# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yhfA 115 1.53e-01 1uebA 184 1.76e-01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1ok0A 74 1.90e-01 b.5.1.1 93191 2c78A 405 2.97e-01 1z6bA 154 4.65e-01 2fhxA 246 5.23e-01 2fs2A 151 6.74e-01 1m2xA 223 8.36e-01 d.157.1.1 84764 1yhpA 212 9.91e-01 1x8hA 228 1.17e+00 1ifrA 121 1.27e+00 b.1.16.1 71203 1oaqL 120 1.42e+00 b.1.1.1 92708 1dq3A 454 1.47e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2gpzA 111 1.47e+00 1oalA 151 2.02e+00 b.1.8.1 86739 2d4qA 257 2.52e+00 2brcA 214 2.73e+00 2cw8A 537 2.88e+00 1kk1A 410 3.50e+00 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1neu 124 3.91e+00 1neu b.1.1.1 19704 2d7nA 93 4.19e+00 1z9lA 128 4.29e+00 1wh0A 134 4.74e+00 2bwrA 401 4.79e+00 1yb3A 175 5.16e+00 1zkiA 133 5.57e+00 1quqB 121 5.62e+00 1quqB b.40.4.3 25305 1khbA 625 6.03e+00 c.91.1.1,c.109.1.1 68606,68607 1pkoA 139 6.47e+00 b.1.1.1 88147 1zn8A 180 7.45e+00 2g1lA 104 8.19e+00 1dyoA 160 8.28e+00 1dyoA b.18.1.7 23771 1nqeA 594 8.54e+00 f.4.3.3 86027 1vk3A 615 8.55e+00 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1suwA 249 8.86e+00 e.52.1.1 106027 2fimA 276 9.19e+00 1fs0E 138 9.55e+00 1aqt a.2.10.1,b.93.1.1 59997,59998 1e8pA 46 9.58e+00 g.55.1.1 59385 2alaA 391 9.94e+00 1mspA 126 9.98e+00 1mspA b.1.11.2 22333 1zkkA 167 1.05e+01 1vzyA 291 1.05e+01 2bjqA 345 1.07e+01 1h8eD 482 1.08e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1ukgA 252 1.08e+01 b.29.1.1 99489 1yukB 120 1.08e+01 1jjtA 228 1.11e+01 1a7tA d.157.1.1 63139 1tu7A 208 1.12e+01 1g1kA 143 1.13e+01 1aohA b.2.2.2 22404 1c01A 76 1.16e+01 1c01A b.11.1.5 23633 1uaiA 224 1.17e+01 b.29.1.18 107761 1z0sA 278 1.18e+01 1cqxA 403 1.18e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1xe1A 116 1.22e+01 b.43.3.1 109571 2bz6H 254 1.22e+01 2f4lA 297 1.25e+01 2ck3D 482 1.26e+01 1x8gA 227 1.26e+01 1zkpA 268 1.28e+01 1umhA 184 1.30e+01 b.18.1.21 99605 1ts9A 102 1.36e+01 1xauA 122 1.39e+01 1ca1 370 1.43e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1ut7A 171 1.44e+01 b.143.1.1 99906 1ofdA 1520 1.48e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1cv8 174 1.50e+01 1cv8 d.3.1.1 37089 1vkkA 154 1.60e+01 d.109.1.2 108669 1aohA 147 1.70e+01 1aohA b.2.2.2 22401 1qznA 173 1.71e+01 b.2.2.2 104669 1fvuB 125 1.72e+01 1ixxB d.169.1.1 42346 1wruA 379 1.73e+01 1iq6A 134 1.78e+01 d.38.1.4 76755 1lo6A 223 1.80e+01 b.47.1.2 74143 1q87A 221 1.91e+01 e.47.1.1 96192 1ji6A 589 1.92e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2bgoA 140 2.06e+01 1cid 177 2.12e+01 1cid b.1.1.1,b.1.1.3 19740,21679 1owxA 121 2.17e+01 d.58.7.1 87494 1z4vA 532 2.17e+01 1earA 147 2.21e+01 b.107.1.1,d.58.38.1 64875,64876 1ok8A 394 2.21e+01 b.1.18.4,f.10.1.1 93236,93237 1fr3A 67 2.21e+01 1fr3A b.40.6.1 25436 1o4tA 133 2.24e+01 b.82.1.9 86622 1z8gA 372 2.24e+01 2fcbA 173 2.33e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 2b3nA 159 2.41e+01 2d1eA 248 2.42e+01 1q7sA 117 2.56e+01 c.131.1.1 96055 1j7xA 302 2.58e+01 c.14.1.2 66425 1jmtA 104 2.59e+01 d.58.7.3 63180 1vfvA 366 2.61e+01 c.37.1.9 108592 1jeyA 609 2.61e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1m8aA 