# List of top-scoring protein chains for t04-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1aop 497 2.05e-01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1mi3A 322 2.15e-01 c.1.7.1 91274 1tltA 319 4.21e-01 c.2.1.3,d.81.1.5 107135,107136 2fp4B 395 4.98e-01 1ig3A 263 5.86e-01 1ig3A b.82.6.1,c.100.1.1 62358,62359 2ch4A 320 8.55e-01 2gxfA 142 1.05e+00 1mxgA 435 1.09e+00 b.71.1.1,c.1.8.1 85193,85194 1poxA 585 1.21e+00 1poxA c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1wkyA 464 1.63e+00 1xovA 326 2.15e+00 1wqaA 455 2.17e+00 1n4wA 504 2.69e+00 c.3.1.2,d.16.1.1 91676,91677 1mxtA 504 2.79e+00 c.3.1.2,d.16.1.1 79671,79672 1b4vA 504 3.55e+00 1b8sA c.3.1.2,d.16.1.1 30334,37865 1a9xB 379 3.66e+00 1c3oB c.8.3.1,c.23.16.1 30732,31409 1su4A 994 4.01e+00 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 1qksA 567 4.27e+00 1qksA a.3.1.2,b.70.2.1 15951,27710 1iq4A 179 4.49e+00 1iq4A d.77.1.1 62641 2gdnA 267 4.61e+00 2blnA 305 4.96e+00 1vr0A 247 5.15e+00 2bibA 547 5.71e+00 1qwoA 442 5.77e+00 c.60.1.2 104620 2c0rA 362 5.88e+00 1ooyA 481 6.51e+00 c.124.1.3,c.124.1.2 93388,93389 2cvhA 220 6.51e+00 1v5vA 401 6.70e+00 1ej5A 107 6.98e+00 1ej5A a.68.1.1 18268 2aorA 223 7.17e+00 1t4gA 322 7.19e+00 a.60.4.1,c.37.1.11 106418,106419 2b7kA 200 7.25e+00 1wkbA 810 7.26e+00 1f1xA 322 7.27e+00 d.32.1.3,d.32.1.3 83208,83209 1vprA 374 7.35e+00 1upiA 225 7.50e+00 b.82.1.1 99757 1poiA 317 7.64e+00 1poiA c.124.1.2 34153 1ex1A 605 7.70e+00 1ex1A c.1.8.7,c.23.11.1 29013,31347 1ogsA 497 7.97e+00 b.71.1.2,c.1.8.3 86997,86998 1w2wB 191 8.09e+00 1gg4A 452 8.20e+00 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1dhs 344 8.36e+00 1dhs c.31.1.1 31727 2gfhA 260 8.63e+00 2azqA 311 9.07e+00 1zoyA 622 9.22e+00 1ll7A 392 9.28e+00 c.1.8.5,d.26.3.1 78085,78086 1ihuA 589 9.69e+00 c.37.1.10,c.37.1.10 62394,62395 1gggA 226 9.87e+00 1lst c.94.1.1 35817 2f6hX 419 1.04e+01 1skoA 143 1.08e+01 d.110.7.1 105676 1p2hA 571 1.09e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1e4yA 214 1.10e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1xcbA 211 1.11e+01 a.4.5.38,c.2.1.12 109552,109553 1eu1A 780 1.11e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1f6yA 262 1.15e+01 1f6yA c.1.21.2 29673 1ef1A 294 1.15e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1tvzA 388 1.16e+01 c.95.1.2,c.95.1.2 107367,107368 2bydA 323 1.18e+01 1bo1A 416 1.19e+01 1bo1A d.143.1.2 41591 1hzoA 271 1.25e+01 e.3.1.1 71092 1souA 194 1.28e+01 c.124.1.6 105858 1jtaA 361 1.31e+01 b.80.1.1 