# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2eA 397 2.01e-01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1wh0A 134 3.99e-01 1v6fA 151 5.36e-01 d.109.1.2 108395 1jjeA 222 5.45e-01 1a7tA d.157.1.1 63117 1dd6A 228 5.81e-01 1a7tA d.157.1.1 42054 1m2xA 223 6.29e-01 d.157.1.1 84764 1ao5A 237 6.50e-01 5ptp b.47.1.2 26334 2fhxA 246 7.38e-01 1jjtA 228 8.62e-01 1a7tA d.157.1.1 63139 1x8hA 228 8.83e-01 1yhfA 115 1.10e+00 1zn8A 180 1.50e+00 1xhbA 472 1.56e+00 2ait 74 1.95e+00 1hoe b.5.1.1 22837 1mwrA 646 2.25e+00 d.17.4.5,d.175.1.1,e.3.1.1 79586,79587,79588 1hoe 74 2.31e+00 1hoe b.5.1.1 22833 3ait 74 2.34e+00 1hoe b.5.1.1 22835 1s0uA 408 3.28e+00 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1j3mA 129 4.02e+00 d.129.7.1 103836 1efcA 393 4.05e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1ok0A 74 4.29e+00 b.5.1.1 93191 1exmA 405 4.35e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2gvaA 87 4.61e+00 1gvp b.40.4.7 25389 3tss 194 4.95e+00 1aw7A b.40.2.2,d.15.6.1 25160,37749 1q2yA 140 5.44e+00 d.108.1.1 95655 1azzA 226 5.51e+00 5ptp b.47.1.2 26072 1ooeA 236 5.62e+00 c.2.1.2 87196 1eft 405 5.67e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1aw7A 194 5.83e+00 1aw7A b.40.2.2,d.15.6.1 25164,37753 2c78A 405 6.15e+00 1ddmA 135 6.58e+00 2nmbA b.55.1.2 26993 1y7rA 133 6.71e+00 1e8oA 85 7.11e+00 1914 d.49.1.1 38773 2fuqA 747 7.33e+00 1zmaA 118 7.40e+00 2gn5 87 7.44e+00 1gvp b.40.4.7 25386 1ha3A 405 7.52e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1vqb 87 7.57e+00 1gvp b.40.4.7 25370 1gvp 87 7.75e+00 1gvp b.40.4.7 25369 1kk1A 410 8.29e+00 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1914 232 8.67e+00 1914 d.49.1.1,d.49.1.1 83028,83029 1tu7A 208 9.25e+00 2crvA 120 9.72e+00 1vqqA 646 1.08e+01 1a6vL 110 1.08e+01 1mfa b.1.1.1 20256 1ae3 86 1.17e+01 1gvp b.40.4.7 25381 1ts3A 194 1.21e+01 1aw7A b.40.2.2,d.15.6.1 25168,37757 1ae2 87 1.22e+01 1gvp b.40.4.7 25382 1a6wL 109 1.27e+01 1mfa b.1.1.1 20252 1a6uL 108 1.33e+01 1mfa b.1.1.1 20254 1qsvA 101 1.35e+01 1fltX b.1.1.4 21771 1mwsA 646 1.41e+01 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 1oaqL 120 1.42e+01 b.1.1.1 92708 1jmtA 104 1.48e+01 d.58.7.3 63180 1v70A 105 1.49e+01 1cqa 133 1.55e+01 3nul d.110.1.1 40890 1v5rA 97 1.57e+01 1ve6A 582 1.84e+01 1tiu 98 1.85e+01 1tit b.1.1.4 21715 2a6tA 271 1.88e+01 1pqsA 77 1.88e+01 d.15.2.2 88277 1vkyA 347 1.97e+01 e.53.1.1 108696 1qcsA 211 2.14e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1dyoA 160 2.30e+01 1dyoA b.18.1.7 23771 2nmbA 160 2.31e+01 2nmbA b.55.1.2 26994 1x8gA 227 2.33e+01 1h6yA 170 2.41e+01 b.18.1.7 70904 1cof 143 2.51e+01 1cof d.109.1.2 40860 1cfyA 143 2.67e+01 1cof d.109.1.2 40858 1ffkF 157 2.69e+01 1ffkF d.41.4.1 38628 1qs0A 407 2.69e+01 1qs0A c.36.1.11 31829 1ukgA 252 2.69e+01 b.29.1.1 99489 1dkrA 317 2.72e+01 1dkuA c.61.1.2,c.61.1.2 34114,34115 1p57B 