# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 6.83e-02 2a2pA 129 1.26e-01 1zczA 464 2.23e-01 1tif 78 2.99e-01 1tif d.15.8.1 37836 2cokA 113 3.34e-01 1iq4A 179 3.87e-01 1iq4A d.77.1.1 62641 1i2aA 219 1.17e+00 e.24.1.1 90660 1po5A 476 1.20e+00 a.104.1.1 94963 2f9lA 199 1.76e+00 1pmzA 86 2.08e+00 a.39.1.10 104195 1g5cA 170 2.20e+00 1g5cA c.53.2.1 60264 2bl0B 145 2.50e+00 1iw0A 215 2.88e+00 a.132.1.1 83720 1snnA 227 2.96e+00 d.115.1.2 105821 1vlmA 219 3.06e+00 c.66.1.41 108836 1qtnA 164 3.49e+00 1pauA c.17.1.1 30999 1ugnA 198 3.50e+00 b.1.1.4,b.1.1.4 107828,107829 1wr2A 238 3.68e+00 1m6yA 301 3.92e+00 a.60.13.1,c.66.1.23 78716,78717 1lbvA 252 3.93e+00 e.7.1.1 73813 1wzdA 215 4.05e+00 1a62 130 4.28e+00 1a62 a.140.3.1,b.40.4.5 64708,64709 1wdcC 156 4.35e+00 1wdcC a.39.1.5 17317 2g76A 335 5.12e+00 1wi6A 88 5.28e+00 1rypI 222 5.31e+00 d.153.1.4 41877 1k3iA 656 5.86e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1ok0A 74 6.17e+00 b.5.1.1 93191 1bkf 107 6.24e+00 1fkj d.26.1.1 38382 2cxaA 256 6.36e+00 1l1eA 287 6.37e+00 c.66.1.18 73454 1cxqA 162 6.92e+00 1cxqA c.55.3.2 33621 1hlvA 131 6.95e+00 a.4.1.7,a.4.1.7 65854,65855 1pvdA 537 7.01e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1aop 497 7.08e+00 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1nw3A 416 7.24e+00 c.66.1.31 86288 2a1vA 144 7.46e+00 1m45A 148 7.51e+00 a.39.1.5 78598 1qysA 106 7.69e+00 k.41.1.1 96603 1q79A 514 7.82e+00 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1gmyA 261 7.98e+00 d.3.1.1 76236 1vhqA 232 8.47e+00 c.23.16.2 100696 1qzzA 374 8.47e+00 a.4.5.29,c.66.1.12 96719,96720 2a14A 263 8.68e+00 1qwdA 177 8.70e+00 b.60.1.1 96471 2fyxA 143 8.83e+00 2fp3A 316 9.52e+00 1gpmA 525 9.57e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1hjrA 158 1.01e+01 1hjrA c.55.3.6 33727 1cqqA 180 1.01e+01 1cqqA b.47.1.4 26422 1h6kZ 98 1.06e+01 d.58.7.1 60686 2f2gA 221 1.11e+01 1tzyD 103 1.14e+01 a.22.1.1 107533 1yovA 537 1.17e+01 1qyaA 307 1.23e+01 d.21.1.2,d.21.1.2 104653,104654 1c93A 265 1.29e+01 2ebn c.1.8.5 28998 1qxoA 388 1.33e+01 d.258.1.1 96539 1n4kA 381 1.34e+01 a.118.22.1,b.42.6.1 79992,79993 1ykjA 394 1.43e+01 2pii 112 1.47e+01 2pii d.58.5.1 39071 1qsgA 265 1.47e+01 1eny c.2.1.2 29935 1ars 396 1.47e+01 1ajsA c.67.1.1 34287 1lfpA 249 1.48e+01 e.39.1.1 73885 1fsgA 233 1.49e+01 1qk3A c.61.1.1 34029 1qo3C 137 1.52e+01 1qo3C d.169.1.1 42350 1l6rA 227 1.53e+01 c.108.1.10 77768 1j8mF 297 1.53e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1k0iA 394 1.53e+01 c.3.1.2,d.16.1.2 67942,67943 1h05A 146 1.58e+01 c.23.13.1 76433 1m32A 366 1.63e+01 c.67.1.3 78508 1ta0A 197 1.68e+01 c.108.1.16 106729 1iueA 98 1.70e+01 d.15.4.1 90697 1dceB 331 1.70e+01 1dceB a.102.4.3 18872 1tafB 70 1.71e+01 1tafB a.22.1.3 16482 1el5A 389 1.79e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1e87A 118 1.79e+01 1b6e d.169.1.1 42327 2gf9A 189 1.80e+01 1b7yB 785 