Best Alignments for T0316

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xngA/T0316-1xngA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xngA/T0316-1xngA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9377e-021.53e-01
2a2pA/T0316-2a2pA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a2pA/T0316-2a2pA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0944e+004.99e-06
1id3B/T0316-1id3B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1id3B/T0316-1id3B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7902e+001.17e-09 a.22.1.1
1gpmA/T0316-1gpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gpmA/T0316-1gpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9115e+003.51e+00 1gpmA c.23.16.1
c.26.2.1
d.52.2.1
2cokA/T0316-2cokA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cokA/T0316-2cokA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4431e+001.30e-06
1vl2A/T0316-1vl2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vl2A/T0316-1vl2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4943e+002.17e-02 c.26.2.1
d.210.1.1
1pmzA/T0316-1pmzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pmzA/T0316-1pmzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2648e+001.05e-02 a.39.1.10
1tif/T0316-1tif-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tif/T0316-1tif-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.7162e+002.04e-04 1tif d.15.8.1
1kijA/T0316-1kijA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kijA/T0316-1kijA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.0612e+007.86e-08 d.14.1.3
d.122.1.2
1p5hA/T0316-1p5hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1p5hA/T0316-1p5hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.2746e+002.82e-06 c.123.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001