# List of top-scoring protein chains for T0316.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 6.83e-01 1iq4A 179 2.72e+00 1iq4A d.77.1.1 62641 1ok0A 74 3.10e+00 b.5.1.1 93191 1s1iH 191 3.95e+00 i.1.1.1 105182 1vdgA 197 5.36e+00 2a2pA 129 7.70e+00 1mkeA 152 7.95e+00 b.55.1.4 79231 1pmzA 86 9.46e+00 a.39.1.10 104195 1mjiA 182 9.55e+00 d.77.1.1 79208 1eal 127 1.07e+01 1hmt b.60.1.2 27227 1zczA 464 1.26e+01 1vorG 178 1.32e+01 1ps1A 337 1.35e+01 1ps1A a.128.1.4 19450 1hm7A 336 1.35e+01 a.128.1.4 76719 1nkwD 180 1.36e+01 i.1.1.2 80589 1bkf 107 1.42e+01 1fkj d.26.1.1 38382 1vhqA 232 1.43e+01 c.23.16.2 100696 1uteA 313 1.46e+01 1uteA d.159.1.1 42078 1ugnA 198 1.57e+01 b.1.1.4,b.1.1.4 107828,107829 2aw4F 178 1.57e+01 1fkj 107 1.59e+01 1fkj d.26.1.1 38384 1tcoC 107 1.61e+01 1fkj d.26.1.1 38426 1eymA 107 1.68e+01 1fkj d.26.1.1 38403 1cjbA 231 1.68e+01 1qk3A c.61.1.1 34079 1g0xA 197 1.69e+01 1nkr b.1.1.4,b.1.1.4 21805,21806 1am2 199 1.71e+01 1am2 b.86.1.2 28381 1bl4A 107 1.71e+01 1fkj d.26.1.1 38393 1oy1A 228 1.77e+01 c.23.16.2 87548 1rc9A 221 1.77e+01 1cqqA 180 1.85e+01 1cqqA b.47.1.4 26422 1po5A 476 1.89e+01 a.104.1.1 94963 1lbvA 252 1.90e+01 e.7.1.1 73813 1fkl 107 2.00e+01 1fkj d.26.1.1 38423 1n4kA 381 2.01e+01 a.118.22.1,b.42.6.1 79992,79993 1gpmA 525 2.04e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1qk5A 233 2.06e+01 1qk3A c.61.1.1 34035 2dg4A 107 2.07e+01 1hey 128 2.08e+01 3chy c.23.1.1 31061 1suoA 476 2.15e+01 a.104.1.1 106026 1fsgA 233 2.16e+01 1qk3A c.61.1.1 34029 1dbrA 231 2.19e+01 1qk3A c.61.1.1 34041 1sg0A 230 2.20e+01 1zx1A 231 2.20e+01 2bzsA 236 2.22e+01 2dg9A 107 2.33e+01 1k3iA 656 2.66e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1t2xA 639 2.66e+01 b.1.18.2,b.18.1.1,b.69.1.1 106292,106293,106294 1gof 639 2.66e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1m94A 93 2.90e+01 d.15.1.1 78865 1uszA 149 3.07e+01 b.2.3.6 108011 1kn1A 160 3.63e+01 a.1.1.3 77455 1rxlA 156 3.74e+01 1fo0A 116 3.83e+01 1tvdA b.1.1.1 20610 1gzsB 165 4.00e+01 a.168.1.1 76425 1zo0A 126 4.13e+01 1xcbA 211 4.25e+01 a.4.5.38,c.2.1.12 109552,109553 2gpyA 233 4.33e+01 1iruE 241 4.36e+01 d.153.1.4 71356 1allA 160 4.93e+01 1qgwC a.1.1.3 15647 2b7aA 293 4.93e+01 1ojt 482 4.99e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30581,30582,40212 1bhy 482 5.00e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30583,30584,40213 1gknA 128 5.06e+01 g.18.1.1,g.18.1.1 70229,70230 1chmA 401 5.37e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1o9aA 93 5.52e+01 g.27.1.1,g.27.1.1 86686,86687 1o1uA 127 5.54e+01 b.60.1.2 81076 1yat 113 6.09e+01 1fkj d.26.1.1 38427 1tif 78 6.22e+01 1tif d.15.8.1 37836 1yx2A 365 6.33e+01 1g5cA 170 6.34e+01 1g5cA c.53.2.1 60264 2aajA 130 6.36e+01 1xwyA 264 6.43e+01 1vjgA 218 6.52e+01 c.23.10.6 100810 1mc8A 343 6.57e+01 a.60.7.1,c.120.1.2 78945,78946 1pzgA 331 6.61e+01 c.2.1.5,d.162.1.1 95425,95426 6cgt 684 6.65e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21837,22506,27744,28731 1wu9A 80 6.68e+01 2creA 71 6.83e+01 1tt5A 531 6.91e+01 c.111.1.2 107291 2a6hC 1119 7.17e+01 1txqB 86 7.30e+01 5cgt 684 7.36e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21824,22493,27731,28718 1r4mA 529 7.45e+01 c.111.1.2 96999 1b43A 340 7.55e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 8cgtA 684 7.67e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21831,22500,27738,28725 1cgt 684 7.68e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21815,22484,27722,28709 1ti8A 314 7.68e+01 4cgt 678 7.74e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21825,22494,27732,28719 2erjC 247 7.82e+01 1rrsA 369 7.88e+01 a.96.1.2,d.113.1.3 97800,97801 1yyvA 131 7.91e+01 1rrqA 369 8.03e+01 a.96.1.2,d.113.1.3 97798,97799 1dn0B 232 8.10e+01 1igtB b.1.1.1,b.1.1.2 19831,20935 1b33A 160 8.21e+01 1qgwC a.1.1.3 15649 1tocR 120 8.22e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1jwiB 125 8.27e+01 d.169.1.1 67384 1qlrB 232 8.27e+01 1igtB b.1.1.1,b.1.1.2 19835,20939 1kbaA 66 8.29e+01 3ebx g.7.1.1 44431 1o0yA 260 8.37e+01 c.1.10.1 80756 1qr0A 228 8.48e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1g13A 162 8.65e+01 1g13A b.95.1.1 60194 1yovA 537 8.68e+01 1qtnA 164 8.74e+01 1pauA c.17.1.1 30999