# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 8.30e-01 1zljA 78 2.27e+00 1k2yX 463 2.44e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1gpmA 525 2.49e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1xcbA 211 2.58e+00 a.4.5.38,c.2.1.12 109552,109553 1ass 159 2.62e+00 1a6dA c.8.5.2 30818 1iloA 77 2.97e+00 c.47.1.1 66205 1p5dX 463 3.20e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2a2pA 129 3.51e+00 1nslA 184 4.65e+00 d.108.1.1 86137 1eo9A 209 6.09e+00 3pchA b.3.6.1 22731 2blnA 305 6.60e+00 1ih8A 271 6.68e+00 2nsyA c.26.2.1 62377 2cokA 113 8.09e+00 1riqA 465 8.86e+00 a.203.1.1,d.104.1.1 97516,97517 1wd5A 208 9.03e+00 1wdcC 156 1.05e+01 1wdcC a.39.1.5 17317 2ew2A 316 1.06e+01 1yfsA 465 1.06e+01 1hq3D 103 1.06e+01 1aoiB a.22.1.1 16464 1tzyD 103 1.06e+01 a.22.1.1 107533 1wosA 364 1.11e+01 b.44.2.1,d.250.1.1 109468,109469 1ub3A 220 1.26e+01 c.1.10.1 88395 1m4rA 151 1.33e+01 a.26.1.3 84799 1kx5B 102 1.46e+01 a.22.1.1 77594 2axcA 264 1.48e+01 2bu3A 254 1.48e+01 1f06A 320 1.55e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1r26A 125 1.65e+01 c.47.1.1 96847 1y7yA 74 1.67e+01 3erk 364 1.71e+01 1hcl d.144.1.7 41654 2a6hC 1119 1.72e+01 1pmzA 86 1.72e+01 a.39.1.10 104195 1qtnA 164 1.79e+01 1pauA c.17.1.1 30999 2polA 366 1.81e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1kqpA 271 1.84e+01 c.26.2.1 72883 1o4sA 389 1.87e+01 c.67.1.1 86620 1bymA 97 1.90e+01 1bi0 b.34.1.2 24458 1yezA 68 1.90e+01 1qj4A 257 1.98e+01 1qj4A c.69.1.20 34796 1wy5A 317 2.09e+01 1x0pA 143 2.15e+01 1vetA 124 2.22e+01 d.110.7.1 108553 1dgwA 178 2.26e+01 1dgwA b.82.1.2 28090 1xl3C 92 2.32e+01 1lfpA 249 2.40e+01 e.39.1.1 73885 1y9qA 192 2.47e+01 1ni5A 433 2.50e+01 c.26.2.5,d.229.1.1 80533,80534 1skoA 143 2.52e+01 d.110.7.1 105676 1sur 215 2.57e+01 1sur c.26.2.2 31620 2cu3A 64 2.57e+01 1mmiA 366 2.63e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 1tp6A 128 2.65e+01 d.17.4.12 107184 1el5A 389 2.68e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1qwdA 177 2.72e+01 b.60.1.1 96471 1sglA 209 2.81e+01 d.124.1.1 105536 1xzoA 174 2.99e+01 1wcgA 464 3.00e+01 1vddA 228 3.05e+01 e.49.1.1 108519 1hgxA 183 3.12e+01 1tc1A c.61.1.1 34027 1vrmA 325 3.12e+01 1q15A 503 3.18e+01 c.26.2.1,d.153.1.1 95538,95539 2coeA 120 3.38e+01 2bcmA 165 3.39e+01 1cb8A 678 3.42e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1dyr 206 3.64e+01 1aoeA c.71.1.1 34916 1ru8A 232 3.70e+01 c.26.2.1 97849 1tvoA 368 3.70e+01 1st9A 143 3.72e+01 c.47.1.10 98987 1tif 78 3.73e+01 1tif d.15.8.1 37836 1wdcB 156 3.76e+01 1wdcB a.39.1.5 17302 1o9wA 177 3.76e+01 b.2.3.5 86713 2f9sA 151 3.76e+01 1ebdC 41 3.95e+01 1ebdC a.9.1.1 16355 1zk5A 176 4.00e+01 2bwrA 401 4.09e+01 1yx4A 132 4.14e+01 1cqqA 180 4.18e+01 1cqqA b.47.1.4 26422 1pme 380 4.26e+01 1hcl d.144.1.7 