71859 1jmxA 494 1.37e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1tag 324 1.40e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 1t5oA 351 1.41e+01 c.124.1.5 106459 1lvwA 295 1.41e+01 c.68.1.6 84723 1wfxA 186 1.42e+01 2a8lA 420 1.47e+01 1itwA 741 1.52e+01 c.77.1.2 76793 1r13A 148 1.53e+01 d.169.1.1,h.1.1.1 96782,96783 1fmtA 314 1.60e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1px5A 349 1.64e+01 a.160.1.2,d.218.1.6 95277,95278 1r0mA 375 1.65e+01 c.1.11.2,d.54.1.1 104747,104748 2exrA 524 1.65e+01 1yljA 263 1.66e+01 1x6vA 630 1.66e+01 1elvA 333 1.68e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1yueA 427 1.71e+01 1qydA 313 1.72e+01 c.2.1.2 96583 1y14B 171 1.74e+01 1d2kA 392 1.76e+01 1d2kA c.1.8.5,d.26.3.1 29008,38442 1gt91 357 1.78e+01 2biwA 490 1.79e+01 1db3A 372 1.79e+01 1db3A c.2.1.2 29813 1bsg 266 1.80e+01 1btl e.3.1.1 42729 1qwkA 317 1.85e+01 c.1.7.1 96482 1ktbA 405 1.87e+01 b.71.1.1,c.1.8.1 72960,72961 1iq6A 134 1.90e+01 d.38.1.4 76755 3cox 507 1.91e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1ekgA 127 1.91e+01 1dlxA d.82.2.1 40021 1vetA 124 1.91e+01 d.110.7.1 108553 1wr8A 231 1.93e+01 1qopB 396 1.94e+01 2tysB c.79.1.1 35270 1gteA 1025 1.96e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2avnA 260 1.97e+01 1h7wA 1025 1.98e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1ei6A 406 2.01e+01 c.76.1.4 90443 1han 297 2.03e+01 1han d.32.1.3,d.32.1.3 38506,38507 1g5gA 481 2.04e+01 f.12.1.1,h.3.2.1 65155,65156 1qxyA 252 2.10e+01 d.127.1.1 96565 1vpmA 169 2.12e+01 1zzmA 259 2.12e+01 1wruA 379 2.18e+01 1amuA 563 2.20e+01 1amuA e.23.1.1 43351 1qqyA 130 2.23e+01 3lzt d.2.1.2 36586 1x42A 232 2.24e+01 1ks8A 433 2.27e+01 a.102.1.2 77519 2gjgA 248 2.31e+01 1q7fA 286 2.33e+01 b.68.9.1 96036 1k6dA 220 2.35e+01 c.124.1.2 72082 1vhoA 346 2.37e+01 b.49.3.1,c.56.5.4 100694,100695 1xd3A 230 2.38e+01 1yf3A 259 2.38e+01 1led 243 2.40e+01 1led b.29.1.1 24039 2b30A 301 2.41e+01 1j08A 226 2.45e+01 c.47.1.2,c.47.1.2 83855,83856 1gmyA 261 2.46e+01 d.3.1.1 76236 3dni 260 2.47e+01 3dni d.151.1.1 41791 2f4nA 273 2.48e+01 2fnuA 375 2.50e+01 1lcyA 325 2.55e+01 b.36.1.4,b.47.1.1 73834,73835 1theA 260 2.55e+01 1theB d.3.1.1 37056 1xv2A 237 2.60e+01 1xrtA 467 2.64e+01 1t7lA 766 2.67e+01 1at0 145 2.70e+01 1at0 b.86.1.1 28374 1vlmA 219 2.71e+01 c.66.1.41 108836 1otkA 249 2.73e+01 a.25.1.2 93521 2c0hA 353 2.74e+01 1po5A 476 2.75e+01 a.104.1.1 94963 1extA 162 2.77e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 2fflA 756 2.79e+01 