# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 2.40e-01 1xcbA 211 2.06e+00 a.4.5.38,c.2.1.12 109552,109553 1chmA 401 2.45e+00 1chmA c.55.2.1,d.127.1.1 33545,41142 1zljA 78 5.11e+00 1iloA 77 5.70e+00 c.47.1.1 66205 2a2pA 129 5.89e+00 1vgwA 231 5.98e+00 c.68.1.13 100612 1k2yX 463 6.17e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1p5dX 463 6.90e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1hgxA 183 7.71e+00 1tc1A c.61.1.1 34027 1gpmA 525 8.33e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1g0sA 209 8.91e+00 1g0sA d.113.1.1 60187 1pmzA 86 9.03e+00 a.39.1.10 104195 2cokA 113 9.15e+00 1f06A 320 1.04e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1u24A 337 1.05e+01 1wr2A 238 1.05e+01 1ass 159 1.15e+01 1a6dA c.8.5.2 30818 1sg0A 230 1.24e+01 1sh0A 510 1.36e+01 e.8.1.4 98876 1jmmA 377 1.45e+01 b.30.6.1 71749 1nslA 184 1.53e+01 d.108.1.1 86137 1meoA 209 1.53e+01 c.65.1.1 79035 2b43A 526 1.54e+01 1tif 78 1.60e+01 1tif d.15.8.1 37836 2b9eA 303 1.63e+01 1gmyA 261 1.63e+01 d.3.1.1 76236 1qwdA 177 1.65e+01 b.60.1.1 96471 1iq4A 179 1.66e+01 1iq4A d.77.1.1 62641 1vrmA 325 1.81e+01 1theA 260 1.84e+01 1theB d.3.1.1 37056 1p5hA 428 2.01e+01 c.123.1.1 87802 1ub3A 220 2.01e+01 c.1.10.1 88395 1zo0A 126 2.11e+01 2ew2A 316 2.12e+01 1r26A 125 2.14e+01 c.47.1.1 96847 1qtnA 164 2.19e+01 1pauA c.17.1.1 30999 2amlA 373 2.20e+01 2b0jA 358 2.22e+01 1ru8A 232 2.25e+01 c.26.2.1 97849 2fp4B 395 2.28e+01 1eudB 396 2.30e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1d7yA 408 2.33e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1s3cA 141 2.49e+01 1mmiA 366 2.53e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 2a7yA 83 2.57e+01 1j9bA 141 2.62e+01 c.47.1.12 66459 1wy2A 351 2.62e+01 1cjbA 231 2.75e+01 1qk3A c.61.1.1 34079 2blnA 305 2.82e+01 1fsgA 233 2.82e+01 1qk3A c.61.1.1 34029 1hlvA 131 2.87e+01 a.4.1.7,a.4.1.7 65854,65855 1g4yR 148 2.87e+01 1cll a.39.1.5 60252 1sglA 209 2.90e+01 d.124.1.1 105536 1vetA 124 2.93e+01 d.110.7.1 108553 1yruB 74 2.96e+01 2bu3A 254 3.02e+01 1skoA 143 3.22e+01 d.110.7.1 105676 1m6yA 301 3.29e+01 a.60.13.1,c.66.1.23 78716,78717 1yovA 537 3.34e+01 1tp6A 128 3.49e+01 d.17.4.12 107184 1wosA 364 3.56e+01 b.44.2.1,d.250.1.1 109468,109469 1wdcC 156 3.67e+01 1wdcC a.39.1.5 17317 2polA 366 3.73e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1n4kA 381 3.74e+01 a.118.22.1,b.42.6.1 79992,79993 2axcA 264 3.81e+01 1exrA 148 3.82e+01 1cll a.39.1.5 17299 1mr4A 47 3.83e+01 g.3.7.5 91429 1yezA 68 3.92e+01 1dm5A 315 3.93e+01 1avc a.65.1.1 18186 1xauA 122 3.94e+01 1wd5A 208 3.99e+01 1v8hA 107 4.07e+01 1qisA 396 