# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 9.64e-02 1chmA 401 1.05e+00 1chmA c.55.2.1,d.127.1.1 33545,41142 1xcbA 211 1.11e+00 a.4.5.38,c.2.1.12 109552,109553 2a2pA 129 2.35e+00 1iloA 77 3.09e+00 c.47.1.1 66205 1zljA 78 3.30e+00 1pmzA 86 3.41e+00 a.39.1.10 104195 1wr2A 238 3.73e+00 1u24A 337 3.90e+00 2cokA 113 4.24e+00 1gpmA 525 4.59e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1hgxA 183 4.82e+00 1tc1A c.61.1.1 34027 1g0sA 209 5.74e+00 1g0sA d.113.1.1 60187 1tif 78 6.90e+00 1tif d.15.8.1 37836 1meoA 209 7.20e+00 c.65.1.1 79035 1sg0A 230 7.28e+00 2b9eA 303 7.41e+00 1iq4A 179 8.65e+00 1iq4A d.77.1.1 62641 1zo0A 126 9.10e+00 1p5dX 463 1.03e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2amlA 373 1.07e+01 1qtnA 164 1.07e+01 1pauA c.17.1.1 30999 2fp4B 395 1.09e+01 2b0jA 358 1.11e+01 1r26A 125 1.13e+01 c.47.1.1 96847 1sh0A 510 1.14e+01 e.8.1.4 98876 1gmyA 261 1.18e+01 d.3.1.1 76236 2ew2A 316 1.20e+01 1qwdA 177 1.25e+01 b.60.1.1 96471 1ub3A 220 1.28e+01 c.1.10.1 88395 1vrmA 325 1.30e+01 1v8hA 107 1.32e+01 1wosA 364 1.39e+01 b.44.2.1,d.250.1.1 109468,109469 1s3cA 141 1.39e+01 1fsgA 233 1.47e+01 1qk3A c.61.1.1 34029 1f06A 320 1.62e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1yovA 537 1.69e+01 1zczA 464 1.75e+01 1m6yA 301 1.80e+01 a.60.13.1,c.66.1.23 78716,78717 1hlvA 131 1.82e+01 a.4.1.7,a.4.1.7 65854,65855 1wy2A 351 1.82e+01 1vetA 124 1.85e+01 d.110.7.1 108553 1n4kA 381 1.90e+01 a.118.22.1,b.42.6.1 79992,79993 1k3iA 656 2.06e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1wdcC 156 2.16e+01 1wdcC a.39.1.5 17317 1sb2A 133 2.17e+01 1exrA 148 2.17e+01 1cll a.39.1.5 17299 1sglA 209 2.18e+01 d.124.1.1 105536 1n7oA 721 2.19e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2blnA 305 2.22e+01 2a6hC 1119 2.27e+01 1ok7A 366 2.41e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1o4sA 389 2.44e+01 c.67.1.1 86620 1dm5A 315 2.61e+01 1avc a.65.1.1 18186 2g5dA 422 2.66e+01 1hjrA 158 2.73e+01 1hjrA c.55.3.6 33727 1z2lA 423 2.75e+01 1ok0A 74 2.84e+01 b.5.1.1 93191 1ars 396 2.95e+01 1ajsA c.67.1.1 34287 2gtrA 261 3.05e+01 1wd5A 208 3.05e+01 1m4rA 151 3.17e+01 a.26.1.3 84799 1tp6A 128 3.18e+01 d.17.4.12 107184 1zmaA 118 3.25e+01 2f3yA 148 3.32e+01 1yx4A 132 3.34e+01 2bu3A 254 3.52e+01 1vddA 228 3.53e+01 e.49.1.1 108519 2bl0B 145 3.54e+01 2bcmA 165 3.64e+01 1wojA 214 3.67e+01 1uypA 432 3.70e+01 b.29.1.19,b.67.2.3 100176,100177 1vfgA 390 3.73e+01 a.173.1.1,d.218.1.4 108570,108571 1j58A 385 3.83e+01 b.82.1.2 71531 1widA 130 3.98e+01 1qw1A 