1.81e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1exrA 148 1.82e+01 1cll a.39.1.5 17299 1p4fA 293 1.86e+01 d.144.1.7 104063 1ek0A 170 1.90e+01 1ctqA c.37.1.8 32076 1rc9A 221 1.93e+01 1fnd 314 1.94e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1oxxK 353 1.95e+01 b.40.6.3,c.37.1.12 93715,93716 1zx1A 231 1.95e+01 1keaA 221 1.96e+01 a.96.1.2 68491 1pzgA 331 2.05e+01 c.2.1.5,d.162.1.1 95425,95426 1k9uA 78 2.06e+01 a.39.1.10 84348 2f3yA 148 2.08e+01 1at3A 247 2.11e+01 1at3A b.57.1.1 27021 1mdbA 539 2.11e+01 e.23.1.1 79008 1rylA 167 2.14e+01 d.276.1.1 105124 2f5gA 133 2.14e+01 2d13A 227 2.26e+01 1x1rA 178 2.30e+01 1dxsA 80 2.31e+01 1cokA a.60.1.2 17944 1rz4A 226 2.31e+01 a.4.5.53,a.118.1.18 105131,105132 1tocR 120 2.31e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1i58A 189 2.39e+01 1b3qA d.122.1.3 61773 1zo0A 126 2.40e+01 1ps1A 337 2.41e+01 1ps1A a.128.1.4 19450 1whzA 70 2.46e+01 1zljA 78 2.47e+01 2g6bA 180 2.48e+01 1o4sA 389 2.51e+01 c.67.1.1 86620 1l3kA 196 2.51e+01 d.58.7.1,d.58.7.1 73539,73540 1oaqL 120 2.53e+01 b.1.1.1 92708 1vddA 228 2.67e+01 e.49.1.1 108519 2axiA 115 2.68e+01 1bx1A 314 2.71e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1vj2A 126 2.73e+01 b.82.1.10 100796 1sg0A 230 2.75e+01 2aotA 292 2.87e+01 1b43A 340 2.89e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1fmtA 314 2.91e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1sur 215 2.93e+01 1sur c.26.2.2 31620 1ewkA 490 2.93e+01 1ewkA c.93.1.1 35712 1zrjA 50 2.95e+01 1sh0A 510 3.01e+01 e.8.1.4 98876 1no5A 114 3.03e+01 d.218.1.5 92014 1r3sA 367 3.09e+01 c.1.22.1 96963 1k4iA 233 3.13e+01 d.115.1.2 72056 1sqhA 312 3.15e+01 d.108.1.5 98966 1lgpA 116 3.17e+01 b.26.1.2 73890 1wr8A 231 3.23e+01 1gxuA 91 3.32e+01 d.58.10.1 76378 1ew0A 130 3.34e+01 1drmA d.110.3.2 40905 2g6tA 306 3.39e+01 2d4qA 257 3.41e+01 1zdyA 307 3.43e+01 1z3eB 73 3.45e+01 1sr4A 206 3.46e+01 b.42.2.1 105948 1kb9D 246 3.49e+01 a.3.1.3,f.23.11.1 77317,77318 1y9wA 140 3.49e+01 1gnkA 112 3.64e+01 2pii d.58.5.1 39073 1omhA 293 3.68e+01 d.89.1.5 93348 1jbeA 128 3.77e+01 3chy c.23.1.1 62845 1edt 271 3.79e+01 2ebn c.1.8.5 28993 2eifA 136 3.80e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1dz3A 130 3.82e+01 1dz3A c.23.1.1 31105 1kn1A 160 3.90e+01 a.1.1.3 77455 1jalA 363 3.94e+01 c.37.1.8,d.15.10.2 84138,84139 1nmeA 146 3.97e+01 c.17.1.1 85874 1m15A 357 4.00e+01 a.83.1.1,d.128.1.2 78368,78369 1td4A 115 4.04e+01 1v8hA 107 4.08e+01 1gzsB 165 4.08e+01 a.168.1.1 76425 1z2lA 423 4.12e+01 1xubA 298 4.13e+01 2a8jA 420 4.24e+01 1oksA 56 4.24e+01 a.8.5.1 93271 1jb9A 316 4.30e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1yspA 181 4.30e+01 1lk5A 229 4.37e+01 c.124.1.4,d.58.40.1 73960,73961 1w85I 49 4.42e+01 1vjgA 218 4.45e+01 c.23.10.6 100810 1mp1A 111 4.46e+01 a.188.1.1 91382 1x0pA 143 4.55e+01 1h97A 147 4.68e+01 1h97A a.1.1.2 60812 1sknP 92 4.81e+01 1sknP a.37.1.1 17127 2f60K 64 4.82e+01 1xv2A 237 4.86e+01 2a5jA 191 