# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 1.10e-01 2ew2A 316 3.43e-01 1xcbA 211 6.31e-01 a.4.5.38,c.2.1.12 109552,109553 2cokA 113 1.22e+00 1k3iA 656 1.35e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1gpmA 525 1.43e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1qwdA 177 1.48e+00 b.60.1.1 96471 2a2pA 129 1.64e+00 1o4sA 389 1.79e+00 c.67.1.1 86620 1iloA 77 1.82e+00 c.47.1.1 66205 1tif 78 2.35e+00 1tif d.15.8.1 37836 1v8hA 107 2.56e+00 1u24A 337 3.35e+00 1u6zA 513 3.41e+00 1wy5A 317 3.69e+00 1zljA 78 3.73e+00 1pmzA 86 4.11e+00 a.39.1.10 104195 1xl3C 92 4.17e+00 2bu3A 254 4.40e+00 2gcuA 245 4.52e+00 1tzyD 103 4.61e+00 a.22.1.1 107533 1p5dX 463 5.04e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1wu7A 434 5.18e+00 1qtnA 164 5.24e+00 1pauA c.17.1.1 30999 1vddA 228 6.04e+00 e.49.1.1 108519 1x0pA 143 6.32e+00 1kqpA 271 6.56e+00 c.26.2.1 72883 1ra0A 430 6.70e+00 1s3cA 141 6.75e+00 1t7lA 766 6.98e+00 1sh0A 510 7.07e+00 e.8.1.4 98876 2blnA 305 7.12e+00 1r26A 125 7.15e+00 c.47.1.1 96847 1z2lA 423 7.40e+00 1g0sA 209 7.80e+00 1g0sA d.113.1.1 60187 1dyr 206 7.97e+00 1aoeA c.71.1.1 34916 1lfpA 249 8.19e+00 e.39.1.1 73885 2fp4B 395 8.78e+00 1ub3A 220 9.37e+00 c.1.10.1 88395 1zo0A 126 9.37e+00 2aotA 292 9.62e+00 1sglA 209 9.75e+00 d.124.1.1 105536 2cc0A 195 9.77e+00 1wlyA 333 9.88e+00 1widA 130 1.00e+01 1gxuA 91 1.01e+01 d.58.10.1 76378 2fueA 262 1.03e+01 1chmA 401 1.08e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1l0bA 229 1.08e+01 c.15.1.3,c.15.1.3 73391,73392 1wosA 364 1.09e+01 b.44.2.1,d.250.1.1 109468,109469 1zg2A 107 1.11e+01 1wy2A 351 1.13e+01 1vetA 124 1.17e+01 d.110.7.1 108553 1knmA 130 1.17e+01 b.42.2.1 72781 2fzsA 193 1.21e+01 1yg6A 193 1.22e+01 2g5dA 422 1.23e+01 1xzoA 174 1.25e+01 1hjrA 158 1.27e+01 1hjrA c.55.3.6 33727 1g5cA 170 1.36e+01 1g5cA c.53.2.1 60264 1gttA 429 1.37e+01 d.177.1.1,d.177.1.1 70529,70530 1hgxA 183 1.41e+01 1tc1A c.61.1.1 34027 1xewX 182 1.52e+01 1cdcA 99 1.57e+01 1cdcA b.1.1.1 19746 1po5A 476 1.57e+01 a.104.1.1 94963 1nkqA 259 1.59e+01 d.177.1.1 103862 1lfdA 87 1.61e+01 1lfdA d.15.1.5 37622 2g76A 335 1.63e+01 1vfgA 390 1.64e+01 a.173.1.1,d.218.1.4 108570,108571 1ok0A 74 1.65e+01 b.5.1.1 93191 1iyhA 198 1.65e+01 a.45.1.1,c.47.1.5 83790,83791 2axcA 264 1.67e+01 1efyA 350 1.69e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1ok7A 366 1.71e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1y1oA 203 1.75e+01 1iq4A 179 1.77e+01 1iq4A d.77.1.1 62641 1exrA 148 1.80e+01 1cll a.39.1.5 17299 1w85I 49 1.95e+01 1sb2A 133 1.95e+01 2bcmA 165 1.98e+01 1a64A 97 2.00e+01 1cdcA b.1.1.1 19750 1jl0A 334 2.05e+01 1jenA d.156.1.1 63155 1l1eA 287 2.07e+01 