# List of top-scoring protein chains for T0316.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 4.61e-01 1s1iH 191 3.02e+00 i.1.1.1 105182 1ok0A 74 3.41e+00 b.5.1.1 93191 1pmzA 86 5.85e+00 a.39.1.10 104195 2a2pA 129 6.37e+00 1mkeA 152 6.56e+00 b.55.1.4 79231 1rc9A 221 7.15e+00 1vdgA 197 7.20e+00 1ojt 482 7.28e+00 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30581,30582,40212 1bhy 482 7.30e+00 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30583,30584,40213 1po5A 476 8.34e+00 a.104.1.1 94963 1suoA 476 9.30e+00 a.104.1.1 106026 1eal 127 1.11e+01 1hmt b.60.1.2 27227 1sg0A 230 1.36e+01 1zx1A 231 1.37e+01 2bzsA 236 1.38e+01 1cqqA 180 1.41e+01 1cqqA b.47.1.4 26422 1vjgA 218 1.49e+01 c.23.10.6 100810 1cjbA 231 1.77e+01 1qk3A c.61.1.1 34079 1kn1A 160 1.79e+01 a.1.1.3 77455 1bkf 107 1.83e+01 1fkj d.26.1.1 38382 1n4kA 381 1.90e+01 a.118.22.1,b.42.6.1 79992,79993 1zczA 464 1.99e+01 1ugnA 198 2.08e+01 b.1.1.4,b.1.1.4 107828,107829 1fkj 107 2.14e+01 1fkj d.26.1.1 38384 1tcoC 107 2.16e+01 1fkj d.26.1.1 38426 1g0xA 197 2.22e+01 1nkr b.1.1.4,b.1.1.4 21805,21806 1eymA 107 2.46e+01 1fkj d.26.1.1 38403 1bl4A 107 2.56e+01 1fkj d.26.1.1 38393 1gpmA 525 2.58e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1qtfA 246 2.66e+01 1agjA b.47.1.1 25830 1dt2A 245 2.68e+01 b.47.1.1 76138 1fkl 107 2.76e+01 1fkj d.26.1.1 38423 2dg4A 107 2.93e+01 1fo0A 116 2.94e+01 1tvdA b.1.1.1 20610 1allA 160 2.96e+01 1qgwC a.1.1.3 15647 1kyhA 276 3.10e+01 c.72.1.4 73222 2dg9A 107 3.15e+01 2aj3A 213 3.19e+01 2cokA 113 3.24e+01 1vrpA 381 3.29e+01 1qk5A 233 3.31e+01 1qk3A c.61.1.1 34035 1fsgA 233 3.58e+01 1qk3A c.61.1.1 34029 1b33A 160 3.63e+01 1qgwC a.1.1.3 15649 1dbrA 231 3.63e+01 1qk3A c.61.1.1 34041 1vhqA 232 3.70e+01 c.23.16.2 100696 1hey 128 3.82e+01 3chy c.23.1.1 31061 1qr0A 228 3.90e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 6cgt 684 3.90e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21837,22506,27744,28731 5cgt 684 3.91e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21824,22493,27731,28718 4cgt 678 3.92e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21825,22494,27732,28719 8cgtA 684 3.93e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21831,22500,27738,28725 1cgt 684 3.93e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21815,22484,27722,28709 1bxdA 161 3.95e+01 1bxdA d.122.1.3 41111 1iq4A 179 4.00e+01 1iq4A d.77.1.1 62641 1oy1A 228 4.35e+01 c.23.16.2 87548 1ocsA 162 4.37e+01 d.189.1.1 92776 1m94A 93 4.44e+01 d.15.1.1 78865 1o1uA 127 4.57e+01 b.60.1.2 81076 2aw4F 178 4.61e+01 1kbaA 66 4.69e+01 3ebx g.7.1.1 44431 1mjiA 182 4.74e+01 d.77.1.1 79208 1lbvA 252 4.79e+01 e.7.1.1 73813 1souA 194 4.87e+01 c.124.1.6 105858 1ntyA 311 4.87e+01 a.87.1.1,b.55.1.1 103873,103874 1eo9A 209 4.88e+01 3pchA b.3.6.1 22731 1eoaA 209 4.91e+01 3pchA b.3.6.1 22732 1vddA 228 4.98e+01 e.49.1.1 108519 2gpyA 233 5.36e+01 2erjC 247 5.39e+01 1iruE 241 5.85e+01 d.153.1.4 71356 1gknA 128 5.98e+01 g.18.1.1,g.18.1.1 70229,70230 1mvwB 145 6.31e+01 i.15.1.1 79524 1zs8A 274 6.38e+01 1uteA 313 6.43e+01 1uteA d.159.1.1 42078 1smvA 266 6.45e+01 1smvA b.121.4.7 23288 2mysB 166 6.62e+01 1wdcB a.39.1.5 17308 1xcbA 211 6.71e+01 a.4.5.38,c.2.1.12 109552,109553 1tocR 120 6.93e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1nwvA 129 7.27e+01 g.18.1.1,g.18.1.1 86304,86305 1h4bA 84 7.31e+01 a.39.1.10 90608 1f5aA 513 7.34e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1q79A 514 7.35e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1rcuA 195 7.43e+01 c.129.1.1 97295 1hm7A 336 7.71e+01 a.128.1.4 76719 1ps1A 337 7.78e+01 1ps1A a.128.1.4 19450 1xwyA 264 7.87e+01 1dn0B 232 8.22e+01 1igtB b.1.1.1,b.1.1.2 19831,20935 1cicA 214 8.28e+01 8fabA b.1.1.1,b.1.1.2 19964,21024 1qlrB 232 8.39e+01 1igtB b.1.1.1,b.1.1.2 19835,20939 1g47A 77 8.45e+01 1g47A g.39.1.3,g.39.1.3 45147,45148 2b6hA 192 8.52e+01 1jwiB 125 8.62e+01 d.169.1.1 67384 1zbdA 203 8.65e+01 1ctqA c.37.1.8 32019 1k9uA 78 8.74e+01 a.39.1.10 84348 1lba 146 8.77e+01 1lba d.118.1.1 41062 1z45A 699 8.85e+01 1t9zA 197 8.99e+01 c.108.1.16 106728 1aroL 151 9.00e+01 1lba d.118.1.1 41063