# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zn8A 180 2.23e-01 1z0sA 278 3.09e-01 1suwA 249 3.09e-01 e.52.1.1 106027 1oaqL 120 3.23e-01 b.1.1.1 92708 1ok0A 74 3.63e-01 b.5.1.1 93191 1ifrA 121 5.99e-01 b.1.16.1 71203 1yhfA 115 8.18e-01 1yhpA 212 1.51e+00 1ojqA 212 1.73e+00 d.166.1.1 93146 2c78A 405 1.97e+00 2fs2A 151 2.07e+00 1uebA 184 2.23e+00 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1o4tA 133 2.77e+00 b.82.1.9 86622 2d7nA 93 3.09e+00 1m2xA 223 3.66e+00 d.157.1.1 84764 1vkyA 347 4.20e+00 e.53.1.1 108696 1nqeA 594 4.30e+00 f.4.3.3 86027 1fs0E 138 4.56e+00 1aqt a.2.10.1,b.93.1.1 59997,59998 2brcA 214 5.26e+00 2d1eA 248 6.85e+00 1z47A 355 6.98e+00 1h54A 754 7.75e+00 a.102.1.4,b.30.5.3 60634,60635 1qcsA 211 7.93e+00 1qcsA b.52.2.3,d.31.1.1 26927,38461 1uwcA 261 8.00e+00 c.69.1.17 100101 1pz4A 116 8.12e+00 d.106.1.1 95400 1oalA 151 9.50e+00 b.1.8.1 86739 1ukgA 252 9.81e+00 b.29.1.1 99489 2cw8A 537 1.03e+01 1z6bA 154 1.03e+01 1e8pA 46 1.06e+01 g.55.1.1 59385 1y7rA 133 1.08e+01 1q87A 221 1.10e+01 e.47.1.1 96192 1yb3A 175 1.12e+01 1tbuA 118 1.19e+01 1zkiA 133 1.20e+01 1m8aA 70 1.25e+01 d.9.1.1 74579 1bqk 124 1.30e+01 1bqk b.6.1.1 22889 1plc 99 1.30e+01 1plc b.6.1.1 22846 1osyA 115 1.36e+01 b.1.21.1 93502 1mspA 126 1.42e+01 1mspA b.1.11.2 22333 2g50A 530 1.44e+01 1qqp3 220 1.48e+01 1qqp3 1bx1A 314 1.50e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1olmA 403 1.52e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2d4qA 257 1.52e+01 1b9mA 265 1.58e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1o9yA 84 1.60e+01 b.139.1.1 92692 1xsqA 168 1.61e+01 1fnd 314 1.61e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1dq3A 454 1.79e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1dyoA 160 1.92e+01 1dyoA b.18.1.7 23771 1kk1A 410 1.93e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2gaeA 346 1.96e+01 1rsgA 516 2.06e+01 1rwrA 301 2.10e+01 b.80.1.11 97990 1o97C 264 2.20e+01 c.26.2.3 81232 2bjfA 329 2.22e+01 1cjaA 342 2.23e+01 1cjaA d.144.1.3 41708 1kapP 479 2.31e+01 1sat b.80.7.1,d.92.1.6 28012,40298 1wwcA 118 2.41e+01 1wwcA b.1.1.4 21778 1c01A 76 2.44e+01 1c01A b.11.1.5 23633 1vckA 115 2.47e+01 1hnjA 317 2.49e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1k7iA 479 2.55e+01 b.80.7.1,d.92.1.6 77281,77282 1hl9A 449 2.67e+01 b.71.1.3,c.1.8.11 90650,90651 1umwA 237 2.78e+01 d.223.1.2,d.223.1.2 99631,99632 1dv1A 449 2.81e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1wh0A 134 2.98e+01 2f57A 317 3.02e+01 1zkkA 167 3.07e+01 1quqB 121 3.14e+01 1quqB b.40.4.3 25305 1z8gA 372 3.23e+01 1ji6A 589 3.23e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1wruA 379 3.23e+01 1sjdA 368 3.25e+01 c.1.11.2,d.54.1.1 105632,105633 1pmy 123 3.29e+01 1bqk b.6.1.1 22888 2bz6H 254 3.35e+01 1kb0A 677 3.49e+01 a.3.1.6,b.70.1.1 68378,68379 1cqxA 403 3.63e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1neu 