121 4.11e+01 1j8mF 297 4.12e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1k9uA 78 4.18e+01 a.39.1.10 84348 2coeA 120 4.19e+01 1fc4A 401 4.21e+01 1bs0A c.67.1.4 59760 1kqpA 271 4.31e+01 c.26.2.1 72883 1oacA 727 4.31e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1ra0A 430 4.44e+01 2a7yA 83 4.45e+01 1zx1A 231 4.51e+01 1xauA 122 4.58e+01 2g30A 258 4.62e+01 1cl8A 276 4.82e+01 1ckqA c.52.1.1 33230 1s1qA 145 4.84e+01 d.20.1.2 98351 1wdcB 156 4.87e+01 1wdcB a.39.1.5 17302 1kk8B 139 4.89e+01 a.39.1.5 77430 1dz3A 130 4.93e+01 1dz3A c.23.1.1 31105 1eljA 381 4.97e+01 4mbp c.94.1.1 35791 1t64A 377 5.06e+01 c.42.1.2 106543 1s68A 249 5.08e+01 d.142.2.4 98591 1e42A 258 5.09e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 2fzsA 193 5.10e+01 2ctoA 93 5.13e+01 1yg6A 193 5.13e+01 1w2tA 432 5.36e+01 1knmA 130 5.41e+01 b.42.2.1 72781 1tzyD 103 5.48e+01 a.22.1.1 107533 2fftA 84 5.59e+01 1s6lA 212 5.62e+01 2axcA 264 5.62e+01 1wlyA 333 5.63e+01 1rypI 222 5.76e+01 d.153.1.4 41877 2bl0C 142 5.92e+01 1q79A 514 5.97e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1rq6A 62 6.20e+01 1o9wA 177 6.27e+01 b.2.3.5 86713 1g8mA 593 6.29e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1l8nA 679 6.29e+01 c.1.8.10,d.92.2.2 84564,84565 2d13A 227 6.34e+01 1jbeA 128 6.40e+01 3chy c.23.1.1 62845 1o6yA 299 6.49e+01 d.144.1.7 81106 1ddgA 374 6.56e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1ym0A 238 6.57e+01 2gvhA 288 6.71e+01 1xzoA 174 6.91e+01 1p1lA 102 7.02e+01 d.58.5.2 87695 1pyaB 228 7.09e+01 1pyaB 1pvdA 537 7.11e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1xl3C 92 7.15e+01 2db3A 434 7.16e+01 1d8bA 81 7.17e+01 1d8bA a.60.8.1 18094 1kn1A 160 7.23e+01 a.1.1.3 77455 1a8l 226 7.25e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1pme 380 7.33e+01 1hcl d.144.1.7 41653 2f5tX 233 7.42e+01 1vjgA 218 7.46e+01 c.23.10.6 100810 1m15A 357 7.52e+01 a.83.1.1,d.128.1.2 78368,78369 1rewC 135 7.55e+01 g.7.1.3 97336 1kyhA 276 7.57e+01 c.72.1.4 73222 1zg2A 107 7.77e+01 1gxuA 91 7.80e+01 d.58.10.1 76378 1avsA 90 7.81e+01 1cll a.39.1.5 17226 1i9zA 347 7.84e+01 1i9yA d.151.1.2 62102 1ugnA 198 7.91e+01 b.1.1.4,b.1.1.4 107828,107829 1qmyA 167 7.91e+01 1qmyA d.3.1.2 37094 1g8iA 190 7.91e+01 1rec a.39.1.5 60363 1r3sA 367 7.94e+01 c.1.22.1 96963 1lgpA 116 8.19e+01 b.26.1.2 73890 1gngX 39 8.25e+01 1iybA 208 8.40e+01 d.124.1.1 90720 1lvwA 295 8.74e+01 c.68.1.6 84723 2g76A 335 8.83e+01 1nmeA 146 8.86e+01 c.17.1.1 85874 1xrsA 516 8.89e+01 1ow1A 195 8.98e+01 b.131.1.3 93625