21e+00 1hmt b.60.1.2 27227 1ok0A 74 1.97e+00 b.5.1.1 93191 1iq4A 179 2.18e+00 1iq4A d.77.1.1 62641 1s1iH 191 4.30e+00 i.1.1.1 105182 1mkeA 152 5.30e+00 b.55.1.4 79231 1xrtA 467 7.77e+00 1po5A 476 7.78e+00 a.104.1.1 94963 1zovA 386 7.89e+00 1t2xA 639 8.53e+00 b.1.18.2,b.18.1.1,b.69.1.1 106292,106293,106294 1gof 639 8.53e+00 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1k3iA 656 8.55e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1yaaA 412 8.68e+00 1ajsA c.67.1.1 34280 1mjiA 182 8.71e+00 d.77.1.1 79208 1xngA 268 9.03e+00 1suoA 476 9.71e+00 a.104.1.1 106026 1o1uA 127 1.03e+01 b.60.1.2 81076 1ydlA 79 1.07e+01 1m5xA 170 1.09e+01 d.95.2.1 84844 1hm7A 336 1.11e+01 a.128.1.4 76719 2aw4F 178 1.21e+01 1m94A 93 1.23e+01 d.15.1.1 78865 2azqA 311 1.32e+01 1qdqA 253 1.37e+01 1theB d.3.1.1 37064 1cicA 214 1.40e+01 8fabA b.1.1.1,b.1.1.2 19964,21024 1l9cA 389 1.43e+01 c.3.1.2,d.16.1.3 77815,77816 1el5A 389 1.48e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1g5cA 170 1.51e+01 1g5cA c.53.2.1 60264 1oy1A 228 1.58e+01 c.23.16.2 87548 1vhqA 232 1.61e+01 c.23.16.2 100696 1lbvA 252 1.79e+01 e.7.1.1 73813 1ojt 482 1.84e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30581,30582,40212 1bhy 482 1.85e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30583,30584,40213 1ps1A 337 1.88e+01 1ps1A a.128.1.4 19450 1j83A 180 1.96e+01 b.18.1.12 66430 1dn0B 232 2.11e+01 1igtB b.1.1.1,b.1.1.2 19831,20935 1ntyA 311 2.11e+01 a.87.1.1,b.55.1.1 103873,103874 1qlrB 232 2.12e+01 1igtB b.1.1.1,b.1.1.2 19835,20939 1dq3A 454 2.13e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1r4mA 529 2.14e+01 c.111.1.2 96999 1tt5A 531 2.14e+01 c.111.1.2 107291 1yovA 537 2.18e+01 1eoaA 209 2.45e+01 3pchA b.3.6.1 22732 1g47A 77 2.49e+01 1g47A g.39.1.3,g.39.1.3 45147,45148 1bn7A 294 2.54e+01 1bn6A c.69.1.8 34677 1xwyA 264 2.56e+01 1eymA 107 2.60e+01 1fkj d.26.1.1 38403 1eo9A 209 2.60e+01 3pchA b.3.6.1 22731 1mioA 533 2.65e+01 1qguA c.92.2.3 35601 1cteA 254 2.67e+01 1theB d.3.1.1 37058 1bl4A 107 2.68e+01 1fkj d.26.1.1 38393 1theA 260 2.68e+01 1theB d.3.1.1 37056 1bkf 107 2.72e+01 1fkj d.26.1.1 38382 1qtfA 246 2.76e+01 1agjA b.47.1.1 25830 1dt2A 245 2.81e+01 b.47.1.1 76138 6cgt 684 2.83e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21837,22506,27744,28731 1vckA 115 2.84e+01 4cgt 678 2.97e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21825,22494,27732,28719 5cgt 684 2.97e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21824,22493,27731,28718 1cgt 684 2.98e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21815,22484,27722,28709 