255 2.79e+01 b.47.1.2 94126 1uldA 150 2.84e+01 b.29.1.3 99545 1jbuH 254 2.87e+01 5ptp b.47.1.2 62856 1fltX 95 2.93e+01 1fltX b.1.1.4 21765 1danH 254 3.01e+01 5ptp b.47.1.2 26292 1fltY 95 3.02e+01 1fltX b.1.1.4 21766 1qtyT 101 3.05e+01 1fltX b.1.1.4 21769 1r6vA 671 3.08e+01 1efuA 385 3.09e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1lo6A 223 3.16e+01 b.47.1.2 74143 1n3oA 252 3.19e+01 b.29.1.1 79967 1plc 99 3.28e+01 1plc b.6.1.1 22846 1g2fC 90 3.28e+01 k.12.1.1 60222 1yxmA 303 3.37e+01 2aw2A 120 3.38e+01 1mh0A 287 3.47e+01 b.47.1.2 79110 1p9bA 442 3.47e+01 c.37.1.10 94385 1xn5A 146 3.51e+01 1kliH 254 3.52e+01 b.47.1.2 77435 1z8gA 372 3.68e+01 2alaA 391 3.70e+01 2bz6H 254 3.71e+01 1u3oA 82 3.84e+01 1vk3A 615 3.93e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1c7gA 456 3.93e+01 c.67.1.2 90415 1tplA 426 3.95e+01 1ax4A c.67.1.2 34387 1tit 98 4.07e+01 1tit b.1.1.4 21716 1ibsA 317 4.25e+01 c.61.1.2,c.61.1.2 66107,66108 1vjqA 79 4.28e+01 k.43.1.1 100830 1r7lA 110 4.48e+01 d.277.1.1 104837 1aipE 405 4.53e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25699,25739,32134 1gv9A 260 4.72e+01 b.29.1.13 70596 1fecA 490 4.74e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1m3uA 264 4.95e+01 c.1.12.8 84784 3hhrB 203 5.12e+01 1axiB b.1.2.1,b.1.2.1 22005,22006 1gcf 109 5.17e+01 1cto b.1.2.1 22053 1mxgA 435 5.19e+01 b.71.1.1,c.1.8.1 85193,85194 1dxkA 227 5.36e+01 1a7tA d.157.1.1 42036 1j7xA 302 5.43e+01 c.14.1.2 66425 1r29A 127 5.50e+01 d.42.1.1 96856 1h7zA 194 5.53e+01 1qhvA b.21.1.1 60733 1oalA 151 5.66e+01 b.1.8.1 86739 2aehA 369 5.68e+01 1l5xA 280 5.72e+01 c.106.1.1 77718 2bc2B 227 5.92e+01 1a7tA d.157.1.1 42032 2bc2A 227 5.94e+01 1a7tA d.157.1.1 42031 1aipA 405 5.94e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1zr6A 503 5.94e+01 1y0nA 78 6.01e+01 2b99A 156 6.01e+01 1c01A 76 6.07e+01 1c01A b.11.1.5 23633 1dkuA 317 6.14e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1f5wA 126 6.15e+01 1f5wA b.1.1.1 19705 1va4A 279 6.20e+01 c.69.1.12 108458 2ar1A 172 6.20e+01 2atvA 196 6.32e+01 1mqoA 227 6.37e+01 d.157.1.1 103846 2ajfE 180 6.61e+01 1cto 109 6.67e+01 1cto b.1.2.1 22054 2bjrA 368 6.85e+01 2bynA 227 6.92e+01 1bmc 221 7.01e+01 1a7tA d.157.1.1 42038 1y81A 138 7.03e+01 2pcy 99 7.24e+01 1plc b.6.1.1 22849 1w30A 201 7.56e+01 1cr0A 296 7.58e+01 1cr1A c.37.1.11 32287 1cr1A 296 7.73e+01 1cr1A c.37.1.11 32286 1atu 374 7.76e+01 1ovaA e.1.1.1 42636 1in0A 163 7.86e+01 d.58.49.1,d.58.49.1 83694,83695 1aayA 90 7.96e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 2dd8S 202 7.97e+01 1vi7A 217 8.12e+01 d.14.1.11,d.58.11.2 100740,100741 1ri7A 171 8.14e+01 a.4.5.32,d.58.4.2 97504,97505 2bjdA 101 8.29e+01 1xe7A 203 8.46e+01 1pz4A 116 8.53e+01 d.106.1.1 95400 1kte 105 8.83e+01 1kte c.47.1.1 32771 1pvc1 301 8.90e+01 1pov1 1h5wA 309 8.92e+01 e.27.1.1 65635 1eajA 126 9.00e+01 1f5wA b.1.1.1 59401