2bg1A 494 2.80e+01 1ewkA 490 2.81e+01 1ewkA c.93.1.1 35712 1hgxA 183 2.83e+01 1tc1A c.61.1.1 34027 1v7oA 165 2.83e+01 d.67.1.2 100480 1i0sA 169 2.87e+01 1i0rA b.45.1.2 61491 2bl0C 142 2.93e+01 1jssA 224 2.97e+01 d.129.3.2 71844 1umwA 237 3.02e+01 d.223.1.2,d.223.1.2 99631,99632 1xjo 284 3.07e+01 1xjo c.56.5.4 33843 1vl1A 232 3.09e+01 c.124.1.1 108707 2mprA 421 3.09e+01 2mprA f.4.3.2 43788 1xwl 580 3.13e+01 1xwl c.55.3.5,e.8.1.1 33708,43001 1o0wA 252 3.14e+01 a.149.1.1,d.50.1.1 80751,80752 1floA 422 3.15e+01 1floA a.60.9.1,d.163.1.1 18106,42166 1m2kA 249 3.16e+01 c.31.1.5 84754 1s95A 333 3.17e+01 d.159.1.3 105375 1f5nA 592 3.20e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1i0rA 169 3.20e+01 1i0rA b.45.1.2 61489 1ve4A 206 3.33e+01 1wbpA 397 3.34e+01 1o9wA 177 3.41e+01 b.2.3.5 86713 1qg3A 195 3.42e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1tuhA 156 3.44e+01 d.17.4.11 107345 2djkA 133 3.46e+01 1qmeA 702 3.46e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1fc4A 401 3.50e+01 1bs0A c.67.1.4 59760 1amp 291 3.52e+01 1amp c.56.5.4 33837 1ghpA 258 3.54e+01 1btl e.3.1.1 60520 1x72A 334 3.59e+01 d.126.1.6 109495 1g8mA 593 3.59e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1q98A 165 3.61e+01 c.47.1.10 96253 3proC 166 3.64e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1c2pA 576 3.75e+01 1quvA e.8.1.4 43117 1rfmA 344 3.78e+01 c.122.1.1 97385 1bf6A 291 3.79e+01 1pscA c.1.9.3 29065 1jdw 423 3.89e+01 1jdw d.126.1.2 41129 1l6rA 227 3.94e+01 c.108.1.10 77768 1ia6A 441 3.94e+01 a.102.1.2 76738 1ockA 412 3.95e+01 c.117.1.1 86802 1olsA 400 3.97e+01 c.36.1.11 93331 1vj0A 380 3.98e+01 b.35.1.2,c.2.1.1 100786,100787 1liiA 363 3.99e+01 c.72.1.1 73921 4ubpC 570 4.05e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1m98A 317 4.08e+01 a.175.1.1,d.17.4.6 78866,78867 1fohA 664 4.12e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 2cioA 212 4.23e+01 1j1nA 492 4.24e+01 c.94.1.1 83978 1v4pA 157 4.25e+01 1zvkA 358 4.27e+01 1r6vA 671 4.30e+01 1wyuB 474 4.30e+01 1o0xA 262 4.30e+01 d.127.1.1 80755 2basA 431 4.31e+01 2fdsA 352 4.32e+01 2a7yA 83 4.36e+01 1d3vA 323 4.36e+01 1d3vA c.42.1.1 32559 1nu5A 370 4.37e+01 c.1.11.2,d.54.1.1 92183,92184 1ti6A 875 4.40e+01 b.52.2.2,c.81.1.1 106974,106975 1xf1A 926 4.42e+01 2a6hC 1119 4.43e+01 1ve5A 311 4.45e+01 1n67A 359 4.45e+01 b.2.3.4,b.2.3.4 85354,85355 1el4A 195 4.46e+01 1ej3A a.39.1.5 59453 1su8A 636 4.46e+01 e.26.1.2 98999 1eybA 471 4.49e+01 1ey2A b.82.1.4 28115 1kmoA 774 4.50e+01 f.4.3.3 