8cgtA 684 2.98e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21831,22500,27738,28725 1sm2A 264 3.01e+01 d.144.1.7 105754 1cqwA 295 3.11e+01 1b6g c.69.1.8 34679 1cqqA 180 3.21e+01 1cqqA b.47.1.4 26422 1mirA 322 3.32e+01 1theB d.3.1.1 37062 1tcoC 107 3.41e+01 1fkj d.26.1.1 38426 1awcB 153 3.44e+01 1bd8 d.211.1.1 19156 2a6hC 1119 3.51e+01 1fkj 107 3.64e+01 1fkj d.26.1.1 38384 1mc8A 343 3.81e+01 a.60.7.1,c.120.1.2 78945,78946 1sp4B 205 3.84e+01 1ev13 239 3.90e+01 1aym3 1nkwD 180 4.01e+01 i.1.1.2 80589 2dccA 256 4.02e+01 1vorG 178 4.03e+01 2fb4L 216 4.10e+01 8fabA b.1.1.1,b.1.1.2 19846,20950 1csbB 205 4.28e+01 1theB 1odkA 235 4.30e+01 c.56.2.1 86863 1b43A 340 4.33e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1fkl 107 4.35e+01 1fkj d.26.1.1 38423 1pswA 348 4.51e+01 c.87.1.7 88287 1cc1L 498 4.57e+01 1h2rL e.18.1.1 43301 1gmyA 261 4.62e+01 d.3.1.1 76236 1yc1A 264 4.63e+01 2dg4A 107 4.65e+01 1z7dA 433 4.66e+01 2a7yA 83 4.73e+01 1jvkA 216 4.76e+01 b.1.1.1,b.1.1.2 71897,71898 2aj3A 213 5.12e+01 1kbaA 66 5.16e+01 3ebx g.7.1.1 44431 3pbh 317 5.22e+01 1theB d.3.1.1 37053 1y0lA 216 5.29e+01 1jn6A 210 5.42e+01 b.1.1.1,b.1.1.2 66923,66924 1jnhA 212 5.43e+01 b.1.1.1,b.1.1.2 66939,66940 2ctkA 104 5.44e+01 1zs8A 274 5.55e+01 1ru8A 232 5.80e+01 c.26.2.1 97849 1nfdE 212 5.81e+01 8fabA b.1.1.1,b.1.1.2 20186,21202 2dg9A 107 5.83e+01 1ocwL 120 5.87e+01 b.1.1.1 92780 1fyvA 161 5.98e+01 1fyvA c.23.2.1 31127 1qmjA 132 6.04e+01 1c1lA b.29.1.3 24210 1lgqA 112 6.15e+01 b.26.1.2 73891 2b7aA 293 6.23e+01 1yat 113 6.27e+01 1fkj d.26.1.1 38427 1jwiB 125 6.32e+01 d.169.1.1 67384 1oaqL 120 6.52e+01 b.1.1.1 92708 1lba 146 6.68e+01 1lba d.118.1.1 41062 1wqsA 173 6.85e+01 1dl5A 317 6.99e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1oauL 110 6.99e+01 b.1.1.1 92721 2bjmL 110 7.09e+01 1flgA 582 7.09e+01 4aahA b.70.1.1 27682 1aroL 151 7.14e+01 1lba d.118.1.1 41063 1q0xL 212 7.14e+01 b.1.1.1,b.1.1.2 95519,95520 1n0wA 243 7.44e+01 c.37.1.11 79772 1tocR 120 7.66e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1rhhA 215 7.76e+01 b.1.1.1,b.1.1.2 97473,97474 1x4xA 106 7.79e+01 1mfaL 127 7.85e+01 1vr0A 247 7.96e+01 1x0vA 354 8.09e+01 1jmmA 377 8.12e+01 b.30.6.1 71749 1l9uC 1118 8.16e+01 i.8.1.1 73750 1i6vC 1118 8.16e+01 e.29.1.1 61856 1hqmC 1119 8.19e+01 i.8.1.1 45974 1ynjC 1119 8.19e+01 2cooA 70 8.38e+01 1es7A 116 8.45e+01 2tgi g.17.1.2 44786 1f89A 291 8.52e+01 d.160.1.1 64988 1rewA 114 8.63e+01 g.17.1.2 97334 1wpqA 349 8.64e+01 1mfeL 215 8.81e+01 1mfa b.1.1.1,b.1.1.2 19892,20986 1weuA 91 8.96e+01