# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1x8hA 228 3.25e-01 1d2eA 397 5.12e-01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1jjtA 228 6.34e-01 1a7tA d.157.1.1 63139 1dd6A 228 7.66e-01 1a7tA d.157.1.1 42054 1v6fA 151 7.93e-01 d.109.1.2 108395 1jjeA 222 8.69e-01 1a7tA d.157.1.1 63117 1m2xA 223 9.28e-01 d.157.1.1 84764 2fhxA 246 9.90e-01 1wh0A 134 1.49e+00 1ao5A 237 1.88e+00 5ptp b.47.1.2 26334 1aw7A 194 1.91e+00 1aw7A b.40.2.2,d.15.6.1 25164,37753 3tss 194 2.06e+00 1aw7A b.40.2.2,d.15.6.1 25160,37749 1xhbA 472 2.29e+00 1ts3A 194 2.65e+00 1aw7A b.40.2.2,d.15.6.1 25168,37757 1x8gA 227 2.98e+00 1ab2 109 4.25e+00 1lckA d.93.1.1 40506 1qtyT 101 5.14e+00 1fltX b.1.1.4 21769 2gn5 87 5.46e+00 1gvp b.40.4.7 25386 1fltY 95 5.93e+00 1fltX b.1.1.4 21766 1fltX 95 6.15e+00 1fltX b.1.1.4 21765 1914 232 6.16e+00 1914 d.49.1.1,d.49.1.1 83028,83029 1azzA 226 6.74e+00 5ptp b.47.1.2 26072 1z8gA 372 7.64e+00 2aw2A 120 9.94e+00 1zmaA 118 1.03e+01 1qsvA 101 1.09e+01 1fltX b.1.1.4 21771 1p57B 255 1.17e+01 b.47.1.2 94126 1zuoA 186 1.25e+01 1wdyA 285 1.29e+01 1kliH 254 1.29e+01 b.47.1.2 77435 1a6uL 108 1.29e+01 1mfa b.1.1.1 20254 1u3oA 82 1.30e+01 2bz6H 254 1.31e+01 2bc2B 227 1.41e+01 1a7tA d.157.1.1 42032 1mxgA 435 1.44e+01 b.71.1.1,c.1.8.1 85193,85194 1m3uA 264 1.47e+01 c.1.12.8 84784 1jbuH 254 1.58e+01 5ptp b.47.1.2 62856 1ayaA 101 1.71e+01 1qadA d.93.1.1 40460 1bmc 221 1.75e+01 1a7tA d.157.1.1 42038 2gvaA 87 1.82e+01 1gvp b.40.4.7 25389 1dlfL 113 1.88e+01 8fabA b.1.1.1 20382 1kgcD 206 1.95e+01 b.1.1.1,b.1.1.2 77384,77385 1efcA 393 1.96e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1a6vL 110 2.02e+01 1mfa b.1.1.1 20256 1danH 254 2.04e+01 5ptp b.47.1.2 26292 1ukgA 252 2.08e+01 b.29.1.1 99489 1n3oA 252 2.11e+01 b.29.1.1 79967 1eft 405 2.18e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1ntr 124 2.23e+01 1dbwA c.23.1.1 31092 2bc2A 227 2.25e+01 1a7tA d.157.1.1 42031 1v3eA 431 2.28e+01 b.68.1.1 100287 1b85A 351 2.28e+01 1arv a.93.1.1 18581 1oaqL 120 2.34e+01 b.1.1.1 92708 1b80A 351 2.36e+01 1arv a.93.1.1 18579 1rerA 391 2.38e+01 b.1.18.4,f.10.1.1 97327,97328 1a6wL 109 2.42e+01 1mfa b.1.1.1 20252 1zxuA 217 2.48e+01 1mwrA 646 2.52e+01 d.17.4.5,d.175.1.1,e.3.1.1 79586,79587,79588 1aotF 106 2.54e+01 1lckA d.93.1.1 40458 1qpaA 345 2.66e+01 1arv a.93.1.1 18585 2c60A 111 2.70e+01 1pqsA 77 2.72e+01 d.15.2.2 88277 1llp 343 2.76e+01 1arv a.93.1.1 18578 1pz4A 116 2.78e+01 d.106.1.1 95400 2c78A 405 2.78e+01 2fuqA 747 2.80e+01 1mfa 247 2.95e+01 1mfa b.1.1.1,b.1.1.1 19888,19889 1rms 105 2.96e+01 9rnt d.1.1.4 36235 1mh0A 287 2.98e+01 b.47.1.2 79110 1rds 105 3.01e+01 9rnt d.1.1.4 36236 1yhpA 212 3.11e+01 1y7rA 133 3.12e+01 1w30A 201 3.18e+01 2pleA 105 3.18e+01 1qadA d.93.1.1 40522 1j7xA 302 3.30e+01 