c.66.1.18 73454 1zud2 66 2.19e+01 1sur 215 2.21e+01 1sur c.26.2.2 31620 1qmeA 702 2.23e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1whzA 70 2.24e+01 1st9A 143 2.34e+01 c.47.1.10 98987 1xwyA 264 2.38e+01 1zczA 464 2.40e+01 1rkqA 282 2.41e+01 c.108.1.10 97621 1jbeA 128 2.42e+01 3chy c.23.1.1 62845 1wdcC 156 2.42e+01 1wdcC a.39.1.5 17317 1meoA 209 2.43e+01 c.65.1.1 79035 2cu3A 64 2.45e+01 1oxxK 353 2.46e+01 b.40.6.3,c.37.1.12 93715,93716 1w4vA 119 2.58e+01 1lvwA 295 2.60e+01 c.68.1.6 84723 1gmyA 261 2.60e+01 d.3.1.1 76236 1qsgA 265 2.60e+01 1eny c.2.1.2 29935 1xi1A 575 2.66e+01 1ycoA 279 2.75e+01 2a6cA 83 2.75e+01 2cvdA 198 2.87e+01 1x0vA 354 2.90e+01 1m6yA 301 2.90e+01 a.60.13.1,c.66.1.23 78716,78717 1vrmA 325 2.92e+01 1bb8 71 2.94e+01 2bb8 d.10.1.1 37478 1ta0A 197 2.95e+01 c.108.1.16 106729 2coeA 120 3.01e+01 1dqeA 137 3.04e+01 1dqeA a.39.2.1 17388 2g6fX 59 3.17e+01 1n4kA 381 3.20e+01 a.118.22.1,b.42.6.1 79992,79993 1jqlB 140 3.20e+01 c.37.1.20 63234 1kwgA 645 3.26e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ttwA 138 3.28e+01 d.198.1.1 107308 1qw1A 121 3.30e+01 2f9sA 151 3.31e+01 1s68A 249 3.33e+01 d.142.2.4 98591 2fftA 84 3.38e+01 2f9lA 199 3.40e+01 1rq6A 62 3.43e+01 1wr2A 238 3.44e+01 1s1qA 145 3.45e+01 d.20.1.2 98351 2b9eA 303 3.46e+01 1rhs 296 3.48e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1k8qA 377 3.49e+01 c.69.1.6 72177 1yfsA 465 3.49e+01 1u8fO 335 3.54e+01 1qo3C 137 3.58e+01 1qo3C d.169.1.1 42350 1neyA 247 3.62e+01 c.1.1.1 80449 2a4aA 281 3.62e+01 1r3sA 367 3.66e+01 c.1.22.1 96963 1eny 268 3.70e+01 1eny c.2.1.2 29910 1tjyA 316 3.71e+01 c.93.1.1 107062 2gfaA 119 3.71e+01 1n8fA 350 3.74e+01 c.1.10.4 85397 1j8mF 297 3.76e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1e87A 118 3.78e+01 1b6e d.169.1.1 42327 1vjgA 218 3.78e+01 c.23.10.6 100810 1zrjA 50 3.78e+01 2gvhA 288 3.80e+01 1rewC 135 3.80e+01 g.7.1.3 97336 1dz3A 130 3.84e+01 1dz3A c.23.1.1 31105 1wcgA 464 3.86e+01 1x1rA 178 3.87e+01 2ahrA 259 3.88e+01 1o9wA 177 3.89e+01 b.2.3.5 86713 2aq8A 269 3.94e+01 1d8bA 81 3.95e+01 1d8bA a.60.8.1 18094 1rz4A 226 4.01e+01 a.4.5.53,a.118.1.18 105131,105132 1lgpA 116 4.01e+01 b.26.1.2 73890 1ru4A 400 4.07e+01 b.80.1.9 97836 1qhoA 686 4.08e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1sk7A 198 4.08e+01 a.132.1.2 105671 1rifA 282 4.11e+01 c.37.1.23 97507 1odkA 235 4.18e+01 c.56.2.1 86863 1vquA 374 4.19e+01 1atg 231 4.21e+01 1atg c.94.1.1 35834 2cvlA 124 4.24e+01 2d13A 227 4.25e+01 1omhA 293 4.25e+01 d.89.1.5 93348 1fxoA 293 4.29e+01 1g0rA c.68.1.6 34524 1d1qA 161 4.32e+01 1dg9A c.44.1.1 32642 1z3eB 73 4.33e+01 1lucB 324 4.34e+01 1lucA c.1.16.1 29548 2gu3A 136 4.37e+01 