# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1el5A 389 5.78e-01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1xngA 268 1.54e+00 1ru8A 232 1.66e+00 c.26.2.1 97849 1mvfA 135 1.72e+00 b.1.1.1 85141 1cb8A 678 1.90e+00 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1dgwA 178 1.92e+00 1dgwA b.82.1.2 28090 1nezG 128 2.27e+00 b.1.1.1 85592 1lvwA 295 2.85e+00 c.68.1.6 84723 1bqhG 129 3.10e+00 1cd8 b.1.1.1 19715 1k2yX 463 3.51e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2a7yA 83 3.69e+00 1p5dX 463 3.83e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1dq3A 454 3.85e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2d13A 227 6.40e+00 2a9mL 110 6.99e+00 1lfo 128 7.82e+00 1hmt b.60.1.2 27223 2gxfA 142 8.14e+00 1eo9A 209 8.23e+00 3pchA b.3.6.1 22731 1iloA 77 8.44e+00 c.47.1.1 66205 1xfpA 142 9.28e+00 b.1.1.1 109587 1ofdA 1520 9.51e+00 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1bymA 97 9.78e+00 1bi0 b.34.1.2 24458 1lgpA 116 1.00e+01 b.26.1.2 73890 1ekgA 127 1.06e+01 1dlxA d.82.2.1 40021 1rzfL 213 1.11e+01 b.1.1.1,b.1.1.2 98152,98153 1wosA 364 1.16e+01 b.44.2.1,d.250.1.1 109468,109469 1kx5B 102 1.24e+01 a.22.1.1 77594 1hq3D 103 1.25e+01 1aoiB a.22.1.1 16464 1tzyD 103 1.25e+01 a.22.1.1 107533 1ub3A 220 1.34e+01 c.1.10.1 88395 1ass 159 1.50e+01 1a6dA c.8.5.2 30818 1r26A 125 1.61e+01 c.47.1.1 96847 1riqA 465 1.65e+01 a.203.1.1,d.104.1.1 97516,97517 1cojA 212 1.68e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1nslA 184 1.71e+01 d.108.1.1 86137 2fimA 276 1.73e+01 1io1A 398 1.73e+01 1io1A e.32.1.1 62611 1g5cA 170 1.78e+01 1g5cA c.53.2.1 60264 2fvgA 340 1.85e+01 1yfsA 465 1.86e+01 1yezA 68 1.92e+01 2c0zA 216 1.95e+01 2f5tX 233 2.04e+01 1k3iA 656 2.10e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1p1jA 533 2.12e+01 c.2.1.3,d.81.1.3 87687,87688 1xcbA 211 2.17e+01 a.4.5.38,c.2.1.12 109552,109553 1nycA 111 2.27e+01 b.61.2.2 92336 1gpmA 525 2.27e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1rsy 152 2.36e+01 1rsy b.7.1.2 23192 1yu0A 381 2.38e+01 1hmt 132 2.39e+01 1hmt b.60.1.2 27169 2blnA 305 2.42e+01 2cokA 113 2.43e+01 2djkA 133 2.43e+01 1yu1A 381 2.49e+01 1yu4A 381 2.57e+01 1x0pA 143 2.67e+01 1gof 639 2.70e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 2a9mH 126 2.71e+01 2azwA 148 2.74e+01 1ebdC 41 2.76e+01 1ebdC a.9.1.1 16355 1ru4A 400 2.89e+01 b.80.1.9 97836 1o0wA 252 2.92e+01 a.149.1.1,d.50.1.1 80751,80752 1twfA 1733 2.95e+01 1i50A 1733 2.96e+01 e.29.1.2 61754 1chmA 401 2.99e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1wy2A 351 3.08e+01 1k3xA 262 3.28e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1f7dA 136 3.29e+01 1dun b.85.4.1 28353 1upiA 225 3.29e+01 b.82.1.1 99757 1h8pA 109 3.35e+01 g.14.1.2,g.14.1.2 70916,70917 1x99A 145 3.42e+01 1yu2A 381 3.51e+01 1pk6B 132 3.51e+01 b.22.1.1 94802 2ew2A 316 3.53e+01 1u0qA 125 3.55e+01 1wqsA 173 3.55e+01 1u2fA 90 3.58e+01 1u2fA d.58.7.1 39168 1mxmA 254 3.68e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1t2jA 116 3.71e+01 1wckA 220 3.71e+01 1qmeA 702 3.79e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1yu3A 381 3.86e+01 1xzoA 174 3.86e+01 1vrmA 325 3.92e+01 1pqhA 143 3.97e+01 b.52.2.1 95017 1hgxA 183 3.97e+01 1tc1A c.61.1.1 34027 1qmyA 167 4.00e+01 1qmyA