# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a2pA 129 3.03e-01 1mkeA 152 1.77e+00 b.55.1.4 79231 1ugnA 198 2.04e+00 b.1.1.4,b.1.1.4 107828,107829 1iq4A 179 2.09e+00 1iq4A d.77.1.1 62641 1g0xA 197 3.06e+00 1nkr b.1.1.4,b.1.1.4 21805,21806 1mszA 86 3.84e+00 d.68.7.1 79428 1g13A 162 5.29e+00 1g13A b.95.1.1 60194 1ok0A 74 6.70e+00 b.5.1.1 93191 1pu5A 164 6.74e+00 b.95.1.1 104310 1tif 78 7.13e+00 1tif d.15.8.1 37836 1hoe 74 7.33e+00 1hoe b.5.1.1 22833 1p5hA 428 8.18e+00 c.123.1.1 87802 1zo0A 126 9.36e+00 1qtnA 164 1.01e+01 1pauA c.17.1.1 30999 1cjbA 231 1.03e+01 1qk3A c.61.1.1 34079 1kskA 234 1.14e+01 d.66.1.5,d.265.1.3 72920,90389 1pmzA 86 1.17e+01 a.39.1.10 104195 1zljA 78 1.25e+01 1bkf 107 1.26e+01 1fkj d.26.1.1 38382 1theA 260 1.39e+01 1theB d.3.1.1 37056 1wr2A 238 1.50e+01 1g5cA 170 1.50e+01 1g5cA c.53.2.1 60264 1k3iA 656 1.56e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1xngA 268 1.57e+01 1gof 639 1.57e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 2ag9A 164 1.60e+01 1m6yA 301 1.66e+01 a.60.13.1,c.66.1.23 78716,78717 2cxaA 256 1.67e+01 1ew0A 130 1.79e+01 1drmA d.110.3.2 40905 1p4xA 250 1.85e+01 a.4.5.28,a.4.5.28 87784,87785 2f5gA 133 1.89e+01 1foeA 377 1.92e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1yyvA 131 1.99e+01 6mhtA 327 2.17e+01 6mhtA c.66.1.26 34226 1obwA 175 2.17e+01 2prd b.40.5.1 25416 5eau 548 2.37e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1hlvA 131 2.39e+01 a.4.1.7,a.4.1.7 65854,65855 1i40A 175 2.48e+01 b.40.5.1 66024 2a1vA 144 2.50e+01 1fnd 314 2.60e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1yxcA 292 2.66e+01 1yovA 537 2.73e+01 2f2gA 221 2.75e+01 2ag4A 164 2.78e+01 1yqbA 100 2.84e+01 1fnc 314 2.88e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1xj4A 119 2.92e+01 1lswA 131 2.96e+01 d.110.3.2 78181 1xtaA 221 3.04e+01 1k9uA 78 3.11e+01 a.39.1.10 84348 1rypI 222 3.13e+01 d.153.1.4 41877 1at3A 247 3.14e+01 1at3A b.57.1.1 27021 1luzA 88 3.21e+01 b.40.4.5 74271 1dhpA 292 3.24e+01 1dhpA c.1.10.1 29097 1go3E 187 3.30e+01 b.40.4.5,d.230.1.1 83054,83055 1gzsB 165 3.32e+01 a.168.1.1 76425 1keaA 221 3.47e+01 a.96.1.2 68491 1whzA 70 3.48e+01 1wu7A 434 3.60e+01 1gmyA 261 3.61e+01 d.3.1.1 76236 2a6nA 292 3.69e+01 1hjrA 158 3.70e+01 1hjrA c.55.3.6 33727 1dz3A 130 3.72e+01 1dz3A c.23.1.1 31105 1qsgA 265 3.80e+01 1eny c.2.1.2 29935 1ykjA 394 3.91e+01 1vhqA 232 3.98e+01 c.23.16.2 100696 1ro7A 259 4.03e+01 c.130.1.1 97667 1kjs 74 4.12e+01 1kjs a.50.1.1 17792 1hgxA 183 4.15e+01 1tc1A c.61.1.1 34027 1po5A 476 4.17e+01 a.104.1.1 94963 1bx1A 314 