c.14.1.2 66425 1mak 113 3.41e+01 8fabA b.1.1.1 19825 1exmA 405 3.54e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1yy5B 513 3.56e+01 1gvp 87 3.57e+01 1gvp b.40.4.7 25369 1kk1A 410 3.65e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1ao7B 100 3.76e+01 1agdB b.1.1.2 20697 1q2yA 140 3.81e+01 d.108.1.1 95655 1tit 98 3.83e+01 1tit b.1.1.4 21716 1qcsA 211 3.96e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1r4yA 136 4.00e+01 d.1.1.3 97056 2al6A 375 4.01e+01 1hyxL 216 4.02e+01 8fabA b.1.1.1,b.1.1.2 20166,21190 1weyA 104 4.05e+01 1vzqH 250 4.26e+01 1hxmD 242 4.31e+01 b.1.1.1,b.1.1.2 61373,61374 1j05A 111 4.35e+01 b.1.1.1 90735 1tiu 98 4.47e+01 1tit b.1.1.4 21715 2a6tA 271 4.63e+01 1qz8A 113 4.70e+01 b.140.1.1 96619 1b77A 228 5.00e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1lo6A 223 5.01e+01 b.47.1.2 74143 1vkkA 154 5.11e+01 d.109.1.2 108669 1pqnA 127 5.20e+01 c.47.1.8 95025 1mqoA 227 5.22e+01 d.157.1.1 103846 1f3rB 257 5.24e+01 1f3rB b.1.1.1,b.1.1.1 20416,20417 1lu4A 136 5.28e+01 c.47.1.10 91124 1rsgA 516 5.30e+01 1ygtA 111 5.32e+01 1vbuA 328 5.36e+01 1flrH 219 5.38e+01 1igtB b.1.1.1,b.1.1.2 19905,20999 1r7lA 110 5.41e+01 d.277.1.1 104837 2bjdA 101 5.46e+01 1r9fA 136 5.63e+01 d.255.1.1 97257 1jmtA 104 5.63e+01 d.58.7.3 63180 2bjrA 368 5.89e+01 2aiqA 231 6.09e+01 1jcfA 344 6.29e+01 c.55.1.1,c.55.1.1 62878,62879 1fjgL 135 6.43e+01 1fjfL b.40.4.5 25346 1oo4A 111 6.43e+01 d.93.1.1 87185 1a4kA 217 6.49e+01 8fabA b.1.1.1,b.1.1.2 20236,21248 1yaiA 151 6.52e+01 1yaiA b.1.8.1 22289 1pkp 150 6.59e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1tltA 319 6.62e+01 c.2.1.3,d.81.1.5 107135,107136 1kte 105 6.65e+01 1kte c.47.1.1 32771 1oalA 151 6.65e+01 b.1.8.1 86739 1ae3 86 6.80e+01 1gvp b.40.4.7 25381 1vqb 87 6.81e+01 1gvp b.40.4.7 25370 1a4jA 217 6.84e+01 8fabA b.1.1.1,b.1.1.2 20232,21244 1j0dA 341 6.91e+01 c.79.1.1 83902 2aehA 369 7.13e+01 1f2dA 341 7.16e+01 1f2dA c.79.1.1 35298 1a22B 238 7.28e+01 1axiB b.1.2.1,b.1.2.1 22003,22004 1dxkA 227 7.34e+01 1a7tA d.157.1.1 42036 1ks9A 291 7.37e+01 a.100.1.7,c.2.1.6 68857,68858 1owxA 121 7.52e+01 d.58.7.1 87494 1h8dH 260 7.75e+01 5ptp 1j3mA 129 7.81e+01 d.129.7.1 103836 1m98A 317 7.84e+01 a.175.1.1,d.17.4.6 78866,78867 1vazA 88 7.94e+01 d.245.1.1 100554 1v5rA 97 7.98e+01 1ihmA 530 7.98e+01 1ihmA b.121.4.3 62385 1x3qA 57 7.98e+01 1n99A 166 8.04e+01 b.36.1.1,b.36.1.1 85459,85460 1ahtH 259 8.16e+01 5ptp 1uypA 432 8.19e+01 b.29.1.19,b.67.2.3 100176,100177 1ae2 87 8.25e+01 1gvp b.40.4.7 25382 1axiB 236 8.45e+01 1axiB b.1.2.1,b.1.2.1 21997,21998 1akjD 120 8.80e+01 1cd8 b.1.1.1 19712 2ait 74 8.82e+01 1hoe b.5.1.1 22837 2pldA 105 8.86e+01 1qadA d.93.1.1 40521 1cid 177 8.92e+01 1cid b.1.1.1,b.1.1.3 19740,21679 1q7rA 219 8.95e+01 c.23.16.1 96054