d.3.1.2 37094 2bu3A 254 4.02e+01 1tp6A 128 4.20e+01 d.17.4.12 107184 1jssA 224 4.21e+01 d.129.3.2 71844 1i8nA 126 4.27e+01 1i8nA g.10.1.2 61976 1opbA 135 4.46e+01 1hmt b.60.1.2 27216 1zt1A 277 4.53e+01 1y0yA 353 4.58e+01 1v5vA 401 4.61e+01 1qtnA 164 4.63e+01 1pauA c.17.1.1 30999 1zvhA 134 4.70e+01 1dp4A 435 4.78e+01 1dp4A c.93.1.1 35710 1eylA 186 4.90e+01 1wba b.42.4.1 25593 2a2pA 129 4.94e+01 1jbeA 128 5.10e+01 3chy c.23.1.1 62845 1fl0A 171 5.12e+01 1eujA b.40.4.4 25315 2polA 366 5.13e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 2b4hA 254 5.26e+01 1sb2A 133 5.32e+01 1kskA 234 5.40e+01 d.66.1.5,d.265.1.3 72920,90389 1idsA 207 5.56e+01 1avmA a.2.11.1,d.44.1.1 15722,38730 1z5yE 149 5.58e+01 2bwrA 401 5.64e+01 1wlgA 299 5.71e+01 1obwA 175 5.73e+01 2prd b.40.5.1 25416 1ut7A 171 5.73e+01 b.143.1.1 99906 8fabB 224 5.81e+01 1igtB b.1.1.1,b.1.1.2 19773,20883 1i40A 175 5.81e+01 b.40.5.1 66024 1wy5A 317 5.85e+01 1yc7A 124 5.90e+01 1zc3B 113 5.91e+01 1w85I 49 6.04e+01 2fs3A 282 6.05e+01 1uwvA 433 6.07e+01 b.40.4.12,c.66.1.40 100128,100129 1qw1A 121 6.07e+01 1zvyA 136 6.08e+01 1g0hA 252 6.14e+01 1dk4A e.7.1.1 60171 1wdcB 156 6.16e+01 1wdcB a.39.1.5 17302 1bjmA 216 6.24e+01 8fabA b.1.1.1,b.1.1.2 20524,21460 1lucB 324 6.27e+01 1lucA c.1.16.1 29548 1i8kB 124 6.29e+01 b.1.1.1 71131 1kk8B 139 6.29e+01 a.39.1.5 77430 2absA 383 6.30e+01 2axcA 264 6.31e+01 1y89A 238 6.33e+01 1svpA 161 6.37e+01 1svpA b.47.1.3 26384 1m4vA 204 6.38e+01 b.40.2.2,d.15.6.1 74459,74460 1eny 268 6.50e+01 1eny c.2.1.2 29910 1s68A 249 6.56e+01 d.142.2.4 98591 1mmiA 366 6.64e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 1zk5A 176 6.68e+01 1xfoA 357 6.76e+01 1aw8B 91 6.80e+01 1aw8B 1f5nA 592 6.91e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1mfgA 95 6.94e+01 b.36.1.1 79043 1v52A 133 6.94e+01 1bn7A 294 7.02e+01 1bn6A c.69.1.8 34677 2bvpA 276 7.05e+01 1y2tA 142 7.13e+01 1zmyA 142 7.22e+01 1ciy 590 7.22e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1gxuA 91 7.23e+01 d.58.10.1 76378 1dro 122 7.27e+01 1btn b.55.1.1 26954 1y96B 85 7.37e+01 1pvyA 227 7.46e+01 d.115.1.2 95195 1hyxH 224 7.56e+01 1igtB b.1.1.1,b.1.1.2 20167,21191 1snnA 227 7.58e+01 d.115.1.2 105821 2g76A 335 7.74e+01 1obdA 306 7.75e+01 d.143.1.1 86767 1tif 78 7.87e+01 1tif d.15.8.1 37836 1jguH 217 7.89e+01 b.1.1.1,b.1.1.2 66688,66689 1zmaA 118 7.98e+01 1theA 260 7.99e+01 1theB d.3.1.1 37056 1ddmA 135 8.04e+01 2nmbA b.55.1.2 26993 1dkiA 371 8.06e+01 1dkiA d.3.1.1 37090 1mbmA 198 8.06e+01 b.47.1.3 78916 1eazA 125 8.10e+01 b.55.1.1 70113 2bkdN 134 8.11e+01 1be9A 119 8.19e+01 1pdr b.36.1.1 24774 2aq8A 269 8.42e+01 1f3aA 222 8.48e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1zt7A 276 8.59e+01 1ni5A 433 8.62e+01 c.26.2.5,d.229.1.1 80533,80534 1f06A 320 8.62e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1jlyA 304 8.68e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1wcgA 464 8.69e+01 1gmyA 261 8.72e+01 d.3.1.1 76236 1x0vA 354 8.72e+01 1w4vA 119 8.77e+01 1uvzA 119 8.77e+01 1lid 131 8.86e+01 1hmt b.60.1.2 27184 1e8yA 966 8.90e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1oeyA 83 8.91e+01 d.15.2.2 92800 1odkA 235 8.97e+01 c.56.2.1 86863 1uz8B 212 8.98e+01 b.1.1.1,b.1.1.2 108168,108169 1a12A 413 9.00e+01 1a12A b.69.5.1 27663