# List of top-scoring protein chains for T0316.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v6fA 151 1.15e-01 d.109.1.2 108395 1ok0A 74 5.94e-01 b.5.1.1 93191 1yhfA 115 1.27e+00 1wu2A 396 1.81e+00 1zv1A 65 2.69e+00 1dl7L 109 2.74e+00 1mfa b.1.1.1 20498 1zn8A 180 3.33e+00 2ff4A 388 4.63e+00 1n8pA 393 5.02e+00 c.67.1.3 80304 4xiaA 393 5.05e+00 4xis c.1.15.3 29439 1xlaA 394 5.13e+00 4xis c.1.15.3 29445 1zmaA 118 5.89e+00 1ue9A 80 6.47e+00 b.34.2.1 99255 1vkkA 154 7.03e+00 d.109.1.2 108669 1yuhA 211 7.04e+00 1mfa b.1.1.1,b.1.1.2 20098,21130 1j3mA 129 7.36e+00 d.129.7.1 103836 1wfsA 151 7.76e+00 2ajfE 180 8.09e+00 1oayL 110 8.19e+00 b.1.1.1 92737 1sm3L 215 8.28e+00 8fabA b.1.1.1,b.1.1.2 20368,21360 1pg7W 210 8.42e+00 b.1.1.1,b.1.1.2 94682,94683 1d2eA 397 8.45e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1xb2A 409 8.48e+00 1a6wL 109 8.52e+00 1mfa b.1.1.1 20252 1a6vL 110 8.60e+00 1mfa b.1.1.1 20256 1ocwL 120 8.71e+00 b.1.1.1 92780 1a6uL 108 8.98e+00 1mfa b.1.1.1 20254 1gigL 210 8.99e+00 1mfa b.1.1.1,b.1.1.2 19910,21004 1oaqL 120 9.08e+00 b.1.1.1 92708 1ngqL 215 9.20e+00 1mfa b.1.1.1,b.1.1.2 20092,21124 2dd8S 202 9.31e+00 2bjmL 110 1.08e+01 1oauL 110 1.09e+01 b.1.1.1 92721 1wuoA 228 1.17e+01 1ddkA 220 1.20e+01 1a7tA d.157.1.1 42056 1jjeA 222 1.21e+01 1a7tA d.157.1.1 63117 1wupA 228 1.21e+01 1jjtA 228 1.21e+01 1a7tA d.157.1.1 63139 1f4xL 210 1.36e+01 8fabA b.1.1.1,b.1.1.2 20450,21414 1f4yL 210 1.36e+01 8fabA b.1.1.1,b.1.1.2 20454,21418 1p4bL 135 1.41e+01 b.1.1.1 94099 1undA 37 1.42e+01 a.14.1.1 107966 1p9bA 442 1.44e+01 c.37.1.10 94385 1nj9A 212 1.45e+01 b.1.1.1,b.1.1.2 91897,91898 1ao5A 237 1.55e+01 5ptp b.47.1.2 26334 1nc2A 215 1.79e+01 b.1.1.1,b.1.1.2 91781,91782 1g6hA 257 1.92e+01 1gajA c.37.1.12 60318 2atvA 196 1.98e+01 1tu7A 208 1.99e+01 1qs0A 407 2.05e+01 1qs0A c.36.1.11 31829 2bp7A 410 2.08e+01 1g9xA 257 2.11e+01 c.37.1.12 76219 1o4sA 389 2.15e+01 c.67.1.1 86620 1wh0A 134 2.25e+01 1xlmA 394 2.27e+01 4xis c.1.15.3 29441 1x62A 79 2.29e+01 1ohoA 131 2.46e+01 1e57A 188 2.47e+01 1auyA b.121.4.6 59259 2fuqA 747 2.50e+01 2futA 748 2.50e+01 1x8iA 227 2.54e+01 1x8hA 228 2.55e+01 2b32A 131 2.60e+01 1cqsA 131 2.74e+01 d.17.4.3 83165 1w6yA 131 2.75e+01 1ea2A 131 2.83e+01 d.17.4.3 64860 1va4A 279 2.89e+01 c.69.1.12 108458 1vqf 87 2.94e+01 1gvp b.40.4.7 25372 1oh0A 131 2.99e+01 d.17.4.3 87004 1vdzA 588 3.04e+01 1w02A 131 3.28e+01 d.17.4.3 108981 1etzA 215 3.33e+01 8fabA b.1.1.1,b.1.1.2 20480,21444 1jmtA 104 3.35e+01 d.58.7.3 63180 1dmqA 131 3.37e+01 1opy d.17.4.3 38116 1plc 99 3.37e+01 1plc b.6.1.1 22846 1w00A 131 3.46e+01 1lilA 212 3.74e+01 8fabA b.1.1.1,b.1.1.2 20557,21466 1c7hA 131 3.86e+01 1opy d.17.4.3 38117 1auyA 189 3.89e+01 1auyA b.121.4.6 23311 1vzzA 131 3.93e+01 d.17.4.3 108977 1vqj 87 3.96e+01 1gvp b.40.4.7 25374 2bf1A 316 3.97e+01 2ahoA 414 4.16e+01 1kcaA 109 4.16e+01 b.87.1.1 