72753 1u8fO 335 4.50e+01 2ashA 381 4.52e+01 1l1lA 739 4.53e+01 c.7.1.4 73470 2b0jA 358 4.53e+01 2ceyA 306 4.53e+01 1iloA 77 4.57e+01 c.47.1.1 66205 2h1tA 188 4.63e+01 2fbyA 205 4.63e+01 1xdpA 687 4.67e+01 1mvwC 147 4.72e+01 i.15.1.1 79525 1uteA 313 4.74e+01 1uteA d.159.1.1 42078 1ru8A 232 4.77e+01 c.26.2.1 97849 1xv5A 401 4.78e+01 1ecpA 238 4.82e+01 1ecpA c.56.2.1 33775 1y1nA 291 4.85e+01 1lgpA 116 4.85e+01 b.26.1.2 73890 2absA 383 4.85e+01 2f1lA 187 4.89e+01 1efpB 252 4.93e+01 1efvB c.26.2.3 31636 1pwhA 327 4.93e+01 c.79.1.1 95224 1pjr 724 4.94e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1pp0A 199 4.98e+01 d.103.1.1 104211 1x7dA 350 5.07e+01 1gbg 214 5.08e+01 1axkA b.29.1.2 24171 1ci9A 392 5.19e+01 e.3.1.1 64767 1j31A 262 5.23e+01 d.160.1.2 90808 1ve3A 227 5.29e+01 1kbpA 432 5.30e+01 4kbpA b.1.12.1,d.159.1.1 22349,42068 1i7oA 429 5.30e+01 1i7oA d.177.1.1,d.177.1.1 61893,61894 1qh3A 260 5.35e+01 1qh5A d.157.1.2 42059 1kx5B 102 5.35e+01 a.22.1.1 77594 1y8qA 346 5.39e+01 1uasA 362 5.40e+01 b.71.1.1,c.1.8.1 88388,88389 1l1jA 239 5.43e+01 b.47.1.1 84516 1hdhA 536 5.48e+01 c.76.1.2 65805 1lz1 130 5.49e+01 3lzt d.2.1.2 36415 1uohA 226 5.49e+01 d.211.1.1 99690 1j0dA 341 5.51e+01 c.79.1.1 83902 2bnfB 241 5.54e+01 1sz7A 200 5.55e+01 1oxwA 373 5.55e+01 c.19.1.3 87539 1w5cB 510 5.56e+01 1wckA 220 5.60e+01 2aaoA 166 5.65e+01 2pvbA 107 5.66e+01 1a75A a.39.1.4 17205 6mhtA 327 5.69e+01 6mhtA c.66.1.26 34226 1qh5A 260 5.71e+01 1qh5A d.157.1.2 42057 1phk 298 5.75e+01 1cdkA d.144.1.7 41635 1a4iA 301 5.84e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1tif 78 5.84e+01 1tif d.15.8.1 37836 2ez3A 302 5.86e+01 1th0A 226 5.88e+01 d.3.1.7 106903 1lokA 291 5.89e+01 c.56.5.4 78122 1tzyD 103 5.92e+01 a.22.1.1 107533 1czfA 362 5.93e+01 1czfA b.80.1.3 28031 1avgI 142 5.94e+01 1avgI b.60.1.3 27229 2a7mA 250 5.96e+01 1q35A 320 5.97e+01 c.94.1.1 95661 1k3yA 221 6.00e+01 a.45.1.1,c.47.1.5 77245,77246 2f9sA 151 6.01e+01 2bcfA 276 6.03e+01 1y08A 323 6.06e+01 1qxoA 388 6.11e+01 d.258.1.1 96539 1omp 370 6.12e+01 4mbp c.94.1.1 35778 1k07A 263 6.12e+01 d.157.1.1 77218 1anf 370 6.13e+01 4mbp c.94.1.1 35776 1kjqA 391 6.17e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1xa3A 437 6.17e+01 1rtqA 299 6.20e+01 c.56.5.4 97819 1wycA 392 6.27e+01 4cpv 109 6.27e+01 1a75A a.39.1.4 17198 1esl 162 6.36e+01 1esl d.169.1.1,g.3.11.1 42353,44225 1h09A 338 6.40e+01 b.109.1.1,c.1.8.8 83420,83421 1t1gA 364 6.42e+01 c.41.1.2 106246 1iw7C 1119 6.43e+01 e.29.1.1 71474 2cw6A 298 