# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a2pA 129 3.27e-01 1p5hA 428 2.49e+00 c.123.1.1 87802 1g47A 77 3.78e+00 1g47A g.39.1.3,g.39.1.3 45147,45148 1wdcB 156 6.79e+00 1wdcB a.39.1.5 17302 1xngA 268 7.16e+00 1pmzA 86 7.24e+00 a.39.1.10 104195 2ait 74 7.49e+00 1hoe b.5.1.1 22837 1kk8B 139 7.58e+00 a.39.1.5 77430 1ugnA 198 8.22e+00 b.1.1.4,b.1.1.4 107828,107829 2cokA 113 8.41e+00 3ait 74 9.11e+00 1hoe b.5.1.1 22835 1mkeA 152 1.02e+01 b.55.1.4 79231 1hoe 74 1.07e+01 1hoe b.5.1.1 22833 1scmB 145 1.12e+01 1wdcB a.39.1.5 17304 1tif 78 1.15e+01 1tif d.15.8.1 37836 1ok0A 74 1.17e+01 b.5.1.1 93191 1fkd 107 1.22e+01 1fkj d.26.1.1 38383 2a1vA 144 1.23e+01 1wj7A 104 1.25e+01 1fkj 107 1.25e+01 1fkj d.26.1.1 38384 1t4fM 110 1.29e+01 1g0xA 197 1.30e+01 1nkr b.1.1.4,b.1.1.4 21805,21806 1bkf 107 1.33e+01 1fkj d.26.1.1 38382 2f5gA 133 1.35e+01 1csbB 205 1.45e+01 1theB 1fkf 107 1.47e+01 1fkj d.26.1.1 38386 1zo0A 126 1.48e+01 1s6cA 183 1.56e+01 a.39.1.5 98594 1h2vZ 156 1.60e+01 d.58.7.1 76595 1b3sA 110 1.71e+01 1b20A d.1.1.2 36229 3mhtA 327 1.73e+01 6mhtA c.66.1.26 34234 1mszA 86 1.76e+01 d.68.7.1 79428 1vddA 228 1.90e+01 e.49.1.1 108519 1a2pA 110 1.90e+01 1b20A d.1.1.2 36140 1theB 260 1.94e+01 1theB d.3.1.1 37057 1tk4A 121 1.97e+01 a.133.1.2 107073 1eal 127 1.98e+01 1hmt b.60.1.2 27227 1theA 260 1.98e+01 1theB d.3.1.1 37056 1zljA 78 2.00e+01 1wr2A 238 2.01e+01 1po5A 476 2.01e+01 a.104.1.1 94963 1ycrA 109 2.01e+01 1ycqA a.42.1.1 17420 1brhA 110 2.05e+01 1b20A d.1.1.2 36151 1fv0A 121 2.09e+01 a.133.1.2 70147 1tj9A 121 2.12e+01 a.133.1.2 107015 2cs2A 134 2.16e+01 2g58A 121 2.19e+01 1zwpA 121 2.21e+01 1rnbA 110 2.21e+01 1b20A d.1.1.2 36196 2axiA 115 2.25e+01 1qtnA 164 2.27e+01 1pauA c.17.1.1 30999 1kbaA 66 2.36e+01 3ebx g.7.1.1 44431 1dapA 320 2.36e+01 1dapA c.2.1.3,d.81.1.3 30053,39968 1hgxA 183 2.36e+01 1tc1A c.61.1.1 34027 3dapA 320 2.47e+01 1dapA c.2.1.3,d.81.1.3 30051,39966 1banA 110 2.48e+01 1b20A d.1.1.2 36197 1fwp 139 2.50e+01 1eayC d.58.24.1 39396 1kpmA 121 2.50e+01 a.133.1.2 72844 6mhtA 327 2.52e+01 6mhtA c.66.1.26 34226 1f06A 320 2.53e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1at3A 247 2.55e+01 1at3A b.57.1.1 27021 1kskA 234 2.59e+01 d.66.1.5,d.265.1.3 72920,90389 1d06A 130 2.61e+01 1drmA d.110.3.2 40906 1g13A 162 2.63e+01 1g13A b.95.1.1 60194 1brnL 110 2.64e+01 1b20A d.1.1.2 36143 1g5cA 170 2.68e+01 1g5cA c.53.2.1 60264 1b20A 110 2.68e+01 1b20A d.1.1.2 36207 1b2zA 110 2.74e+01 1b20A d.1.1.2 36216 1kppA 145 2.82e+01 d.20.1.2 72846 1hmy 327 2.86e+01 6mhtA c.66.1.26 34229 1sqzA 121 2.91e+01 a.133.1.2 98975 1zczA 464 2.92e+01 1bngA 110 2.96e+01 1b20A d.1.1.2 36184 1pzwA 80 2.97e+01 g.39.1.10 95483 1rcd 173 3.05e+01 2fha a.25.1.1 16687 1qk3A 233 3.09e+01 1qk3A c.61.1.1 34031 1b21A 110 3.18e+01 1b20A d.1.1.2 36219 1kn1A 160 3.22e+01 a.1.1.3 77455 1ntyA 311 3.37e+01 a.87.1.1,b.55.1.1 103873,103874 1nw3A 416 3.39e+01 c.66.1.31 86288 1ew0A 130 3.47e+01 1drmA d.110.3.2 40905 1fu1B 203 3.51e+01 1fu1B b.59.1.1,h.1.11.1 27077,45631 1foeA 377 3.75e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1pu5A 164 3.76e+01 b.95.1.1 104310 1wu7A 434 3.78e+01 1mvwB 145 