# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ru8A 232 7.28e-01 c.26.2.1 97849 1xngA 268 1.06e+00 1lvwA 295 2.17e+00 c.68.1.6 84723 2a7yA 83 2.44e+00 1theA 260 3.27e+00 1theB d.3.1.1 37056 1gmyA 261 3.65e+00 d.3.1.1 76236 1el5A 389 4.60e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1k2yX 463 4.81e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1p5dX 463 5.40e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2d13A 227 7.13e+00 1xcbA 211 7.60e+00 a.4.5.38,c.2.1.12 109552,109553 1iloA 77 1.01e+01 c.47.1.1 66205 1chmA 401 1.18e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2a9mL 110 1.31e+01 2gxfA 142 1.32e+01 1dq3A 454 1.34e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1yovA 537 1.34e+01 1wosA 364 1.47e+01 b.44.2.1,d.250.1.1 109468,109469 1vrmA 325 1.52e+01 1pk6B 132 1.55e+01 b.22.1.1 94802 1bqhG 129 1.62e+01 1cd8 b.1.1.1 19715 2f5tX 233 1.63e+01 1hgxA 183 1.63e+01 1tc1A c.61.1.1 34027 1lgpA 116 1.64e+01 b.26.1.2 73890 1jssA 224 1.67e+01 d.129.3.2 71844 1iq4A 179 1.67e+01 1iq4A d.77.1.1 62641 1wy2A 351 1.68e+01 1r26A 125 1.70e+01 c.47.1.1 96847 2azqA 311 1.71e+01 1vckA 115 1.75e+01 1u6zA 513 1.98e+01 1wckA 220 2.03e+01 1dgwA 178 2.04e+01 1dgwA b.82.1.2 28090 1k3iA 656 2.09e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1nezG 128 2.10e+01 b.1.1.1 85592 1svpA 161 2.14e+01 1svpA b.47.1.3 26384 1rsy 152 2.25e+01 1rsy b.7.1.2 23192 2cokA 113 2.28e+01 2fimA 276 2.42e+01 1rzfL 213 2.42e+01 b.1.1.1,b.1.1.2 98152,98153 1gof 639 2.42e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1v8hA 107 2.46e+01 1bn7A 294 2.46e+01 1bn6A c.69.1.8 34677 1lfo 128 2.57e+01 1hmt b.60.1.2 27223 1bymA 97 2.72e+01 1bi0 b.34.1.2 24458 1vgwA 231 2.81e+01 c.68.1.13 100612 1io1A 398 2.85e+01 1io1A e.32.1.1 62611 1cb8A 678 2.87e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1ub3A 220 2.89e+01 c.1.10.1 88395 1yezA 68 3.01e+01 1o6sB 105 3.09e+01 b.1.6.1 81096 1ee6A 197 3.37e+01 1ee6A b.80.1.1 28024 1ru4A 400 3.42e+01 b.80.1.9 97836 1fsgA 233 3.45e+01 1qk3A c.61.1.1 34029 1s68A 249 3.51e+01 d.142.2.4 98591 1tif 78 3.56e+01 1tif d.15.8.1 37836 1nslA 184 3.57e+01 d.108.1.1 86137 1u24A 337 3.63e+01 1j8mF 297 3.71e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1k3xA 262 3.78e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1f06A 320 3.84e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1sb2A 133 3.87e+01 1yu0A 381 3.96e+01 1j8yF 297 3.96e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1e8yA 966 3.97e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1ekgA 127 3.98e+01 1dlxA d.82.2.1 40021 1yu1A 381 4.03e+01 1yu4A 381 4.08e+01 1p5hA 428 4.09e+01 c.123.1.1 87802 1upiA 225 4.11e+01 b.82.1.1 99757 1tp6A 128 4.25e+01 d.17.4.12 107184 2bu3A 254 4.33e+01 1o0wA 252 4.42e+01 a.149.1.1,d.50.1.1 80751,80752 1yu3A 381 4.45e+01 1cojA 212 4.55e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2axcA 264 4.57e+01 1yu2A 381 4.58e+01 1eudB 396 4.68e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1idsA 207 4.82e+01 1avmA a.2.11.1,d.44.1.1 15722,38730 1x0vA 354 4.89e+01 1ut7A 171 4.91e+01 b.143.1.1 99906 1x99A 145 4.95e+01 1ass 159 4.96e+01 1a6dA c.8.5.2 30818 1mvfA 135 5.09e+01 b.1.1.1 85141 1qw1A 121 5.12e+01 1f7dA 136 5.12e+01 1dun b.85.4.1 28353 2djkA 133 5.14e+01 1xv2A 237 5.21e+01 1xauA 122 5.30e+01 2azwA 148 5.40e+01 2ew2A 316 5.49e+01 1vfgA 390 5.58e+01 a.173.1.1,d.218.1.4 108570,108571 1s3cA 141 5.59e+01 1j9bA 141 5.63e+01 c.47.1.12 66459 2blnA 305 5.64e+01 1wu7A 434 5.82e+01 1wqsA 173 5.84e+01 1qmeA 702 5.85e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1a6wL 109 6.21e+01 1mfa b.1.1.1 20252 1y4oA 104 6.36e+01 1bjmA 216 6.40e+01 8fabA b.1.1.1,b.1.1.2 20524,21460 1i0rA 169 6.50e+01 1i0rA b.45.1.2 61489 1i0sA 169 6.50e+01 1i0rA b.45.1.2 61491 1zmaA 118 6.81e+01 1qtnA 164 7.14e+01 1pauA c.17.1.1 30999 1gpmA 525 7.18e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1qhoA 686 7.20e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1mmiA 366 7.31e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 1gq8A 319 7.35e+01 b.80.1.5 70350 1ofdA 1520 7.47e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1nciA 110 7.57e+01 1edhA b.1.6.1 22191 1uv4A 293 7.59e+01 1tuhA 156 7.63e+01 d.17.4.11 107345 1m4vA 204 7.63e+01 b.40.2.2,d.15.6.1 74459,74460 1jbeA 128 7.69e+01 3chy c.23.1.1 62845 1qmpA 130 7.74e+01 1dz3A c.23.1.1 31106 1k24A 253 7.81e+01 f.4.4.2 72002 1eny 268 7.86e+01 1eny c.2.1.2 29910 1im3D 95 7.98e+01 1im3D b.1.18.5 62568 1dz3A 130 8.04e+01 1dz3A c.23.1.1 31105 1gycA 499 8.06e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1xfpA 142 8.09e+01 b.1.1.1 109587 1oaqL 120 8.09e+01 b.1.1.1 92708 1hmt 132 8.28e+01 1hmt b.60.1.2 27169 1f5nA 592 8.33e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1u2fA 90 8.36e+01 1u2fA d.58.7.1 39168 2cxaA 256 8.36e+01 1afb1 154 8.52e+01 1rtm1 2aq8A 269 8.56e+01 1hoe 74 8.62e+01 1hoe b.5.1.1 22833 2axwA 134 8.64e+01 1pmzA 86 8.71e+01 a.39.1.10 104195 1uacL 107 8.76e+01 b.1.1.1 99133 1d7yA 408 8.77e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1qydA 313 8.79e+01 c.2.1.2 96583 1nycA 111 8.80e+01 b.61.2.2 92336 1em2A 229 8.84e+01 1em2A d.129.3.2 41321 1qmyA 167 8.86e+01 1qmyA d.3.1.2 37094 1kk8B 139 8.93e+01 a.39.1.5 77430 1opbA 135 8.96e+01 1hmt b.60.1.2 27216