1oeyA 83 4.41e+01 d.15.2.2 92800 1k0eA 453 4.42e+01 d.161.1.1 67938 1vj7A 393 4.50e+01 a.211.1.1,d.218.1.8 100801,100802 1kte 105 4.51e+01 1kte c.47.1.1 32771 1kk8B 139 4.52e+01 a.39.1.5 77430 1vjoA 393 4.57e+01 c.67.1.3 100827 1m4rA 151 4.57e+01 a.26.1.3 84799 2absA 383 4.57e+01 1o4wA 147 4.63e+01 c.120.1.1 86629 1m4vA 204 4.66e+01 b.40.2.2,d.15.6.1 74459,74460 1iv3A 152 4.69e+01 d.79.5.1 76828 1iybA 208 4.74e+01 d.124.1.1 90720 1h72C 296 4.83e+01 d.14.1.5,d.58.26.1 60712,60713 1wn5A 130 4.84e+01 1czfA 362 4.90e+01 1czfA b.80.1.3 28031 1xfrA 128 4.94e+01 2aaoA 166 5.01e+01 1o26A 232 5.03e+01 d.207.1.1 86566 1q8iA 783 5.04e+01 c.55.3.5,e.8.1.1 96208,96209 1fmtA 314 5.08e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1pme 380 5.09e+01 1hcl d.144.1.7 41653 1tzjA 338 5.19e+01 1bx1A 314 5.21e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 5hpgA 84 5.22e+01 5hpgA g.14.1.1 44642 1pkoA 139 5.24e+01 b.1.1.1 88147 1wmiB 67 5.29e+01 2f3nA 76 5.29e+01 1cqmA 101 5.30e+01 1ris d.58.14.1 39321 1z5yE 149 5.33e+01 1gcyA 527 5.44e+01 1jdc b.71.1.1,c.1.8.1 27788,28775 1q15A 503 5.46e+01 c.26.2.1,d.153.1.1 95538,95539 1o7iA 119 5.49e+01 b.40.4.3 86642 1fjgP 88 5.52e+01 1emwA d.27.1.1 38444 1nf9A 207 5.53e+01 c.33.1.3 85631 1nmeA 146 5.53e+01 c.17.1.1 85874 1b6rA 355 5.54e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1u55A 188 5.60e+01 d.278.1.1 107677 1yx4A 132 5.63e+01 1wdcB 156 5.63e+01 1wdcB a.39.1.5 17302 2basA 431 5.71e+01 1wd5A 208 5.71e+01 1iueA 98 5.71e+01 d.15.4.1 90697 2b7kA 200 5.73e+01 1uu1A 335 5.73e+01 c.67.1.1 99993 1p1lA 102 5.73e+01 d.58.5.2 87695 1rypI 222 5.76e+01 d.153.1.4 41877 1mbmA 198 5.78e+01 b.47.1.3 78916 1vhcA 224 5.81e+01 c.1.10.1 100661 1lj5A 379 5.83e+01 e.1.1.1 73928 1jalA 363 5.84e+01 c.37.1.8,d.15.10.2 84138,84139 1j58A 385 5.87e+01 b.82.1.2 71531 1r7mA 235 5.88e+01 2ghsA 326 5.89e+01 1dofA 403 5.93e+01 1c3cA a.127.1.1 19429 1wlsA 328 5.96e+01 1nofA 383 5.96e+01 b.71.1.2,c.1.8.3 92020,92021 1s5jA 847 6.01e+01 1ut7A 171 6.03e+01 b.143.1.1 99906 1qu9A 128 6.08e+01 1qu9A d.79.1.1 39755 1sawA 225 6.12e+01 1j8fA 323 6.12e+01 1j8fA c.31.1.5 62738 1i9zA 347 6.13e+01 1i9yA d.151.1.2 62102 2f91B 35 6.14e+01 2fyxA 143 6.15e+01 1fnd 314 6.16e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 2a7oA 112 6.17e+01 2a6hC 1119 6.19e+01 1dxsA 80 6.19e+01 1cokA a.60.1.2 17944 1d3cA 686 6.28e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1o50A 157 6.33e+01 d.37.1.1,d.37.1.1 92478,92479 2d28C 149 6.37e+01 1pyaB 228 6.37e+01 1pyaB 1uwvA 433 6.43e+01 b.40.4.12,c.66.1.40 100128,100129 2bjiA 277 6.46e+01 1gtmA 419 6.49e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1a8l 226 