41653 1zud2 66 4.28e+01 1mr4A 47 4.32e+01 g.3.7.5 91429 1zczA 464 4.32e+01 1gmlA 178 4.32e+01 c.8.5.2 70273 1meoA 209 4.38e+01 c.65.1.1 79035 1eonA 245 4.39e+01 1rvaA c.52.1.2 33238 2amlA 373 4.41e+01 1g5cA 170 4.59e+01 1g5cA c.53.2.1 60264 1eljA 381 4.66e+01 4mbp c.94.1.1 35791 1o26A 232 4.67e+01 d.207.1.1 86566 1ciy 590 4.71e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1whzA 70 4.92e+01 1d8bA 81 4.98e+01 1d8bA a.60.8.1 18094 1o6yA 299 5.05e+01 d.144.1.7 81106 1z5yE 149 5.14e+01 3eipA 84 5.14e+01 3eipA d.26.2.1 38434 1m6yA 301 5.18e+01 a.60.13.1,c.66.1.23 78716,78717 1ok7A 366 5.26e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1wy2A 351 5.41e+01 1yasA 257 5.48e+01 1qj4A c.69.1.20 34801 1chmA 401 5.50e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1y97A 238 5.60e+01 2b43A 526 5.65e+01 7atjA 308 5.68e+01 1bgp a.93.1.1 18673 1d7yA 408 5.73e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1sx5A 244 5.75e+01 c.52.1.2 99023 1jmmA 377 5.81e+01 b.30.6.1 71749 1sh0A 510 5.89e+01 e.8.1.4 98876 1u6zA 513 5.92e+01 2d13A 227 5.97e+01 1ta0A 197 6.13e+01 c.108.1.16 106729 1t5jA 313 6.32e+01 a.209.1.1 99125 2djkA 133 6.45e+01 2a7yA 83 6.53e+01 2absA 383 6.56e+01 2g76A 335 6.56e+01 1kskA 234 6.65e+01 d.66.1.5,d.265.1.3 72920,90389 1z2lA 423 6.67e+01 1wn5A 130 6.79e+01 1f9yA 158 6.83e+01 d.58.30.1 83249 1k3iA 656 6.86e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1eqoA 158 6.90e+01 1hka 1zg2A 107 6.93e+01 1l1eA 287 6.99e+01 c.66.1.18 73454 2aotA 292 7.11e+01 1un3A 123 7.30e+01 d.5.1.1 99646 1a8l 226 7.47e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 2a9mL 110 7.50e+01 1oxsC 353 7.51e+01 b.40.6.3,c.37.1.12 87519,87520 1yruB 74 7.52e+01 1s3cA 141 7.68e+01 1i7qA 519 7.72e+01 1qdlA d.161.1.1 61901 1j08A 226 7.75e+01 c.47.1.2,c.47.1.2 83855,83856 1gof 639 7.76e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1kk8B 139 7.81e+01 a.39.1.5 77430 1n4kA 381 7.84e+01 a.118.22.1,b.42.6.1 79992,79993 1v5vA 401 7.93e+01 1jqeA 292 7.99e+01 c.66.1.19 71789 1pk6A 133 7.99e+01 b.22.1.1 94801 1wlgA 299 8.02e+01 1w85I 49 8.04e+01 1a7s 221 8.06e+01 1a7s b.47.1.2 26284 1wnfA 328 8.07e+01 1yw5A 177 8.09e+01 1xrsA 516 8.19e+01 8fabA 212 8.23e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 1lgpA 116 8.27e+01 b.26.1.2 73890 1exrA 148 8.34e+01 1cll a.39.1.5 17299 1y2tA 142 8.56e+01 1m5yA 408 8.59e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 2c46A 241 8.60e+01 1a6jA 163 8.62e+01 1a6jA d.112.1.1 40915 1x0vA 354 8.63e+01 1nf8A 207 8.70e+01 c.33.1.3 85630 1ycoA 279 8.71e+01 1i9zA 347 8.71e+01 1i9yA d.151.1.2 62102 1hlvA 131 8.71e+01 a.4.1.7,a.4.1.7 65854,65855 1fx3A 169 8.75e+01 1fx3B d.33.1.1 38524 1pk6B 132 8.78e+01 b.22.1.1 94802 1wlsA 328 8.80e+01 1k1vA 41 8.95e+01 a.37.1.1 71999 2fkiA 126 8.98e+01