4.26e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1k0iA 394 4.44e+01 c.3.1.2,d.16.1.2 67942,67943 1i58A 189 4.46e+01 1b3qA d.122.1.3 61773 2a6lA 292 4.53e+01 1nw3A 416 4.56e+01 c.66.1.31 86288 1n4kA 381 4.66e+01 a.118.22.1,b.42.6.1 79992,79993 1a4pA 96 4.66e+01 1b4cA a.39.1.2 17176 1vddA 228 4.70e+01 e.49.1.1 108519 1t5iA 172 4.79e+01 c.37.1.19 106450 1q4mA 221 4.81e+01 a.132.1.3 95805 1pzwA 80 4.82e+01 g.39.1.10 95483 1p30A 952 4.84e+01 b.121.2.2,b.121.2.2 93964,93965 1a6wL 109 4.89e+01 1mfa b.1.1.1 20252 1cxqA 162 5.00e+01 1cxqA c.55.3.2 33621 2sas 185 5.05e+01 2sas a.39.1.5 17258 2a8jA 420 5.07e+01 1gxuA 91 5.24e+01 d.58.10.1 76378 1k5jA 124 5.24e+01 b.121.3.1 68201 2bibA 547 5.30e+01 1tuzA 118 5.30e+01 1vsd 152 5.41e+01 1cxqA c.55.3.2 33625 2affA 120 5.42e+01 2a9mL 110 5.42e+01 2bl0B 145 5.44e+01 1pbe 394 5.49e+01 1pbe c.3.1.2,d.16.1.2 30338,37869 1fsgA 233 5.57e+01 1qk3A c.61.1.1 34029 1mvwB 145 5.66e+01 i.15.1.1 79524 1wdcB 156 5.74e+01 1wdcB a.39.1.5 17302 1i2aA 219 5.82e+01 e.24.1.1 90660 1qysA 106 5.85e+01 k.41.1.1 96603 1m07A 111 5.90e+01 d.5.1.1 78328 1k8kF 168 5.98e+01 d.198.2.1 68312 2fyxA 143 6.29e+01 1f06A 320 6.37e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1zczA 464 6.51e+01 1rwjA 82 6.52e+01 a.138.1.1 105114 1u55A 188 6.57e+01 d.278.1.1 107677 1axn 323 6.60e+01 1avc a.65.1.1 18149 2bl0C 142 6.71e+01 1oaqL 120 6.71e+01 b.1.1.1 92708 1p6oA 161 6.77e+01 c.97.1.2 94185 2a8mA 420 6.98e+01 1mkmA 249 6.99e+01 a.4.5.33,d.110.2.2 79242,79243 2bvbA 137 7.00e+01 3rabA 169 7.00e+01 1ctqA c.37.1.8 32018 1ywqA 200 7.02e+01 2ch4A 320 7.05e+01 2cq8A 110 7.10e+01 1ckv 141 7.12e+01 1ckv d.137.1.1 41452 1s6cA 183 7.22e+01 a.39.1.5 98594 1wj7A 104 7.26e+01 1cqqA 180 7.27e+01 1cqqA b.47.1.4 26422 1a8vA 121 7.44e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 2c7pA 327 7.45e+01 1rc9A 221 7.48e+01 1vr5A 547 7.58e+01 1fdr 248 7.61e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1q1vA 70 7.67e+01 a.159.4.1 104479 1h6kZ 98 7.78e+01 d.58.7.1 60686 1a62 130 7.86e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1s6lA 212 7.88e+01 1a2pA 110 7.95e+01 1b20A d.1.1.2 36140 1ezvD 245 8.01e+01 1be3D a.3.1.3,f.23.11.1 59546,59547 2amxA 376 8.09e+01 1ruxA 951 8.13e+01 1dhx 1jqeA 292 8.22e+01 c.66.1.19 71789 1fgkA 310 8.24e+01 1fgkA d.144.1.7 41693 1tfe 145 8.49e+01 1tfe d.43.1.1 38680 1vqwA 457 8.61e+01 1kk8B 139 8.77e+01 a.39.1.5 77430 5cytR 104 8.80e+01 1ycc a.3.1.1 15878 1tk4A 121 8.85e+01 a.133.1.2 107073 1bl3A 160 8.90e+01 1b9dA c.55.3.2 33655 1vejA 74 8.93e+01 1jpaA 312 8.98e+01 d.144.1.7 67011