6.49e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1pyoA 167 6.51e+01 c.17.1.1 95370 1ssxA 198 6.51e+01 b.47.1.1 98978 1iyeA 309 6.53e+01 e.17.1.1 83786 2fuvA 549 6.55e+01 1cqqA 180 6.56e+01 1cqqA b.47.1.4 26422 1wr8A 231 6.61e+01 1yovA 537 6.65e+01 1p1mA 406 6.74e+01 b.92.1.4,c.1.9.9 87696,87697 1tafB 70 6.78e+01 1tafB a.22.1.3 16482 1r5tA 142 6.88e+01 c.97.1.1 104812 2gtrA 261 6.89e+01 1d1gA 168 6.89e+01 1d1gA c.71.1.1 34889 1qpcA 279 6.95e+01 1fgkA d.144.1.7 41685 2bcgY 206 6.98e+01 1wqsA 173 6.99e+01 1sg0A 230 7.01e+01 1yemA 179 7.14e+01 2bl0C 142 7.15e+01 1jidA 128 7.17e+01 d.201.1.1 66735 1kw4A 89 7.19e+01 a.60.1.2 73077 1xauA 122 7.20e+01 1y7yA 74 7.22e+01 1d5tA 433 7.24e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 2f3yA 148 7.31e+01 1lngA 87 7.34e+01 d.201.1.1 74045 1zxtA 76 7.41e+01 1j0dA 341 7.42e+01 c.79.1.1 83902 1o63A 219 7.43e+01 c.94.1.1 92540 1xer 103 7.44e+01 1xer d.58.1.3 38990 1rkbA 173 7.46e+01 1y97A 238 7.48e+01 1dzfA 215 7.52e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1goiA 499 7.58e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1ddgA 374 7.59e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1n3lA 372 7.64e+01 c.26.1.1 79966 1f1eA 154 7.80e+01 a.22.1.2 64927 1yvcA 70 7.86e+01 1vhyA 257 7.89e+01 b.122.1.2,c.116.1.5 100714,100715 1ars 396 7.94e+01 1ajsA c.67.1.1 34287 1hw5A 210 7.94e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1zdyA 307 7.94e+01 1wpiA 133 7.97e+01 1bw0A 416 7.97e+01 1bw0A c.67.1.1 34385 1s6lA 212 8.00e+01 1bu6O 501 8.03e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 2f5gA 133 8.07e+01 1vyiA 112 8.08e+01 1k7hA 476 8.09e+01 c.76.1.1 72101 2flsA 132 8.16e+01 1wfxA 186 8.19e+01 1mkyA 439 8.20e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1k07A 263 8.23e+01 d.157.1.1 77218 1i7hA 111 8.23e+01 d.15.4.1 71122 1k1vA 41 8.24e+01 a.37.1.1 71999 1eljA 381 8.24e+01 4mbp c.94.1.1 35791 2g6bA 180 8.25e+01 1cb8A 678 8.25e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1iow 306 8.29e+01 1iow c.30.1.2,d.142.1.1 31713,41481 2bkxA 242 8.33e+01 1v74B 87 8.34e+01 a.24.20.1 100443 1rcwA 231 8.34e+01 a.132.1.4 97299 2fd6U 276 8.38e+01 1dceB 331 8.40e+01 1dceB a.102.4.3 18872 1ul7A 102 8.42e+01 d.129.6.1 99540 1ka1A 357 8.47e+01 e.7.1.1 68369 1m32A 366 8.48e+01 c.67.1.3 78508 1x0rA 249 8.55e+01 1ud9A 245 8.56e+01 d.131.1.2,d.131.1.2 107768,107769 1zpvA 91 8.61e+01 2a7yA 83 8.63e+01 1tp6A 128 8.75e+01 d.17.4.12 107184 1pzgA 331 8.78e+01 c.2.1.5,d.162.1.1 95425,95426 1qsmA 152 8.82e+01 1qsmA d.108.1.1 40808 1v6tA 255 8.87e+01 1xtmA 175 8.90e+01 2djkA 133 8.93e+01 1jogA 146 8.93e+01 a.24.16.2 77142 1io2A 213 8.99e+01 1ekeA c.55.3.1 62612