6.49e+01 1ll8A 114 6.53e+01 d.110.3.5 78089 1sotA 320 6.54e+01 b.36.1.4,b.47.1.1 105852,105853 1htyA 1015 6.54e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2aaa 484 6.56e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1jsf 130 6.57e+01 3lzt d.2.1.2 36410 1suuA 312 6.58e+01 b.68.10.1 99006 2ahuA 531 6.62e+01 1ohlA 342 6.65e+01 c.1.10.3 87035 1dq3A 454 6.65e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2g30A 258 6.66e+01 1gyhA 318 6.66e+01 b.67.2.1 70757 1w85I 49 6.66e+01 1x7oA 287 6.67e+01 1snnA 227 6.77e+01 d.115.1.2 105821 1h8eA 510 6.86e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1rlmB 271 6.89e+01 1hq3D 103 6.91e+01 1aoiB a.22.1.1 16464 1jv1A 505 6.94e+01 c.68.1.5 71892 1zbsA 291 6.96e+01 1y0zA 330 6.96e+01 1wp5A 323 6.99e+01 1iv8A 720 6.99e+01 b.71.1.1,c.1.8.1 76842,76843 1wyuA 438 7.00e+01 1ra0A 430 7.05e+01 1z7wA 322 7.05e+01 1wnfA 328 7.07e+01 1kskA 234 7.09e+01 d.66.1.5,d.265.1.3 72920,90389 1o5zA 442 7.12e+01 c.59.1.2,c.72.2.2 92530,92531 1zd3A 555 7.14e+01 1vckA 115 7.21e+01 1kfwA 435 7.24e+01 c.1.8.5,d.26.3.1 77376,77377 1l8aA 886 7.26e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1va6A 518 7.30e+01 1v10A 521 7.33e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1jihA 531 7.41e+01 d.240.1.1,e.8.1.7 90374,90375 2gnpA 266 7.45e+01 1k8tA 510 7.46e+01 e.41.1.1 68316 2liv 344 7.50e+01 2liv c.93.1.1 35708 1un7A 400 7.55e+01 b.92.1.5,c.1.9.10 99657,99658 1a12A 413 7.58e+01 1a12A b.69.5.1 27663 1jm1A 204 7.58e+01 b.33.1.1 71745 1cfb 205 7.60e+01 1cfb b.1.2.1,b.1.2.1 21991,21992 1u0fA 564 7.60e+01 1j1tA 233 7.60e+01 b.29.1.18 90771 1twdA 256 7.61e+01 c.1.30.1 107397 1j8mF 297 7.63e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1nekA 588 7.63e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1el5A 389 7.63e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1tqyA 424 7.66e+01 c.95.1.1,c.95.1.1 107245,107246 1dt9A 437 7.72e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1xnzA 264 7.76e+01 1t94A 459 7.78e+01 d.240.1.1,e.8.1.7 106701,106702 1vkiA 181 7.80e+01 d.116.1.1 108664 1g6aA 271 7.80e+01 1btl e.3.1.1 42704 1y8aA 332 7.83e+01 1l5jA 865 7.84e+01 a.118.15.1,c.8.2.1,c.83.1.1 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8.73e+01 c.124.1.1 65044 2b5hA 200 8.75e+01 1zkjA 359 8.81e+01 1fgkA 310 8.82e+01 1fgkA d.144.1.7 41693 1oy3D 282 8.83e+01 d.211.1.1 87554 1oz2A 331 8.86e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2c1xA 456 8.90e+01 1qh7A 207 8.96e+01 1axkA b.29.1.11 24317