70 2.64e+01 d.9.1.1 74579 1ogsA 497 2.73e+01 b.71.1.2,c.1.8.3 86997,86998 1bx1A 314 2.83e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1tbuA 118 2.86e+01 1uvqA 197 2.90e+01 b.1.1.2,d.19.1.1 100062,100063 2crvA 120 2.99e+01 1odmA 331 3.03e+01 b.82.2.1 86875 1rypL 212 3.04e+01 d.153.1.4 41880 1uylA 236 3.04e+01 d.122.1.1 108147 1ylnA 252 3.05e+01 1x0tA 120 3.07e+01 1qfgA 725 3.09e+01 1by5A f.4.3.3 43803 1xypA 190 3.10e+01 1axkA b.29.1.11 24327 1mkaA 171 3.14e+01 1mkaA d.38.1.2 38543 1n0lA 224 3.14e+01 b.1.11.1,b.7.2.1 79744,79745 1mla 309 3.25e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1fnd 314 3.26e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1g38A 393 3.34e+01 2admA c.66.1.27 60235 1k7iA 479 3.42e+01 b.80.7.1,d.92.1.6 77281,77282 1x4rA 99 3.43e+01 1kb0A 677 3.44e+01 a.3.1.6,b.70.1.1 68378,68379 1tlyA 278 3.56e+01 f.4.6.1 107143 1zhxA 438 3.56e+01 2bw2A 140 3.64e+01 2carA 196 3.64e+01 1h54A 754 3.66e+01 a.102.1.4,b.30.5.3 60634,60635 2bm3A 166 3.67e+01 1ym5A 300 3.69e+01 1sacA 204 3.69e+01 1sacA b.29.1.5 24237 1hl9A 449 3.70e+01 b.71.1.3,c.1.8.11 90650,90651 1yrtA 364 3.71e+01 1gt1A 159 3.72e+01 b.60.1.1 90515 1t77A 414 3.76e+01 1s12A 94 3.87e+01 1vb0A 61 3.88e+01 2cvhA 220 3.94e+01 1t6cA 315 3.95e+01 c.55.1.8,c.55.1.8 106558,106559 2fblA 153 3.99e+01 1g3kA 174 4.03e+01 1nedA d.153.1.4 41989 1wzaA 488 4.10e+01 1pk6B 132 4.10e+01 b.22.1.1 94802 1khoA 370 4.14e+01 a.124.1.1,b.12.1.3 72489,72490 1dkuA 317 4.15e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1gv9A 260 4.19e+01 b.29.1.13 70596 1qmhA 347 4.27e+01 1qmhA c.47.2.1,d.68.2.1 33082,39568 2c5qA 240 4.36e+01 1quqA 129 4.49e+01 1quqA b.40.4.3 25303 2f9cA 334 4.51e+01 1x89A 178 4.52e+01 1tvxA 75 4.56e+01 1tvxA d.9.1.1 37441 1kcqA 104 4.56e+01 d.109.1.1 68449 1yz1A 174 4.61e+01 1xfcA 384 4.64e+01 1gvp 87 4.65e+01 1gvp b.40.4.7 25369 1kte 105 4.65e+01 1kte c.47.1.1 32771 2sfa 191 4.73e+01 1qq4A b.47.1.1 25815 1o97C 264 4.74e+01 c.26.2.3 81232 2c9wA 169 4.79e+01 1y55X 126 4.80e+01 1pzgA 331 4.86e+01 c.2.1.5,d.162.1.1 95425,95426 1o7iA 119 4.90e+01 b.40.4.3 86642 1osyA 115 4.90e+01 b.1.21.1 93502 1t82A 155 4.92e+01 d.38.1.5 106639 1ff4A 65 4.96e+01 g.7.1.1 83251 1o9yA 84 4.97e+01 b.139.1.1 92692 1c0pA 363 4.98e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1wbiA 129 5.01e+01 1v70A 105 5.04e+01 4ubpA 101 5.06e+01 1ubpA d.8.1.1 37352 1eaqA 140 5.11e+01 b.2.5.6 76144 1sb2A 133 5.14e+01 1eajA 126 5.16e+01 1f5wA b.1.1.1 59401 1914 232 5.19e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1n12A 138 5.20e+01 b.2.3.2 79779 1z47A 355 5.23e+01 1s5jA 847 5.25e+01 1hnjA 317 5.28e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 2bjfA 329 5.39e+01 1ixmA 192 5.39e+01 1ixmA d.123.1.1 41114 1mqoA 227 5.40e+01 d.157.1.1 103846 1w0pA 781 5.40e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1i8aA 189 5.42e+01 1i82A b.1.9.2 61951 1jl2A 156 5.44e+01 c.55.3.1 66822 1e9pA 151 5.50e+01 1mfmA b.1.8.1 22215 1nszA 347 5.63e+01 b.30.5.4 80724 1y7rA 133 5.63e+01 1c96A 753 5.74e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1pz4A 116 