3.81e+01 i.15.1.1 79524 2nef 136 3.87e+01 1efnB d.102.1.1 40704 1iq4A 179 3.92e+01 1iq4A d.77.1.1 62641 1b2sA 110 3.93e+01 1b20A d.1.1.2 36213 1yyvA 131 3.94e+01 1kjs 74 3.97e+01 1kjs a.50.1.1 17792 1b33A 160 4.00e+01 1qgwC a.1.1.3 15649 1i2aA 219 4.11e+01 e.24.1.1 90660 1cjsA 219 4.20e+01 1cjsA e.24.1.1 43354 1a2aA 122 4.23e+01 1poa a.133.1.2 19540 1bnr 110 4.25e+01 1b20A d.1.1.2 36206 1oxsC 353 4.30e+01 b.40.6.3,c.37.1.12 87519,87520 1m1eB 81 4.32e+01 a.161.1.1 78400 1puc 105 4.41e+01 1puc d.97.1.1 40675 1r1hA 696 4.44e+01 d.92.1.4 104756 2f2gA 221 4.58e+01 1dmtA 696 4.60e+01 1dmtA d.92.1.4 40296 1cjbA 231 4.64e+01 1qk3A c.61.1.1 34079 1aokB 122 4.69e+01 1poa a.133.1.2 19561 1u55A 188 4.87e+01 d.278.1.1 107677 1sceA 112 4.89e+01 1puc d.97.1.1 40676 1h6kX 97 4.91e+01 d.58.7.1 60684 1oxxK 353 4.92e+01 b.40.6.3,c.37.1.12 93715,93716 1y0hA 105 5.04e+01 1b8tA 192 5.07e+01 1b8tA g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 45135,45136,45137,45138 1oy1A 228 5.16e+01 c.23.16.2 87548 1a0oD 134 5.16e+01 1eayC d.58.24.1 39391 1ik9A 213 5.23e+01 b.59.1.1,h.1.11.1 66176,66177 1a4pA 96 5.24e+01 1b4cA a.39.1.2 17176 1gmyA 261 5.30e+01 d.3.1.1 76236 1whzA 70 5.34e+01 1p9qC 256 5.36e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1jltB 122 5.39e+01 a.133.1.2 66868 2cxaA 256 5.43e+01 3lynA 136 5.46e+01 1lis a.19.1.1 16413 1p4xA 250 5.49e+01 a.4.5.28,a.4.5.28 87784,87785 1n4kA 381 5.51e+01 a.118.22.1,b.42.6.1 79992,79993 1baoA 110 5.56e+01 1b20A d.1.1.2 36187 1h6kZ 98 5.58e+01 d.58.7.1 60686 1m6yA 301 5.58e+01 a.60.13.1,c.66.1.23 78716,78717 1vhqA 232 5.64e+01 c.23.16.2 100696 1vqwA 457 5.65e+01 1go3E 187 5.66e+01 b.40.4.5,d.230.1.1 83054,83055 2fyxA 143 5.77e+01 1fjcA 96 5.79e+01 1fjcA d.58.7.1 39212 1xn8A 131 5.91e+01 1ztsA 139 6.00e+01 2sas 185 6.00e+01 2sas a.39.1.5 17258 1qsgA 265 6.01e+01 1eny c.2.1.2 29935 1fjeB 175 6.04e+01 1fj7A d.58.7.1,d.58.7.1 39210,39211 1fjxA 327 6.05e+01 6mhtA c.66.1.26 34228 1yxcA 292 6.27e+01 1ro7A 259 6.41e+01 c.130.1.1 97667 1s1qA 145 6.46e+01 d.20.1.2 98351 1vyqA 173 6.69e+01 1dhpA 292 6.71e+01 1dhpA c.1.10.1 29097 2c4bA 143 6.75e+01 1yovA 537 6.82e+01 1zpwX 90 6.84e+01 1q1vA 70 6.88e+01 a.159.4.1 104479 1jwiB 125 6.95e+01 d.169.1.1 67384 1ut7A 171 6.98e+01 b.143.1.1 99906 1jpaA 312 6.99e+01 d.144.1.7 67011 1hjrA 158 7.05e+01 1hjrA c.55.3.6 33727 1qg6A 261 7.05e+01 1eny c.2.1.2 29919 1rz4A 226 7.06e+01 a.4.5.53,a.118.1.18 105131,105132 1asu 162 7.44e+01 1cxqA c.55.3.2 33626 1q4mA 221 7.75e+01 a.132.1.3 95805 1bl3A 160 7.75e+01 1b9dA c.55.3.2 33655 2ck3H 146 7.80e+01 1qz8A 113 7.84e+01 b.140.1.1 96619 1dxjA 242 7.89e+01 1cnsA d.2.1.1 36244 1wdaA 670 8.00e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 2a6nA 292 8.16e+01 1tqnA 486 8.19e+01 a.104.1.1 107238 3rabA 169 8.19e+01 1ctqA c.37.1.8 32018 1gm6A 175 8.23e+01 b.60.1.1 70272 1txb 73 8.41e+01 1txb g.7.1.1 44455 1a6zA 275 8.48e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 1hka 158 8.51e+01 1hka d.58.30.1 39433 1xnpA 202 8.63e+01 1gof 639 8.70e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1ycqA 107 8.70e+01 1ycqA a.42.1.1 17419 2c7pA 327 8.78e+01 2bnuA 203 8.91e+01