68426 1xi8A 403 4.18e+01 1yaiA 151 4.28e+01 1yaiA b.1.8.1 22289 1id0A 152 4.33e+01 d.122.1.3 66111 1gajA 257 4.34e+01 1gajA c.37.1.12 60416 2ccaA 740 4.38e+01 2ccdA 740 4.38e+01 1sj2A 743 4.40e+01 a.93.1.3,a.93.1.3 105597,105598 1m2xA 223 4.50e+01 d.157.1.1 84764 1f39A 101 4.55e+01 1umuA b.87.1.1 28386 1yb3A 175 4.58e+01 1xi7A 61 4.59e+01 1e8oA 85 4.61e+01 1914 d.49.1.1 38773 1vqi 87 4.67e+01 1gvp b.40.4.7 25373 1hehC 88 4.80e+01 1xbd b.2.2.1 60972 1oalA 151 4.82e+01 b.1.8.1 86739 1pfiA 46 4.87e+01 1pfiA h.1.4.1 45558 1h6qA 168 4.96e+01 1h6qA b.88.1.2 60692 1ttnA 106 5.19e+01 1c01A 76 5.46e+01 1c01A b.11.1.5 23633 1ae2 87 5.47e+01 1gvp b.40.4.7 25382 1yhb 87 5.49e+01 1gvp b.40.4.7 25383 1indL 215 5.54e+01 1mfa b.1.1.1,b.1.1.2 19838,20942 1uzgA 392 5.59e+01 1y7rA 133 5.71e+01 1xylA 386 5.73e+01 4xis c.1.15.3 29413 1gkpA 458 5.75e+01 b.92.1.3,c.1.9.6 70231,70232 1fvqA 72 5.75e+01 1aw0 d.58.17.1 60046 1vqd 87 5.88e+01 1gvp b.40.4.7 25375 1yhaA 87 5.95e+01 1gvp b.40.4.7 25384 1dxiA 388 6.01e+01 4xis c.1.15.3 29407 1oajA 151 6.14e+01 b.1.8.1 86738 1qdnA 204 6.19e+01 1qcsA b.52.2.3,d.31.1.1 26928,38462 1a3p 45 6.20e+01 1egf g.3.11.1 44284 1gkh 87 6.22e+01 1gvp b.40.4.7 25371 1ib5A 151 6.24e+01 1yaiA b.1.8.1 62145 1gvp 87 6.25e+01 1gvp b.40.4.7 25369 1ae3 86 6.29e+01 1gvp b.40.4.7 25381 1n9sA 93 6.34e+01 b.38.1.1 80351 1qqtA 551 6.37e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 2gyiA 386 6.37e+01 4xis c.1.15.3 29409 1bzoA 151 6.48e+01 1yaiA b.1.8.1 22292 1qcsA 211 6.49e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1v91A 38 6.63e+01 1ibbA 151 6.65e+01 1yaiA b.1.8.1 62156 1cqa 133 6.78e+01 3nul d.110.1.1 40890 1nznA 126 6.85e+01 a.118.8.1 92382 1h5yA 253 6.95e+01 c.1.2.1 65638 1n9rA 93 7.06e+01 b.38.1.1 80344 1vi7A 217 7.12e+01 d.14.1.11,d.58.11.2 100740,100741 1vqa 87 7.26e+01 1gvp b.40.4.7 25377 1ddmA 135 7.27e+01 2nmbA b.55.1.2 26993 1aogA 485 7.38e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30517,30518,40190 1bzlA 486 7.39e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30521,30522,40192 1gxfA 492 7.47e+01 c.3.1.5,c.3.1.5,d.87.1.1 90527,90528,90529 2ctfA 102 7.64e+01 1914 232 7.67e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1ojqA 212 7.75e+01 d.166.1.1 93146 1p8tA 285 7.94e+01 c.10.2.7 87982 1t8pA 267 8.07e+01 c.60.1.1 106667 1yioA 208 8.11e+01 1oznA 285 8.23e+01 c.10.2.7 87621 2cq2A 114 8.36e+01 2g8yA 385 8.41e+01 1ndaA 491 8.41e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30525,30526,40194 1clkA 387 8.45e+01 4xis c.1.15.3 29438 2nmbA 160 8.45e+01 2nmbA b.55.1.2 26994 1qt1A 387 8.47e+01 4xis c.1.15.3 29436 1vjqA 79 8.50e+01 k.43.1.1 100830 1m3uA 264 8.50e+01 c.1.12.8 84784 1vlgA 176 8.50e+01 a.25.1.1 108816 1mvwA 840 8.53e+01 i.15.1.1 79523 2mysA 843 8.53e+01 1lvk b.34.3.1,c.37.1.9 24557,32154 1muwA 386 8.62e+01 c.1.15.3 79495 1zr6A 503 8.66e+01