4.10e+01 1ajsA c.67.1.1 34284 1o9wA 177 4.17e+01 b.2.3.5 86713 1iw7C 1119 4.17e+01 e.29.1.1 71474 1z2lA 423 4.19e+01 1ahxA 396 4.23e+01 1ajsA c.67.1.1 34293 1bymA 97 4.47e+01 1bi0 b.34.1.2 24458 1zczA 464 4.49e+01 1oacA 727 4.58e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1o4sA 389 4.58e+01 c.67.1.1 86620 1rwsA 77 4.59e+01 d.15.3.2 97991 2a6hC 1119 4.60e+01 1ok7A 366 4.61e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1hoe 74 4.63e+01 1hoe b.5.1.1 22833 1vfgA 390 4.69e+01 a.173.1.1,d.218.1.4 108570,108571 1hjrA 158 4.81e+01 1hjrA c.55.3.6 33727 1m4rA 151 5.01e+01 a.26.1.3 84799 1gof 639 5.03e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1yx4A 132 5.28e+01 1k3iA 656 5.32e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2g5dA 422 5.34e+01 3erk 364 5.46e+01 1hcl d.144.1.7 41654 1ars 396 5.50e+01 1ajsA c.67.1.1 34287 1wojA 214 5.53e+01 1y3nA 490 5.58e+01 2gtrA 261 5.89e+01 1ok0A 74 5.96e+01 b.5.1.1 93191 1j8mF 297 5.97e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1zmaA 118 6.05e+01 2f3yA 148 6.05e+01 1sb2A 133 6.06e+01 1j8yF 297 6.17e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 2coeA 120 6.17e+01 1j58A 385 6.23e+01 b.82.1.2 71531 1vddA 228 6.25e+01 e.49.1.1 108519 2g30A 258 6.52e+01 1kk8B 139 6.65e+01 a.39.1.5 77430 1ra0A 430 6.68e+01 1qw1A 121 6.71e+01 1cqqA 180 6.77e+01 1cqqA b.47.1.4 26422 2fzsA 193 6.81e+01 1wdcB 156 6.84e+01 1wdcB a.39.1.5 17302 1kqpA 271 6.85e+01 c.26.2.1 72883 1yg6A 193 6.88e+01 1ih8A 271 6.89e+01 2nsyA c.26.2.1 62377 2ctoA 93 7.02e+01 1k6wA 426 7.08e+01 b.92.1.2,c.1.9.5 68236,68237 1fc4A 401 7.08e+01 1bs0A c.67.1.4 59760 1e42A 258 7.10e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 1jenA 267 7.13e+01 1jenA 2bzsA 236 7.19e+01 2bl0B 145 7.21e+01 2fftA 84 7.28e+01 1s1qA 145 7.39e+01 d.20.1.2 98351 2bcmA 165 7.40e+01 1tvoA 368 7.44e+01 1rznA 205 7.49e+01 1qmpA 130 7.70e+01 1dz3A c.23.1.1 31106 1xfxO 149 7.70e+01 2db3A 434 7.75e+01 1g8mA 593 7.80e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1ddgA 374 7.82e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1t64A 377 7.90e+01 c.42.1.2 106543 1eljA 381 7.94e+01 4mbp c.94.1.1 35791 1p9qC 256 7.98e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1dz3A 130 7.98e+01 1dz3A c.23.1.1 31105 1q79A 514 8.19e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1f5aA 513 8.19e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1qydA 313 8.49e+01 c.2.1.2 96583 1knmA 130 8.54e+01 b.42.2.1 72781 1zx1A 231 8.55e+01 1cl8A 276 8.65e+01 1ckqA c.52.1.1 33230 1kyhA 276 8.82e+01 c.72.1.4 73222 1widA 130 8.88e+01 1s6lA 212 8.95e+01