4.91e+01 1ut9A 609 4.92e+01 a.102.1.2,b.1.18.2 99912,99913 2ew2A 316 4.97e+01 1t5iA 172 5.00e+01 c.37.1.19 106450 1y81A 138 5.11e+01 1i4uA 181 5.15e+01 b.60.1.1 61732 1cjwA 166 5.29e+01 1cjwA d.108.1.1 40818 1wcwA 261 5.38e+01 2bvbA 137 5.46e+01 1wy5A 317 5.46e+01 1c7qA 445 5.51e+01 2pgi c.80.1.2 35307 1f1eA 154 5.51e+01 a.22.1.2 64927 1wy7A 207 5.53e+01 1vcoA 550 5.57e+01 c.23.16.1,c.37.1.10 108508,108509 1vyxA 60 5.58e+01 1io2A 213 5.59e+01 1ekeA c.55.3.1 62612 2aalA 131 5.61e+01 2coeA 120 5.62e+01 1i40A 175 5.67e+01 b.40.5.1 66024 1o4wA 147 5.71e+01 c.120.1.1 86629 1exqA 154 5.93e+01 1b9dA c.55.3.2 33646 1n4nA 47 5.96e+01 g.3.7.5 91620 1ut7A 171 5.96e+01 b.143.1.1 99906 3seb 238 6.04e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1kjs 74 6.05e+01 1kjs a.50.1.1 17792 1lba 146 6.18e+01 1lba d.118.1.1 41062 2fd6U 276 6.20e+01 1sdjA 310 6.27e+01 d.21.1.2,d.21.1.2 98807,98808 2fftA 84 6.38e+01 2bcmA 165 6.45e+01 1vixA 420 6.58e+01 c.56.5.4,d.58.19.1 100777,100778 1p7tA 731 6.69e+01 c.1.13.1 94319 1go3F 107 6.69e+01 a.60.8.2 65407 2bl0C 142 6.71e+01 1bn8A 420 6.80e+01 1pcl b.80.1.1 28022 1wu7A 434 6.81e+01 1dzaA 129 6.81e+01 7rsa d.5.1.1 37275 1vkmA 297 6.83e+01 c.138.1.1 108670 1vjoA 393 6.85e+01 c.67.1.3 100827 1q0gA 117 6.87e+01 a.24.22.1 104428 2djkA 133 6.93e+01 1xcbA 211 6.93e+01 a.4.5.38,c.2.1.12 109552,109553 1tuzA 118 6.95e+01 1ytaA 180 6.98e+01 1wlyA 333 7.03e+01 1uw4A 91 7.09e+01 d.58.7.4 100071 1vl5A 260 7.14e+01 c.66.1.41 108720 1wdcB 156 7.19e+01 1wdcB a.39.1.5 17302 1t0fA 276 7.26e+01 1dk0A 188 7.29e+01 1b2vA d.35.1.1 38530 2blnA 305 7.55e+01 2f7fA 494 7.71e+01 2cveA 191 7.72e+01 1ihjA 98 7.73e+01 1pdr b.36.1.1 62382 1efyA 350 7.74e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1nbcA 155 7.74e+01 1nbcA b.2.2.2 22390 1uw4B 248 7.80e+01 a.118.1.14 100072 1myn 44 7.86e+01 1gpt g.3.7.4 44172 1qnxA 209 7.96e+01 1qnxA d.111.1.1 40914 1q1vA 70 8.02e+01 a.159.4.1 104479 1mpgA 282 8.05e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1drw 273 8.07e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1p6oA 161 8.10e+01 c.97.1.2 94185 1ru4A 400 8.13e+01 b.80.1.9 97836 1vzyA 291 8.14e+01 1jggA 60 8.20e+01 2hddA a.4.1.1 62950 2cpgA 45 8.23e+01 2cpgA a.43.1.3 17455 1tp6A 128 8.31e+01 d.17.4.12 107184 1u96A 69 8.35e+01 1l2mA 118 8.36e+01 d.89.1.4 77657 1n91A 108 8.37e+01 d.206.1.1 80326 1s28A 132 8.39e+01 d.198.1.1 105223 1tw9A 206 8.47e+01 a.45.1.1,c.47.1.5 107381,107382 1a4pA 96 8.49e+01 1b4cA a.39.1.2 17176 1kw4A 89 8.50e+01 a.60.1.2 73077 1x42A 232 8.50e+01 1eexG 173 8.55e+01 1dioG a.23.2.1 16490 1v0jA 399 8.71e+01 1dq3A 454 8.73e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1xk7A 408 8.74e+01 1f06A 320 8.82e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1chkA 238 8.91e+01 1chkA d.2.1.7 36999 1kao 167 8.92e+01 1ctqA c.37.1.8 32014 1t4nA 94 8.93e+01 d.50.1.1 106424 5eau 548 8.93e+01 5eat a.102.4.1,a.128.1.3 18851,19443