124 3.69e+01 1neu b.1.1.1 19704 2ae0X 345 3.72e+01 1xauA 122 3.80e+01 1pm1X 180 3.82e+01 b.60.1.1 104189 1zhxA 438 3.85e+01 2gimA 106 3.87e+01 1h8eD 482 3.94e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 2evbA 74 4.08e+01 1xfcA 384 4.15e+01 1s5jA 847 4.19e+01 1g38A 393 4.38e+01 2admA c.66.1.27 60235 1qz8A 113 4.41e+01 b.140.1.1 96619 1wbiA 129 4.45e+01 1t77A 414 4.50e+01 2dd8S 202 4.54e+01 1gv9A 260 4.54e+01 b.29.1.13 70596 2g0qA 173 4.57e+01 1uaiA 224 4.59e+01 b.29.1.18 107761 1v5rA 97 4.70e+01 1v70A 105 4.74e+01 1y9qA 192 4.75e+01 2ck3D 482 4.85e+01 1sgpE 185 4.88e+01 1qq4A b.47.1.1 25816 1gr3A 160 4.88e+01 b.22.1.1 65476 1eajA 126 4.91e+01 1f5wA b.1.1.1 59401 1914 232 5.10e+01 1914 d.49.1.1,d.49.1.1 83028,83029 2fl4A 149 5.12e+01 1onwA 390 5.13e+01 b.92.1.7,c.1.9.13 87172,87173 1tu7A 208 5.15e+01 1pzgA 331 5.21e+01 c.2.1.5,d.162.1.1 95425,95426 1mqoA 227 5.23e+01 d.157.1.1 103846 1fsgA 233 5.33e+01 1qk3A c.61.1.1 34029 1xypA 190 5.54e+01 1axkA b.29.1.11 24327 1ygtA 111 5.59e+01 2gpzA 111 5.60e+01 2c30A 321 5.61e+01 1earA 147 5.62e+01 b.107.1.1,d.58.38.1 64875,64876 1yz1A 174 5.67e+01 2fhxA 246 5.76e+01 1b5eA 246 5.87e+01 1b5eA d.117.1.1 41056 2g1lA 104 5.88e+01 1kbvA 327 5.95e+01 b.6.1.3,b.6.1.3 68395,68396 2b95A 106 6.11e+01 1odmA 331 6.12e+01 b.82.2.1 86875 1i88A 389 6.15e+01 c.95.1.2,c.95.1.2 66070,66071 1ub1A 133 6.18e+01 d.10.1.3 99140 1ux6A 350 6.21e+01 b.29.1.16,g.75.1.1 100145,100146 1khbA 625 6.22e+01 c.91.1.1,c.109.1.1 68606,68607 1qx4A 274 6.28e+01 b.43.4.2,c.25.1.1 104624,104625 1mjfA 281 6.35e+01 c.66.1.17 79198 1fvuB 125 6.38e+01 1ixxB d.169.1.1 42346 1xe1A 116 6.41e+01 b.43.3.1 109571 1b7yA 350 6.49e+01 1pysA d.104.1.1 40776 1j7xA 302 6.53e+01 c.14.1.2 66425 1s98A 107 6.58e+01 b.124.1.1 105377 1vb0A 61 6.58e+01 1nqzA 194 6.64e+01 d.113.1.1 86077 2f4lA 297 6.65e+01 1jjtA 228 6.67e+01 1a7tA d.157.1.1 63139 1z9lA 128 6.69e+01 1zm0A 114 6.76e+01 1hpcA 131 6.80e+01 1htp b.84.1.1 28221 2a6vA 226 6.87e+01 1fjgL 135 6.95e+01 1fjfL b.40.4.5 25346 1cs0A 1073 7.00e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1wj9A 211 7.05e+01 1y55X 126 7.13e+01 2sfa 191 7.21e+01 1qq4A b.47.1.1 25815 1fr3A 67 7.29e+01 1fr3A b.40.6.1 25436 1zvnA 99 7.40e+01 1gttA 429 7.41e+01 d.177.1.1,d.177.1.1 70529,70530 1gk9B 557 7.52e+01 1lkdA 297 7.94e+01 d.32.1.3,d.32.1.3 78059,78060 1igqA 62 7.97e+01 b.34.1.3 66130 1pkoA 139 7.97e+01 b.1.1.1 88147 1v10A 521 8.13e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 2crvA 120 8.25e+01 1bywA 110 8.27e+01 1bywA d.110.3.6 40912 1kte 105 8.35e+01 1kte c.47.1.1 32771 1q0qA 406 8.44e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1lc0A 294 8.58e+01 c.2.1.3,d.81.1.4 73823,73824 1xnaA 183 8.65e+01 1xnaA b.18.1.8 23773 1qy6A 274 8.79e+01 b.47.1.1 96574 1zdzA 302 8.81e+01 1jz8A 1023 8.88e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834