5.79e+01 d.106.1.1 95400 1gxuA 91 5.79e+01 d.58.10.1 76378 1p9bA 442 5.81e+01 c.37.1.10 94385 1w2tA 432 5.84e+01 1gkpA 458 5.93e+01 b.92.1.3,c.1.9.6 70231,70232 1fjgL 135 5.98e+01 1fjfL b.40.4.5 25346 1c8cA 64 6.00e+01 1azpA b.34.13.1 59084 1zuoA 186 6.02e+01 1s55A 156 6.04e+01 1v1hA 103 6.07e+01 b.83.1.1,h.1.17.1 108243,108244 2cx1A 187 6.08e+01 1g7sA 594 6.09e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1uwcA 261 6.11e+01 c.69.1.17 100101 1v10A 521 6.19e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1wwcA 118 6.21e+01 1wwcA b.1.1.4 21778 1f60A 458 6.27e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1xdnA 277 6.29e+01 2f4nA 273 6.30e+01 1z54A 132 6.34e+01 1gpc 218 6.40e+01 1gpc b.40.4.7 25393 1mbyA 88 6.41e+01 d.223.1.1 78931 1aisA 182 6.46e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1mpp 361 6.48e+01 2rmpA b.50.1.2 26856 1zo0A 126 6.60e+01 1xniA 118 6.60e+01 1txkA 498 6.61e+01 b.1.18.2,b.30.5.9 107425,107426 1h5rA 293 6.68e+01 c.68.1.6 65623 1yvhA 329 6.70e+01 1bkf 107 6.70e+01 1fkj d.26.1.1 38382 1rsgA 516 6.79e+01 1o4yA 288 6.80e+01 b.29.1.2 92473 2a74A 643 6.84e+01 1vj2A 126 6.91e+01 b.82.1.10 100796 1j1tA 233 6.91e+01 b.29.1.18 90771 1xe7A 203 6.93e+01 1bbzA 58 7.00e+01 1bbzA b.34.2.1 24477 1pne 140 7.06e+01 1pne d.110.1.1 40866 1fdr 248 7.07e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1iarB 207 7.10e+01 1iarB b.1.2.1,b.1.2.1 22037,22038 1wj9A 211 7.10e+01 2f4iA 197 7.11e+01 1cq3A 233 7.11e+01 1cq3A b.27.1.1 23923 1p80A 753 7.13e+01 c.23.16.3,e.5.1.1 94337,94338 1ejxA 100 7.15e+01 d.8.1.1 83182 2a6aA 218 7.16e+01 1j3mA 129 7.19e+01 d.129.7.1 103836 1ugjA 141 7.29e+01 b.41.1.3 107826 1r9fA 136 7.31e+01 d.255.1.1 97257 1j05B 121 7.33e+01 b.1.1.1 90736 2eifA 136 7.34e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1eylA 186 7.38e+01 1wba b.42.4.1 25593 1y9qA 192 7.43e+01 1qy5A 269 7.43e+01 d.122.1.1 96573 1pm1X 180 7.54e+01 b.60.1.1 104189 2gcfA 73 7.61e+01 1bqk 124 7.65e+01 1bqk b.6.1.1 22889 1upqA 123 7.67e+01 1nb8A 353 7.74e+01 d.3.1.9 80385 1e8cA 498 7.78e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1k5dB 201 7.84e+01 b.55.1.3 68169 1oaqH 121 7.87e+01 b.1.1.1 92707 1yloA 348 7.89e+01 1q0eA 152 7.90e+01 b.1.8.1 95504 1plc 99 7.95e+01 1plc b.6.1.1 22846 2cwsA 237 8.00e+01 1t2bA 397 8.04e+01 1qs1A 462 8.05e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1t8hA 277 8.10e+01 d.194.1.2 106664 1ixlA 131 8.14e+01 d.38.1.5 90717 1m1zA 513 8.18e+01 c.26.2.1,d.153.1.1 78457,78458 1xyiA 66 8.20e+01 1kxlA 199 8.23e+01 b.40.4.3 73155 1f1gA 154 8.25e+01 b.1.8.1 76153 1mvuB 121 8.28e+01 b.1.1.1 91475 1gvzA 237 8.34e+01 b.47.1.2 76360 1kl9A 182 8.40e+01 b.40.4.5 72681 1h9oA 112 8.47e+01 1qadA d.93.1.1 60837 1ojqA 212 8.58e+01 d.166.1.1 93146 1oa2A 218 8.63e+01 b.29.1.11 86721 1w6nA 134 8.67e+01 1vpmA 169 8.68e+01 1ewkA 490 8.68e+01 1ewkA c.93.1.1 35712 1q1rA 431 8.69e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1kjvB 100 8.70e+01 b.1.1.2 77423 4bcl 366 8.75e+01 4bcl b.75.1.1 27968 1osdA 72 8.81e+01 d.58.17.1 104022 1hfuA 503 8.82e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829